BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490236 Length=812 Score E Sequences producing significant alignments: (Bits) Value AT4G03240.1 | Symbols: ATFH, FH | frataxin homolog | chr4:14234... 1249 0.0 > AT4G03240.1 | Symbols: ATFH, FH | frataxin homolog | chr4:1423445-1424772 REVERSE LENGTH=818 Length=818 Score = 1249 bits (676), Expect = 0.0 Identities = 771/817 (94%), Gaps = 5/817 (1%) Strand=Plus/Plus Query 1 GTGACAGAGCCGCCATGGCTACAGCTTCAAGG--T-TTCTACGGACATTGCCGAGGTTTC 57 |||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||||| Sbjct 1 GTGACAGAACCGCCATGGCTACAGCTTCAAGGTTTCTTCTACGGAAATTGCCGAGGTTTC 60 Query 58 TCAAGCTTTCTCCAACCCTTCTCCGTAGCAATGGCGTAAGATTTTCAAGCAATTTGATTC 117 ||||||| |||||||| |||||||||||||||||||||||| ||||||||||| |||||| Sbjct 61 TCAAGCTGTCTCCAACTCTTCTCCGTAGCAATGGCGTAAGAGTTTCAAGCAATCTGATTC 120 Query 118 AGGGTTCCATAGAACCGTTGGGTTCCTTCTGGCGAATAGGATCTCGAATCAGCCATGATT 177 | | ||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| Sbjct 121 AAGATTCCATAGAACCGTTGGATTCCTTCTGGAGAATAGGATCTCGAATCCGCCATGATT 180 Query 178 CTTTTACTACCAGAAGCTTCTCTTCTCAAGGTCCTGCTTCTGTCGATTATAGTTCGGTTT 237 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 181 CTTTGACTACCAGAAGCTTCTCTTCTCAAGGTCCTGCTTCTGTCGATTACAGTTCGGTTT 240 Query 238 TGCAGGAGGATGAGTTTCACAAATTAGCCAACTTCACAATAAATCACCTTCTTGAGAAAA 297 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 241 TGCAGGAGGAAGAGTTTCACAAATTAGCCAACTTCACAATTAATCACCTTCTTGAGAAAA 300 Query 298 TTGAGGATTATGGTGATAATGTTCAGATTGATGGTTTCGACATAGATTATGGGAATGAAG 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTGAGGATTATGGTGATAATGTTCAGATTGATGGTTTCGACATAGATTATGGGAATGAAG 360 Query 358 TTCTTACCCTTAAGCTTGGATCTTTAGGCACATATGTACTGAATAAGCAAACTCCAAATC 417 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 361 TTCTTACCCTTAAGCTTGGATCTTTAGGCACTTATGTACTGAATAAGCAAACTCCAAATC 420 Query 418 GACAAATCTGGATGTCTTCACCCGTGAGTGGCCCTTCTAGATTCGACTGGGATCGTGATG 477 |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| Sbjct 421 GACAAATCTGGATGTCTTCACCTGTGAGTGGCCCTTCTAGATTTGACTGGGACCGTGATG 480 Query 478 CTAATGCATGGATTTACCGTAGAACCGAAGCAAAGTTGCATAAACTCCTGGAAGAGGAGT 537 ||||||| ||||| || || |||| |||||||||||||||||||||||||||||||||| Sbjct 481 CTAATGCGTGGATATATCGGCGAACTGAAGCAAAGTTGCATAAACTCCTGGAAGAGGAGT 540 Query 538 TAGAGAATCTATGTGGTGAACCAATCCAACTCTCATAAAGAAGGCTTTAAAACAATATTT 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TAGAGAATCTATGTGGTGAACCAATCCAACTCTCATAAAGAAGGCTTTAAAACAATATTT 600 Query 598 TT-AGCCAAAGGGTTTCATCTAGGAACTTGAAACTGCTATACCCTTTTAAAGGTATATCT 656 | ||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 601 GTGAGCGAAAGGGTTTCATCTATGAACTTGAAACTGCTATACCCTGTTAAAGGTATATCT 660 Query 657 ATGAAACATCCAGAGGAATAAACAAACAAGGCACAAGACAAAGTTGTTTCAGTGTGAAAC 716 ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 661 ATGAAACATCCAGAGGAATAAACAAACAAGGCAGAAGACAAAGTTGTTTTAGTGTGAAAA 720 Query 717 CCGATTAGTGTTTGTGAATCTACTTT-AAACAGTAATTTTTCATAGTGACATTGTTACTA 775 | ||||||||||| |||||||| ||| |||||||||| | |||||||||||||||| | | Sbjct 721 CTGATTAGTGTTTCTGAATCTATTTTTAAACAGTAATGTCTCATAGTGACATTGTTGCAA 780 Query 776 GTCTCTTTGTTTAATCAGAGCTGAAGCTTCTTTTTAC 812 |||||||||||||||||||||||||||| | |||||| Sbjct 781 GTCTCTTTGTTTAATCAGAGCTGAAGCTGCCTTTTAC 817 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39534273689 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5