BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490240
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03210.1 | Symbols: XTH9 | xyloglucan endotransglucosylase/h... 1578 0.0
> AT4G03210.1 | Symbols: XTH9 | xyloglucan endotransglucosylase/hydrolase
9 | chr4:1415949-1417327 FORWARD LENGTH=1073
Length=1073
Score = 1578 bits (854), Expect = 0.0
Identities = 987/1049 (94%), Gaps = 17/1049 (2%)
Strand=Plus/Plus
Query 1 TTCATTGAGTCAAGTGTTTGAGACTGTAGAGTGAAAGTTTGATTTA---AGAGAGAT--- 54
|||||||||||||||| | |||||||||||||| |||||||||||| ||||||||
Sbjct 1 TTCATTGAGTCAAGTGCTCGAGACTGTAGAGTG-AAGTTTGATTTATTTAGAGAGATAAG 59
Query 55 TT---aaaaaaaTGGTGGGTATGGATTTGTTCAAATGTGTGATGATGATAATGGTGTTGG 111
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 60 TTAAAAAAAAAATGGTCGGTATGGATTTGTTCAAATGTGTAATGATGATAATGGTGTTGG 119
Query 112 TTATCTCTTGTGGTGAAGCTGTTTCTGGAGCTAAGTTCGATGAGCTTTATCGCTCAAGCT 171
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 120 TTGTCTCTTGTGGTGAAGCTGTTTCTGGAGCTAAGTTCGATGAGCTTTATCGGTCAAGCT 179
Query 172 GGGCTATGGATCATTGTGTCAACGAAGGCGAAGTCACAAAACTCAAGCTTGACAATTACT 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGGCTATGGATCATTGTGTCAACGAAGGCGAAGTCACAAAACTCAAGCTTGACAATTACT 239
Query 232 CTGGAGCTGGGTTTGAATCGAGAAGCAAATACTTGTTTGGTAAAGTCTCTATCCAGATTA 291
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTGGAGCTGGGTTTGAATCAAGAAGCAAATACTTGTTTGGTAAAGTCTCTATCCAGATTA 299
Query 292 AGCTTGTTGAGGGTGATTCAGCTGGAACAGTCACTGCTTTCTACATGTCTTCTGATGGTC 351
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 300 AGCTTGTTGAGGGTGATTCAGCAGGAACAGTCACTGCTTTCTACATGTCTTCAGATGGTC 359
Query 352 CTAACCACAACGAATTCGATTTCGAGTTCTTAGGGAACACAACCGGTGAGCCTTATATAG 411
| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||
Sbjct 360 CGAACCACAACGAATTCGATTTTGAGTTCTTAGGGAACACTACCGGCGAGCCTTACATAG 419
Query 412 TCCAGACCAATATCTACGTGAACGGAGTTGGAAACAGAGAACAAAGACTCAACCTTTGGT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCCAGACCAATATCTACGTGAACGGAGTTGGAAACAGAGAACAAAGACTCAACCTTTGGT 479
Query 472 TCGATCCCACCACTGAGTTTCACACTTACTCAATCCTCTGGAGTAAACGCAGTGTTGTAT 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCGATCCCACCACTGAGTTTCACACTTACTCAATCCTCTGGAGTAAACGCAGTGTTGTAT 539
Query 532 TCATGGTAGACGAAACTCCGATTCGAGTCCAGAAGAATCTTGAAGATAAAGGTATCCCAT 591
|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 540 TCATGGTAGACGAAACACCGATTCGAGTTCAGAAGAATCTTGAAGAGAAAGGTATCCCAT 599
Query 592 TTGCTAAAGATCAAGCAATGGGAGTATACAGTTCGATTTGGAATGCTGATGATTGGGCAA 651
|||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||| |
Sbjct 600 TTGCTAAAGATCAAGCAATGGGTGTTTACAGCTCCATTTGGAATGCAGATGATTGGGCTA 659
Query 652 CACAAGGAGGTCTTGTTAAAACTGATTGGAGTCACGCTCCTTTCGTTGCTTCTTACAAGG 711
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 660 CACAAGGAGGTCTTGTTAAAACTGATTGGAGTCACGCTCCTTTCGTTGCTTCTTACAAAG 719
Query 712 AATTCCAAATCGATGCTTGTGAGATTCCAACAACTTCTGATCTAAGCAAGTGTAATGGGG 771
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
Sbjct 720 AATTCCAAATCGATGCATGTGAGATTCCAACAACTACTGATCTAAGCAAGTGTAATGGAG 779
Query 772 ATCAAAAGTTTTGGTGGGATGAACCAACTGTCTCTGAGCTAAGCCTTCATCAGAATCATC 831
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 780 ACCAGAAGTTTTGGTGGGATGAACCAACTGTCTCTGAGCTTAGCCTTCATCAGAATCATC 839
Query 832 AGCTTATTTGGGTTCGAGCTAATCATATGATTTATGATTATTGTTTTGATGCTACTAGGT 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGCTTATTTGGGTTCGAGCTAATCATATGATTTATGATTATTGTTTTGATGCTACTAGGT 899
Query 892 TTCCTGTTACTCCTCTTGAGTGCCAACATCATCGTCATTTGTAGTTTT-A-ATGTCGTCT 949
||||||||||||||||||||||||||||||||||||||||||||||| | || | |||
Sbjct 900 TTCCTGTTACTCCTCTTGAGTGCCAACATCATCGTCATTTGTAGTTTAGAGAT-TAGTCA 958
Query 950 TCTTTAAGGAATT-AGCCAAGATAAAACATGTGGTGGCTCTTTGATGATTCTGTTTTA-T 1007
||| ||| | | |||| || ||||||||| ||||||||||||||||||||| |
Sbjct 959 AGAATAAA-AATGGATC-AAGAGAACACATGTGGTTACTCTTTGATGATTCTGTTTTAAT 1016
Query 1008 GTATAAATAATCAATTTTCTATTGATTTT 1036
||||||||||||||| |||||||||||||
Sbjct 1017 GTATAAATAATCAATCTTCTATTGATTTT 1045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5