BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490232
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03270.1 | Symbols: CYCD6;1 | Cyclin D6;1 | chr4:1432375-143... 1373 0.0
> AT4G03270.1 | Symbols: CYCD6;1 | Cyclin D6;1 | chr4:1432375-1433691
REVERSE LENGTH=909
Length=909
Score = 1373 bits (743), Expect = 0.0
Identities = 853/905 (94%), Gaps = 12/905 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTTTCATCTTGAACATCCTCTCTCACATTCTTCACTACACAATAACTTCAACGAC 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAGTTTCATCTTGAACATCCTCTCTCACATTCTTCACTCCACAATAACTTCAACGAC 60
Query 61 GACACAGACGATGATGAAACCTTACCACACTCTCTCTTCCTCGTCGAGTTTCAACACATG 120
||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACACAGAC--T-ATGAAACTTTACCACACTCTCTCTTCCTCGTCGAGTTTCAACACATG 117
Query 121 CCTTCTTCTCATTACTTCCATAGTCTCAAGTCCTCTGCTTTTCTTCTCTCTAATCGAAAC 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 118 CCTTCTTCTCATTACTTCCATAGCCTCAAGTCCTCTGCTTTTCTTCTCTCTAATCGAAAC 177
Query 181 CACGCCATTAGTTCAATCATTCAGTATTCAAGAAAATTCGACGACCCATCTCTGACGTAT 240
|| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CAAGCCATTTCTTCAATCACTCAGTATTCAAGAAAATTCGACGACCCATCTCTGACGTAT 237
Query 241 CTTGCTGTGAATTATCTAGACAGATTCTTGTCCAGCGAAGATATGCCGCAATCAAAGCCC 300
||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 238 CTTGCTGTGAATTATCTAGACAGGTTCTTGTCTAGCGAAGATATGCCGCAGTCAAAGCCC 297
Query 301 TGGATTCTCAAGCTTATCTCTCTTTCTTGTGTCTCTTTGTCTGCCAAAATGAGGAAGCCA 360
|||||||| ||||| || ||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 298 TGGATTCTTAAGCTCATATCTCTCTCTTGTGTCTCTTTGTCTGCAAAAATGAGGAAACCA 357
Query 361 GAGATGTCTGTTTCTCATCTTCCGGTGGAAGGTGAGTTTTTTGATGCTCAGATGATAGAG 420
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GACATGTCTGTTTCTGATCTTCCGGTGGAAGGTGAGTTTTTTGATGCTCAGATGATAGAG 417
Query 421 AGAATGGAGAATGTGATTTTAGGAGCTCTTAAATGGCGAATGCGCTCTGTTACACCTTTC 480
|||||||||||||||||| ||||||||||||||||| | |||||||||||||| ||||||
Sbjct 418 AGAATGGAGAATGTGATTCTAGGAGCTCTTAAATGGAGGATGCGCTCTGTTACTCCTTTC 477
Query 481 TCCTTTCTCGCCTTTTTCATTAGTCTCTTTGAGCTCAAAGAAGA---TCCTTTGGTACTA 537
|||||| | ||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 478 TCCTTTTTGGCCTTTTTCATTAGTCTCTTTGAGCTCAAAGAAGAAGATCCTTTACTACTA 537
Query 538 AAACATTCCCTCAAATCTCAAGCCATTGATCTTACCTTCAATCTTCAACATGATATCAGA 597
||||||||||||||||||||| ||| ||||||||| |||| ||||||||||||||||||
Sbjct 538 AAACATTCCCTCAAATCTCAAACCAGTGATCTTACTTTCAGTCTTCAACATGATATCAGT 597
Query 598 TTCCTTGAGTTTAAACCATCGGTGATTGCAGGCGCCGCACTTCTCTTTGCTTCTTTCGAG 657
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 598 TTCCTCGAGTTTAAACCATCGGTGATTGCAGGCGCGGCACTTCTCTTTGCTTCTTTCGAG 657
Query 658 CTCTGTCCTCTACAGTTCCCATGTTTCAGTAACAGAATCTACCAATGCACATTTGTAAAT 717
||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||
Sbjct 658 CTCTGTCCTCTACAGTTTCCATGTTTCAGTAACAGAATCAACCAATGCACATATGTAAAT 717
Query 718 AAGGATGAGTTAATGAAGTGTTACAAAGCAATACAAGAGAGAGATAT-A--GTTGGAGAA 774
||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||
Sbjct 718 AAGGATGAGTTAATGGAGTGTTACAAAGCAATACAAGAGAGAGATATTATAGTTGGAGAA 777
Query 775 AACGAAGCAAGCTCTGAAACAGCAGTAAATGTGCTTGATCAGCAATTCTCGAGCTGTGAA 834
||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 778 AACGAAGGAAGCACTGAAACAGCAGTAAATGTGCTTGATCAGCAATTCTCGAGTTGTGAA 837
Query 835 AGCGATAAGAGCATCACAATCACAGCTTCTTC---ACCTAAGAGGAGGAAAACTAGTACT 891
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 838 AGCGATAAGAGCATCACAATCACAGCTTCTTCTTCACCTAAGAGGAGGAAAACTAGTACT 897
Query 892 CGTCG 896
|||||
Sbjct 898 CGTCG 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44105581066
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5