BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490237
Length=2559
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03230.1 | Symbols: | S-locus lectin protein kinase family ... 2091 0.0
> AT4G03230.1 | Symbols: | S-locus lectin protein kinase family
protein | chr4:1419278-1423337 REVERSE LENGTH=3258
Length=3258
Score = 2091 bits (1132), Expect = 0.0
Identities = 1238/1290 (96%), Gaps = 4/1290 (0%)
Strand=Plus/Plus
Query 1 ATGAATT-TTTCTGTCTTCTTCTATATGTTTTTGCTGCATATTTTTCGATTTGATTGCTT 59
||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||| ||
Sbjct 226 ATG-ATTCTTTCTGTCTTCTTCTATATGTTTTTGCTGCATATTCGTCGATTAGATTGTTT 284
Query 60 TGTTGCAGTTCAAGACTCCAAAACATTGTTCAAAGGTTCAACATTGATCAATGACAGCCA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 TGTTGCAGTTCAAGACTCCAAAACATTGTTCAAAGGTTCAACATTGATCAATGACAGCCA 344
Query 120 CGGAGACACTCTTGTTTCAGCTGGTCAGAGATTTGAGCTTGGCTTCTTCACTCCAAATGG 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 345 TGGAGAGACTCTTGTTTCAGCTGGTCAGAGATTTGAGCTTGGCTTCTTCACTCCTAATGG 404
Query 180 AAGCTCCGATGAAAGGAGGTACTTAGGGATTTGGTTTTACAATTTACATCCACTTACTGT 239
||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 405 AAGCTCCGACGAAAGAAGGTACTTAGGGATTTGGTTTTACAATTTACATCCACTGACTGT 464
Query 240 TGTCTGGGTTGCAAATCGTGAATCTCCGGTTCTTGACCGTTCCGGCATTTTCACCATCTC 299
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 465 TGTCTGGGTTGCAAATCGTGAATCTCCGGTTCTTGACCGTTCCTGCATTTTCACCATCTC 524
Query 300 TAAAGAAGGCAATCTTGAAGTTATTGATTCTAAGGGAAAAGTGTATTGGGACACCGGTGT 359
|||||| || |||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 525 TAAAGATGGGAATCTTGAAGTTATTGATTCAAAGGGAAGAGTGTATTGGGACACCGGTGT 584
Query 360 TGGACCTTCCTTAGTCTCTGCGCAGAGAACT-GTAAAGCTGATGGATAATGGTAATCTTG 418
| |||||||| ||| |||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 585 TAAACCTTCCTCAGTATCTGCGGAGAGAA-TGGTAAAGCTGATGGATAATGGTAATCTTG 643
Query 419 TGTTGATGAGAGATGGAGATGAAGCAAATGTGGTTTGGCAGAGTTTTCAGAATCCTACTG 478
||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TGTTGATTAGTGATGGAAATGAAGCAAATGTGGTTTGGCAGAGTTTTCAGAATCCTACTG 703
Query 479 ATACATTTCTCCCAGGGATGATGATGAATGAGAATATGACTTTATCATCATGGAGGAGCT 538
||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||
Sbjct 704 ATACATTTCTCCCAGGGATGAGGATGGATGAGAATATGACTTTATCATCATGGAGAAGCT 763
Query 539 TCAACGATCCATCACCTGGAAATTTCACATTTCAGATGGATCAAGAAGAAGACAAACAGT 598
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 764 TCAACGATCCATCACATGGAAATTTCACCTTTCAGATGGATCAAGAAGAAGACAAACAGT 823
Query 599 TTATCATTTGGAAAAGATCAATGAGATACTGGAAATCCGGAATTTCGGGTAAATTCATCG 658
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 824 TCATCATTTGGAAAAGATCAATGAGATACTGGAAATCCGGAATTTCGGGTAAATTCATAG 883
Query 659 GATCCGACGAGATGCCTTACGCAATTTCATACTTTCTTTCCAATTTTACAGAGACTGTAA 718
||||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||| |
Sbjct 884 GATCCGACGAGATGCCTTATGCGATTTCTTACTTTCTTTCCAATTTCACAGAGACTGTTA 943
Query 719 CTGTCCACAATGCCTCTGTGCCTCCTCTCTTCACATCTTTGTATACCAATACAAGGTTCA 778
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 CTGTTCACAATGCCTCTGTGCCTCCTCTCTTCACATCTTTGTATACCAATACAAGGTTCA 1003
Query 779 CCATGAGCTCCTCTGGCCAAGCTCAGTACTTCAGGTTAGATGGAGAAAGATTCTGGGCAC 838
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 CCATGAGCTCCTCTGGTCAAGCTCAGTACTTCAGGTTAGATGGAGAAAGATTCTGGGCAC 1063
Query 839 AGATTTGGGCTGAACCTAGAGATGAATGTAGTGTCTACAATGCTTGTGGAAATTTTGGTA 898
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1064 AGATTTGGGCTGAACCTAGAGATGAATGTAGTGTATACAATGCTTGTGGAAATTTTGGTA 1123
Query 899 GCTGTAACAGCAAGAATGAGGAGATGTGTAAGTGTTTGCCAGGTTTTAGGCCTAATTTCC 958
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1124 GCTGCAACAGCAAGAATGAGGAAATGTGTAAGTGTTTGCCAGGTTTTAGGCCTAATTTCC 1183
Query 959 TGGAGAAATGGGTCAAGGGAGATTTTTCTGGTGGATGTTCCAGGGAGTCAAGGATATGTG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1184 TGGAGAAATGGGTCAAGGGAGATTTTTCTGGTGGATGTTCCAGGGAGTCAAGGATCTGTG 1243
Query 1019 GTAAAGACGGTGTTGTGGTGGGAGACATGTTCTTGAATCTGACTGTGGTTGAAGTAGGAA 1078
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1244 GTAAAGACGGTGTTGTGGTGGGAGACATGTTCTTGAATCTGAGTGTGGTTGAAGTAGGAA 1303
Query 1079 GTCCGGATTCACAGTTTGATGCACATAATGAAAAAGACTGCAGAGCAGAGTGTTTGAATA 1138
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1304 GTCCGGATTCACAGTTTGATGCACATAATGAAAAAGAATGCAGAGCAGAGTGCTTGAATA 1363
Query 1139 ATTGCCAATGCCAAGCTTACTCATATGAAGAAGTTGATACACTTCAAAGCAATACCAAGT 1198
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1364 ATTGCCAATGCCAAGCTTACTCATATGAAGAAGTTGATATACTTCAAAGCAATACCAAGT 1423
Query 1199 GCTGGATTTGGTTGGAGGATCTCAATAATCTCAAGGAAGGCTATTTAGGTAGCCGCAATG 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1424 GCTGGATTTGGTTGGAGGATCTCAATAATCTCAAGGAAGGCTATTTAGGTAGCCGCAACG 1483
Query 1259 TATTCATTCGCGTAGCAGTTCCCGATATAG 1288
| |||||||||||||||||||| |||||||
Sbjct 1484 TTTTCATTCGCGTAGCAGTTCCAGATATAG 1513
Score = 2025 bits (1096), Expect = 0.0
Identities = 1206/1261 (96%), Gaps = 0/1261 (0%)
Strand=Plus/Plus
Query 1299 AGAACGAGCTCGTGGAAGATACAGAGAAGCTAAAACACCGGTGGTTTTGATCATTGTGGT 1358
|||||||| ||| ||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 1998 AGAACGAGGTCGAGGAAGATACGGGGAAGCTAAAACCCCGGTGGTTTTGATCATTGTGGT 2057
Query 1359 GACTTTTACAAGTGCAGCCATTCTGGTTGTTCTGTCAAGCACTGCTTCTTATGTGTATTT 1418
||| |||||||||||||| |||||||| |||||||||||||||||||| ||||| | |||
Sbjct 2058 GACGTTTACAAGTGCAGCTATTCTGGTCGTTCTGTCAAGCACTGCTTCCTATGTATTTTT 2117
Query 1419 GCAAAGAAGAAAAGTAAACAAGGAACTAGGAAGCATACCAAGAGGAGTTAATTTATGTGA 1478
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 2118 GCAAAGAAGAAAAGTAAACAAGGAACTAGGAAGTATACCAAGAGGAGTTCATTTATGTGA 2177
Query 1479 CAGTGAGAGACATATTAAAGATTTGATTGAATCAGGAAGGTTTAAACAAGATGATAGTCA 1538
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2178 CAGTGAGAGACATATCAAAGAATTGATTGAATCGGGAAGGTTTAAACAAGATGATAGTCA 2237
Query 1539 AGGCATAGATGTTCCATCTTTTGAGCTCGAGACCATCCTATATGCAACATCCAACTTCTC 1598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2238 GGGCATAGATGTTCCATCTTTTGAGCTCGAGACCATCCTATATGCAACATCCAACTTCTC 2297
Query 1599 AAATGCAAACAAGCTAGGCCAAGGAGGGTTTGGACCGGTTTATAAGGGAATATTTCCTGG 1658
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2298 AAATGCAAACAAGCTAGGCCAAGGAGGGTTTGGACCGGTTTATAAGGGAATGTTTCCTGG 2357
Query 1659 AGATCAAGAGATTGCTGTGAAGAGGTTATCTCGCTGCTCGGGTCAAGGACTGGAGGAATT 1718
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2358 AGATCAAGAGATTGCTGTGAAGAGGCTATCTCGCTGCTCGGGTCAAGGACTGGAGGAATT 2417
Query 1719 CAAGAATGAAGTTGTTTTGATTGCCAAGCTCCAACACCGGAATCTTGTTCGACTCCTTGG 1778
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2418 CAAGAATGAAGTTGTTTTGATTGCCAAGCTCCAACACCGGAATCTTGTTCGACTTCTTGG 2477
Query 1779 CTATTGTGTTGCTGGAGAGGAGAAACTGTTATTGTATGAATACATGCCTCACAAAAGCTT 1838
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 2478 CTATTGTGTTGCTGGAGAAGAGAAACTGTTATTGTATGAATACATGCCACACAAAAGCTT 2537
Query 1839 AGACTTCTTCATCTTTGATCGGAAGCTTTGCCAGCGGTTAGATTGGAAGACGCGTTGTAA 1898
||||||||||||||| || ||||||||||||||||| ||||||||||||| |||||||||
Sbjct 2538 AGACTTCTTCATCTTCGACCGGAAGCTTTGCCAGCGATTAGATTGGAAGATGCGTTGTAA 2597
Query 1899 TATCATTCTAGGAATCGCTCGTGGACTTCTCTATCTGCATCAAGACTCTAGACTGAGAAT 1958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2598 TATCATTCTAGGAATCGCTCGTGGACTTCTCTATCTGCATCAAGACTCTAGACTGAGAAT 2657
Query 1959 CATTCACAGGGATTTAAAAACAAGCAACATTCTGTTAGATGAGGAAATGAATCCAAAGAT 2018
||| ||||| ||| |||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 2658 CATCCACAGAGATCTAAAAACAAGCAACATTCTGTTAGATGAAGAGATGAATCCCAAGAT 2717
Query 2019 CTCTGACTTTGGCTTGGCTAGAATATTTGGAGGCAGTGAAACTTCAGCCAATACTAATCG 2078
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 2718 CTCTGACTTTGGCTTGGCTAGAATATTTGGAGGCAGTGAAACATCAGCCAATACTAATAG 2777
Query 2079 AGTTGTTGGAACCTATGGATACATGTCTCCAGAGTATGCTCTAGAAGGTCTTTTCTCATT 2138
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2778 AGTTGTTGGAACCTATGGATACATGTCTCCAGAGTATGCTTTAGAAGGTCTTTTCTCATT 2837
Query 2139 CAAATCAGATGTCTTCAGTTTCGGCGTGGTTGTGATTGAAACTATCAGCGGGAAGCGTAA 2198
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2838 CAAATCAGATGTCTTTAGTTTCGGCGTGGTTGTGATTGAAACTATCAGCGGGAAGCGTAA 2897
Query 2199 CACCGGGTTTTATGAACCTGAGAAATCTTTAAGCCTTCTAGGCTATGCGTGGGATCTCTG 2258
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2898 CACCGGGTTTCATGAACCTGAGAAATCTTTAAGCCTTCTAGGCCATGCGTGGGATCTCTG 2957
Query 2259 GAAAGCGGAAAGAGGGATTGAGTTATTGGATCAGGCTTTAAAAGAATCGTGCAAAACCGA 2318
|||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 2958 GAAAGCGGAAAGGGGGATTGAGTTATTGGATCAGGCTTTACAAGAATCATGCGAAACCGA 3017
Query 2319 AGAATTTTTGAAGTGCTTGAACGTAGGACTGCTTTGTATTCAAGAAGATCCTAATGATCG 2378
| ||| ||||||||||||||||||||||| || ||| | ||||||||||||||||||||
Sbjct 3018 GGGATTCTTGAAGTGCTTGAACGTAGGACTTCTCTGTGTACAAGAAGATCCTAATGATCG 3077
Query 2379 TCCTACAATGTCAAATGTTGTTTTCATGCTCGGAAGCAGCGAAGCTGCTACTCTTCCTAC 2438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3078 TCCTACAATGTCAAATGTTGTTTTCATGCTCGGAAGCAGCGAAGCTGCTACTCTTCCTAC 3137
Query 2439 TCCAAGACAACCAGCTTTTGTCCTTAGACGTTGCGCTTCATCAAGCAAAGCTTCTTCATC 2498
||||| |||||| |||||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 3138 TCCAAAACAACCGGCTTTTGTTCTTAGACGTTGCCCTTCATCAAGCAAAGCTTCCTCATC 3197
Query 2499 CACCAAGCCAGAAACATGCTCTGAAAATGAGCTTACCATAACTCTTGAAGATGGAAGATA 2558
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3198 CACCAAGCCAGAAACTTGCTCTGAAAATGAGCTTACCATAACTCTTGAAGATGGAAGATA 3257
Query 2559 A 2559
|
Sbjct 3258 A 3258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127022699676
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5