BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490236
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03240.1 | Symbols: ATFH, FH | frataxin homolog | chr4:14234... 1249 0.0
> AT4G03240.1 | Symbols: ATFH, FH | frataxin homolog | chr4:1423445-1424772
REVERSE LENGTH=818
Length=818
Score = 1249 bits (676), Expect = 0.0
Identities = 771/817 (94%), Gaps = 5/817 (1%)
Strand=Plus/Plus
Query 1 GTGACAGAGCCGCCATGGCTACAGCTTCAAGG--T-TTCTACGGACATTGCCGAGGTTTC 57
|||||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||
Sbjct 1 GTGACAGAACCGCCATGGCTACAGCTTCAAGGTTTCTTCTACGGAAATTGCCGAGGTTTC 60
Query 58 TCAAGCTTTCTCCAACCCTTCTCCGTAGCAATGGCGTAAGATTTTCAAGCAATTTGATTC 117
||||||| |||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 61 TCAAGCTGTCTCCAACTCTTCTCCGTAGCAATGGCGTAAGAGTTTCAAGCAATCTGATTC 120
Query 118 AGGGTTCCATAGAACCGTTGGGTTCCTTCTGGCGAATAGGATCTCGAATCAGCCATGATT 177
| | ||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct 121 AAGATTCCATAGAACCGTTGGATTCCTTCTGGAGAATAGGATCTCGAATCCGCCATGATT 180
Query 178 CTTTTACTACCAGAAGCTTCTCTTCTCAAGGTCCTGCTTCTGTCGATTATAGTTCGGTTT 237
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 CTTTGACTACCAGAAGCTTCTCTTCTCAAGGTCCTGCTTCTGTCGATTACAGTTCGGTTT 240
Query 238 TGCAGGAGGATGAGTTTCACAAATTAGCCAACTTCACAATAAATCACCTTCTTGAGAAAA 297
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 TGCAGGAGGAAGAGTTTCACAAATTAGCCAACTTCACAATTAATCACCTTCTTGAGAAAA 300
Query 298 TTGAGGATTATGGTGATAATGTTCAGATTGATGGTTTCGACATAGATTATGGGAATGAAG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGAGGATTATGGTGATAATGTTCAGATTGATGGTTTCGACATAGATTATGGGAATGAAG 360
Query 358 TTCTTACCCTTAAGCTTGGATCTTTAGGCACATATGTACTGAATAAGCAAACTCCAAATC 417
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 TTCTTACCCTTAAGCTTGGATCTTTAGGCACTTATGTACTGAATAAGCAAACTCCAAATC 420
Query 418 GACAAATCTGGATGTCTTCACCCGTGAGTGGCCCTTCTAGATTCGACTGGGATCGTGATG 477
|||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 421 GACAAATCTGGATGTCTTCACCTGTGAGTGGCCCTTCTAGATTTGACTGGGACCGTGATG 480
Query 478 CTAATGCATGGATTTACCGTAGAACCGAAGCAAAGTTGCATAAACTCCTGGAAGAGGAGT 537
||||||| ||||| || || |||| ||||||||||||||||||||||||||||||||||
Sbjct 481 CTAATGCGTGGATATATCGGCGAACTGAAGCAAAGTTGCATAAACTCCTGGAAGAGGAGT 540
Query 538 TAGAGAATCTATGTGGTGAACCAATCCAACTCTCATAAAGAAGGCTTTAAAACAATATTT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TAGAGAATCTATGTGGTGAACCAATCCAACTCTCATAAAGAAGGCTTTAAAACAATATTT 600
Query 598 TT-AGCCAAAGGGTTTCATCTAGGAACTTGAAACTGCTATACCCTTTTAAAGGTATATCT 656
| ||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 601 GTGAGCGAAAGGGTTTCATCTATGAACTTGAAACTGCTATACCCTGTTAAAGGTATATCT 660
Query 657 ATGAAACATCCAGAGGAATAAACAAACAAGGCACAAGACAAAGTTGTTTCAGTGTGAAAC 716
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 661 ATGAAACATCCAGAGGAATAAACAAACAAGGCAGAAGACAAAGTTGTTTTAGTGTGAAAA 720
Query 717 CCGATTAGTGTTTGTGAATCTACTTT-AAACAGTAATTTTTCATAGTGACATTGTTACTA 775
| ||||||||||| |||||||| ||| |||||||||| | |||||||||||||||| | |
Sbjct 721 CTGATTAGTGTTTCTGAATCTATTTTTAAACAGTAATGTCTCATAGTGACATTGTTGCAA 780
Query 776 GTCTCTTTGTTTAATCAGAGCTGAAGCTTCTTTTTAC 812
|||||||||||||||||||||||||||| | ||||||
Sbjct 781 GTCTCTTTGTTTAATCAGAGCTGAAGCTGCCTTTTAC 817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39534273689
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5