BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490232 Length=903 Score E Sequences producing significant alignments: (Bits) Value AT4G03270.1 | Symbols: CYCD6;1 | Cyclin D6;1 | chr4:1432375-143... 1373 0.0 > AT4G03270.1 | Symbols: CYCD6;1 | Cyclin D6;1 | chr4:1432375-1433691 REVERSE LENGTH=909 Length=909 Score = 1373 bits (743), Expect = 0.0 Identities = 853/905 (94%), Gaps = 12/905 (1%) Strand=Plus/Plus Query 1 ATGGAGTTTCATCTTGAACATCCTCTCTCACATTCTTCACTACACAATAACTTCAACGAC 60 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ATGGAGTTTCATCTTGAACATCCTCTCTCACATTCTTCACTCCACAATAACTTCAACGAC 60 Query 61 GACACAGACGATGATGAAACCTTACCACACTCTCTCTTCCTCGTCGAGTTTCAACACATG 120 ||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 61 GACACAGAC--T-ATGAAACTTTACCACACTCTCTCTTCCTCGTCGAGTTTCAACACATG 117 Query 121 CCTTCTTCTCATTACTTCCATAGTCTCAAGTCCTCTGCTTTTCTTCTCTCTAATCGAAAC 180 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 118 CCTTCTTCTCATTACTTCCATAGCCTCAAGTCCTCTGCTTTTCTTCTCTCTAATCGAAAC 177 Query 181 CACGCCATTAGTTCAATCATTCAGTATTCAAGAAAATTCGACGACCCATCTCTGACGTAT 240 || |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 178 CAAGCCATTTCTTCAATCACTCAGTATTCAAGAAAATTCGACGACCCATCTCTGACGTAT 237 Query 241 CTTGCTGTGAATTATCTAGACAGATTCTTGTCCAGCGAAGATATGCCGCAATCAAAGCCC 300 ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct 238 CTTGCTGTGAATTATCTAGACAGGTTCTTGTCTAGCGAAGATATGCCGCAGTCAAAGCCC 297 Query 301 TGGATTCTCAAGCTTATCTCTCTTTCTTGTGTCTCTTTGTCTGCCAAAATGAGGAAGCCA 360 |||||||| ||||| || ||||| |||||||||||||||||||| ||||||||||| ||| Sbjct 298 TGGATTCTTAAGCTCATATCTCTCTCTTGTGTCTCTTTGTCTGCAAAAATGAGGAAACCA 357 Query 361 GAGATGTCTGTTTCTCATCTTCCGGTGGAAGGTGAGTTTTTTGATGCTCAGATGATAGAG 420 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 GACATGTCTGTTTCTGATCTTCCGGTGGAAGGTGAGTTTTTTGATGCTCAGATGATAGAG 417 Query 421 AGAATGGAGAATGTGATTTTAGGAGCTCTTAAATGGCGAATGCGCTCTGTTACACCTTTC 480 |||||||||||||||||| ||||||||||||||||| | |||||||||||||| |||||| Sbjct 418 AGAATGGAGAATGTGATTCTAGGAGCTCTTAAATGGAGGATGCGCTCTGTTACTCCTTTC 477 Query 481 TCCTTTCTCGCCTTTTTCATTAGTCTCTTTGAGCTCAAAGAAGA---TCCTTTGGTACTA 537 |||||| | ||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 478 TCCTTTTTGGCCTTTTTCATTAGTCTCTTTGAGCTCAAAGAAGAAGATCCTTTACTACTA 537 Query 538 AAACATTCCCTCAAATCTCAAGCCATTGATCTTACCTTCAATCTTCAACATGATATCAGA 597 ||||||||||||||||||||| ||| ||||||||| |||| |||||||||||||||||| Sbjct 538 AAACATTCCCTCAAATCTCAAACCAGTGATCTTACTTTCAGTCTTCAACATGATATCAGT 597 Query 598 TTCCTTGAGTTTAAACCATCGGTGATTGCAGGCGCCGCACTTCTCTTTGCTTCTTTCGAG 657 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 598 TTCCTCGAGTTTAAACCATCGGTGATTGCAGGCGCGGCACTTCTCTTTGCTTCTTTCGAG 657 Query 658 CTCTGTCCTCTACAGTTCCCATGTTTCAGTAACAGAATCTACCAATGCACATTTGTAAAT 717 ||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| Sbjct 658 CTCTGTCCTCTACAGTTTCCATGTTTCAGTAACAGAATCAACCAATGCACATATGTAAAT 717 Query 718 AAGGATGAGTTAATGAAGTGTTACAAAGCAATACAAGAGAGAGATAT-A--GTTGGAGAA 774 ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| Sbjct 718 AAGGATGAGTTAATGGAGTGTTACAAAGCAATACAAGAGAGAGATATTATAGTTGGAGAA 777 Query 775 AACGAAGCAAGCTCTGAAACAGCAGTAAATGTGCTTGATCAGCAATTCTCGAGCTGTGAA 834 ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 778 AACGAAGGAAGCACTGAAACAGCAGTAAATGTGCTTGATCAGCAATTCTCGAGTTGTGAA 837 Query 835 AGCGATAAGAGCATCACAATCACAGCTTCTTC---ACCTAAGAGGAGGAAAACTAGTACT 891 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 838 AGCGATAAGAGCATCACAATCACAGCTTCTTCTTCACCTAAGAGGAGGAAAACTAGTACT 897 Query 892 CGTCG 896 ||||| Sbjct 898 CGTCG 902 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44105581066 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5