BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490234
Length=2750
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03260.1 | Symbols: | Outer arm dynein light chain 1 protei... 4063 0.0
> AT4G03260.1 | Symbols: | Outer arm dynein light chain 1 protein
| chr4:1428171-1431663 FORWARD LENGTH=2843
Length=2843
Score = 4063 bits (2200), Expect = 0.0
Identities = 2553/2715 (94%), Gaps = 58/2715 (2%)
Strand=Plus/Plus
Query 73 TTTTCAAATCCCAATCATTTTCCT-CCAGGTGACCAAGTAATTGGGGAATAA-AAAAGGA 130
||||||||| |||||| ||||||| || |||||||||||||||||||| ||| ||| |||
Sbjct 131 TTTTCAAAT-CCAATCCTTTTCCTCCCTGGTGACCAAGTAATTGGGGATTAACAAAGGGA 189
Query 131 C-AGGGCTTTATTAAGCTCGAAACAATTGTTCTTCACTCTGGCCGCTTCTGCAAAGTCGT 189
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CTGGGGCTTTATTAAGCTCGAAACAATTGTTCTTCACTCTGGCCGCTTCTGCAAAGTCGT 249
Query 190 GTGCTTCTCGCACCTCGGCGCAGGTGTGGGGTGGCCTTGAAGTGCTGACTTCACTCTCTC 249
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 250 GTGCTTCTCGCACCTCTGCGCAGGTGTGGGGTGGCCTTGAAGTGGTGACTTCACTCTGTC 309
Query 250 TTCCAAGGATTTCTCTAGCTTCCATCATTTGGAGGCTCCGTCGTGTTTCTGAGGGTCTTA 309
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 310 TTCCAAGGATTTCTCTAGCTTCTATCATTTGGAGGCTCCGTCGTGTTTCTGAGGGTCTTA 369
Query 310 CCCTTGATTACGGCTAACATTTACTACGCCCACTATACCACCACCTCTAAAGCTTTTATA 369
|||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||||
Sbjct 370 CCCTTGATTACGGCTAACATTTACTACGCCCACTATACCACCTC-T-TAA-GCTTTTATA 426
Query 370 ACAACTCTCTATTCGTGCACAAACGTAGCTTGGATCTTAgttgtttctagtttttttgtg 429
| |||| | |||||||||| |||| || ||||||||||| ||||||||||||| |||||
Sbjct 427 AGAACTTTTTATTCGTGCAAAAACTTAACTTGGATCTTAATTGTTTCTAGTTTAGTTGTG 486
Query 430 gtt-t---g----g-----ttttgct-tg-tttagtttc-ctttt---g-----gt-g-- 462
||| | | | |||| | || ||| |||| ||||| | || |
Sbjct 487 GTTGTAAAGTAAAGAACCGTTTTTTTGTGGTTTGGTTTTGCTTTTTTAGTTTCCGTTGGT 546
Query 463 -atgtagttccctgtttttaagtttgACACAATGGTCAGGTTTTCATGCTTCAACGCTCA 521
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GATGTAGTTCGATGTTATTAAGTTTGACACAATGGTCAGGTTTTCATGCTTCAACGCTCA 606
Query 522 CATCCACCGCCATAAACCTAAGAAATCTGTTGAAGGACTTTCAGAACGAGTGATCAAAGA 581
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 607 CATCCACCGCCATAGACCTAAGAAATCTGTTGAAGGATTTTCAGAACGAGTGATCAAAGA 666
Query 582 AGATGGGTCTAAATCAAAAGGATTGAGCTCAATTATATTTGGGAGAAACATTGCTTCTGT 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGATGGGTCTAAATCAAAAGGATTGAGCTCAATTATATTTGGGAGAAACATTGCTTCTGT 726
Query 642 TAGTGAAAACAGCAGGCCAACTGGCTCTGCCGCTATTGAGCGGGTCTGGAAATCTGAGGA 701
|||||||||||||| |||| | | | || | | | ||||| |||||||||||||||||
Sbjct 727 TAGTGAAAACAGCAAGCCA---G-C-C-GCTG-T-T-GAGCGTGTCTGGAAATCTGAGGA 777
Query 702 AATTAAGCCCAGTGGTATTCTTGAGCATGATATTGACACGCATCAGGTACGGCATCTCAA 761
||||||||||||||| ||||||||||||| ||||| ||||| ||||||| |||||||||
Sbjct 778 AATTAAGCCCAGTGGCATTCTTGAGCATGGTATTGGGACGCACCAGGTACTGCATCTCAA 837
Query 762 GAAAAGTCAGTCTCATGGAAATGAACTATACTTGGATGGGCGGGATGCCACAGAGAATGG 821
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAAAAGTCAATCTCATGGAAATGAACTATACTTGGATGGGCGGGATGCCACAGAGAATGG 897
Query 822 AACAGACGATGGATCAGATCCGATTACTTCTCCAAATTCTCTTGAACAACAGAGTGGTAC 881
||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 898 AACAGACGATGCATCAGATCGGATTACTTCTCCGAATTCTCTTGAACAACAGAGTGGTAT 957
Query 882 TCACGAGGCAGGCAGCAGCAAGCATGTAGATGGAAGTCCTAATCTGTATCAGCAAGCTCC 941
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 958 TCACGAGGCAGGCAGCAGCAAGCGTGTAGATGAAAGTCCTAATCTGTATCAGCAAGGTCC 1017
Query 942 TCGAGCTACAGTTTCTGCTTACCAGGGTTCAAATCAGGCACTCTGTGGGTCTATTTTCTC 1001
||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1018 TCGAGCTTCTGTTTCTGCTTACCAGGGTTCAAATCAAGCACTCTGTGGGTCTATTTTCTC 1077
Query 1002 GGTTGGAGATCTTCATCATACTGATAAAGACAGCCGTCAACTCGATGATACCTCCTTATA 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GGTTGGAGATCTTCATCATACTGATAAAGACAGCCGTCAACTCGATGATACCTCCTTATA 1137
Query 1062 TGGTGAACAGATGGACAACTCAAACAGCCAAACACCTCATGATTCACCTTTGATGGTGAG 1121
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1138 TGGTGAACAGATGGACAACTCAAACAGTCAAACACCTCATGATTCACCTTTGATGGTGAG 1197
Query 1122 GTCGAATTCAATGCCTAATATTGCTGACTCTTCATCAGAGAAGTCTTCACCTTTCAAATA 1181
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GTCGAATTCATTGCCTAATATTGCTGACTCTTCATCAGAGAAGTCTTCACCTTTCAAATA 1257
Query 1182 TTCTTCTCACCACTCTAGATCCTCTGATGACCTTCGTGCTCTCTACA-TGCGCCAAACAG 1240
||||||||||||||||||||||||||||||||||| ||| ||| ||| | ||||||||||
Sbjct 1258 TTCTTCTCACCACTCTAGATCCTCTGATGACCTTCATGCCCTCGACACT-CGCCAAACAG 1316
Query 1241 ATAAATCTGTCCATGAGACTGATGAAGAGGTGAAGCAAGAGCAAGATCAAGATCGGGACT 1300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1317 ATAAATCTGTCCATGAGACTGATGAAGAGGTGAAGCAAGAGGAAGATCAAGATCGGGACT 1376
Query 1301 ATGATACGCATAATTCTGGAGATAACAACCAGGAAAATCTCGTGGAGGATGGATATGATG 1360
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1377 ATGATATGCATAATTCTGGAGATAACAACAAGGAAAATCTCGTGGAGGATGGATATGATG 1436
Query 1361 ATGCATATGATTATTCTTCTTTGGCAAAAGATTGGATCGTACCACCAACAGATGAGTTTA 1420
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1437 ATTCATATGATTATTCTTCTTTGGCAAAAGATTGGATCGTACCACCAACAGATGAGCTTA 1496
Query 1421 AATTAACAAAGTTCCTTGAAGGAGAAACATCAAACCAGCAAGCAGAATTTCCGGGAAAGG 1480
||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1497 AATTATCAAAGTTCCTTGAAGGAGAAACAACAAACCAGCAAGCAGAATTTTCGGGAAAGG 1556
Query 1481 ATTCTAAATTCAAGCGTATCGAGGATTGGGTCAATGACCTTCAGCATGTAAACTTGTCTG 1540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1557 ATTCTAAATTCAAGCGTATCGAAGATTGGGTCAATGACCTTCAGCATGTAAACTTGTCTG 1616
Query 1541 AGGAAGCTGATGAAATAACAGGGTACGACGATGAGTTGCCAAGAGAACCTGTCATGTTGA 1600
|||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 1617 AGGAAGCTGATGAAATAACAGGGTACGATGATGAGTTGCCAAGAGAACCCGTCGTGTTGA 1676
Query 1601 ATGAGCCAGTAACAGCTTCTGCTAAAGTGGATGCCATCAAGTTAACTCCTGGAATGGAAG 1660
|||||| || |||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1677 ATGAGCAAGCAACATCTTCTGCTAAAGTAGATGCCATCAAGTTAACTCCTGGAATGGAAG 1736
Query 1661 CTGCGAAAAAGTATATATCCTCTCTAAGTGCTTCTGCAACCACAGCCCAACTGGTTAGTC 1720
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1737 CTGCGAAAAAGTATATATCCTCTCTAAGTGCTTCTGCAACCACAGCCCAGCTGGTTAGTC 1796
Query 1721 ATGGTCTGGTTGTGATACCATTCCTCAGTGCATTTGTTGGTCTGAGAGTTCTCAATCTCT 1780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 ATGGTCTGGTTGTGATACCATTCCTCAGTGCATTTGTTGGTCTGAGAGTTCTCAATCTCT 1856
Query 1781 CAGGAAATGCTATAGTTAGAATAACCGCTGGTGCTCTTCCTCGAGGACTACATGCATTGA 1840
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1857 CAGGAAATGCTATAGTTAGAATAACCGCTGGTGCTCTTCCTCGAGGTTTACATGCATTGA 1916
Query 1841 ATTTGTCGAAGAACAGCATCTCGGTGATTGAGGGCCTACGTGAACTCACTCGGCTTCGAG 1900
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 ATTTGTCGAAGAACAGTATCTCGGTGATTGAGGGCCTACGTGAACTCACTCGGCTTCGAG 1976
Query 1901 TTTTAGATTTGAGTTACAACCGAATACTTAGACTTGGTCATGGTCTGGCATCTTGCTCCT 1960
| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 1977 TATTAGATTTGAGTTACAACCGAATACTGAGACTTGGTCATGGTCTGGCTTCGTGCTCCT 2036
Query 1961 CTCTGAAAGAACTATACCTAGCTGGGAACAAAATCAGCGAAATCGAGGGTCTTCATCGTC 2020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2037 CTCTGAAAGAACTATACCTAGCTGGGAACAAAATCAGCGAAATCGAGGGTCTTCATCGAC 2096
Query 2021 TCTTGAAATTGACGGTCTTGGATTTACGCTTCAATAAGTTTTCAACCACCAAATGTCTTG 2080
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 TTTTGAAATTGACGGTCCTGGATTTACGCTTCAATAAGTTTTCAACCACCAAATGTCTTG 2156
Query 2081 GCCAGCTCGCTGCAAATTACAGTTCTCTTCAGGCTATAAGCTTGGAAGGTAACCCTGCAC 2140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2157 GCCAGCTCGCTGCAAATTACAGTTCTCTTCAGGCTATAAGCTTGGAAGGTAACCCTGCAC 2216
Query 2141 AGAAGAATGTTGGTGATGAACAACTGAGAAAGTACCTTTTGGGACTTCTTCCAAATTTGG 2200
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2217 AGAAGAATGTTGGTGATGAACAACTGAGAAAGTACCTTTTGGGACTTCTGCCAAATTTGG 2276
Query 2201 TATACTATAATAGACAAGGCACTAAAGATGCTCGGCTCGG-AGCAAGCACACATCAGTTG 2259
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 2277 TATACTATAATAGACAAGGCACTAAAGATGCTCGGCTCGGGA-CAAGCACACATCAGTTG 2335
Query 2260 GACCGAGGCCTTAGATCAGAGCTCAAAAACAGTTGCTGGAAGAGTAGCCATGGTGCATCC 2319
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2336 GACCGAGGCCTTAGATCAGAGCTCAAAAACAGTAGCCGGAAGAGTAGCCATGGTGCATCC 2395
Query 2320 AGTTCTCACAAACCCGGATCCTCCGCAGCTCGTAAAGCACCAGCTTTGCAGAAACGGTCT 2379
|||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 2396 AGTTCTCACAAACCTGGATCCTCCACAGCTCGTAAAGCACCAGCATTGCAGAAACGGTCC 2455
Query 2380 AAGGAGAGAAGCAGCCGTCTTCCACCTGTGGGACACAAAATATCTACAGCTGCTGACGAG 2439
||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 2456 AAGGAGAGACGCAGCCGTCTTCCACCTGTGGGACACAAACTATCTCCAGCTGCTTACGAG 2515
Query 2440 AATTATCACGTTGCTACTGCTGATAGATTGTCTAGTCTGAGATCTGAGCTCTCTATGCGT 2499
||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||
Sbjct 2516 AATTATCACGTTGCTACTGGTGATAGATTGTCTAGTCTGAGAACTGAGCTCTCCATGCGA 2575
Query 2500 ATAAGTCGAAGTGAAGGAACTCTCGGACCTATCTGATCTCTCTCTC-CC-T-TT-CATTG 2555
| |||||||||||||||||||||||||||||||||||||||||||| || | || |||||
Sbjct 2576 AGAAGTCGAAGTGAAGGAACTCTCGGACCTATCTGATCTCTCTCTCTCCCTCTTTCATTG 2635
Query 2556 GCTGTGATTTCCTTTGCGAGGTAACGATGAAGATGTGATAGATATATATACTTTCTTCCC 2615
||| ||||||||| ||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 2636 CCTGCGATTTCCTTAGCGAGGTAACGATGAAGATGTGATAGATACACA--CTTTCTTCCC 2693
Query 2616 TTTATTCATCTTCTTCATCTTTGTGTTTTTGTTGTTGTGCATTACCATTTACATCAGAAG 2675
||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||
Sbjct 2694 TTTATTCATCTTCTTCATCTTTGTGTTTT-GTTGTTGTGCATTAC-AT--ACATCAGAAG 2749
Query 2676 CTTTGATTCTTTTAGCTTCTCAATAATGTCTGAAATTTGAAACCATGATATACATTCTTT 2735
||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 2750 CTTTGATTCTTATAGCTTCTCAATAATGTCTGAAATTGGAAACCATGGTATACATTCTTT 2809
Query 2736 TCAGCACAGTCTGAG 2750
|||||||||||||||
Sbjct 2810 TCAGCACAGTCTGAG 2824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136604585789
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5