BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490244
Length=1966
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRR1-like protein 1... 3136 0.0
> AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRR1-like protein
1 | chr4:1404887-1407139 REVERSE LENGTH=2061
Length=2061
Score = 3136 bits (1698), Expect = 0.0
Identities = 1891/1982 (95%), Gaps = 22/1982 (1%)
Strand=Plus/Plus
Query 1 AAATCTCAAACCtttttttttCATTTCTT------GAtctctctct--ctctG-TTCTGA 51
|||||||||||| ||||| |||||||||| ||||||||| ||||| ||||||
Sbjct 25 AAATCTCAAACC-TTTTTCTTCATTTCTTCCCCCCTCTCTCTCTCTCACTCTGTTTCTGA 83
Query 52 TGGGTCTCCGATTACCATCTAAGGT-TCTGGAACATATCCTCTCCTTCATTGATTCCAAC 110
||||||||||||| ||| ||||||| | ||||||||||||||||||||||||||||||||
Sbjct 84 TGGGTCTCCGATTCCCACCTAAGGTGT-TGGAACATATCCTCTCCTTCATTGATTCCAAC 142
Query 111 GAGGACCGGAACTCTGTTTCTCTGGTCTGCAAGTCATGGTTCGAGACAGAGCGGAAGACT 170
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 143 GAGGACCGGAACTCTGTTTCTCTGGTCTGCAAGTCATGGTTTGAGACAGAACGGAAGACT 202
Query 171 AGGAAGCGGGTCTTTGTCGGAAACTGTTACGCGGTTAGTCCTGCTGCAGTTGCAAAG-CG 229
|||||||| |||||||||||||||||||||||||| ||||||||||| ||| | | | ||
Sbjct 203 AGGAAGCGAGTCTTTGTCGGAAACTGTTACGCGGTCAGTCCTGCTGCGGTTAC-ACGACG 261
Query 230 GTTCCCGGAGATGAGATCTTTGACTTTGAAGGGGAAGCCACACTTCGCCGACTATAATTT 289
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 262 GTTCCCGGAGATGAGATCTTTGACTTTGAAGGGGAAGCCACACTTCGCTGACTATAATCT 321
Query 290 GGTTCCTGATGGTTGGGGTGGTTATGCTTGGCCGTGGATTGAAGCCATGGCGGCGAAATG 349
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 322 CGTTCCTGATGGTTGGGGTGGTTATGCTTGGCCGTGGATTGAAGCTATGGCGGCGAAAAG 381
Query 350 TTCGTCTCTTGAGGAGATCAGATTGAAGAGAATGGTGGTGACTGATGAATGCTTAGAAAA 409
|||||||||||| ||||||||| ||||||| ||||||||||||||||| |||||||| ||
Sbjct 382 TTCGTCTCTTGAAGAGATCAGAATGAAGAGGATGGTGGTGACTGATGAGTGCTTAGAGAA 441
Query 410 AATTGCTGCTTCGTTTAAGGATTTTAAAGTCCTTGTATTGACTTCTTGTGAAGGTTTCTC 469
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 442 AATTGCTGCTTCGTTTAAGGATTTTAAAGTCCTTGTGTTGACTTCTTGTGAAGGTTTCTC 501
Query 470 TACTGATGGTATCGCTGCTATTGCAGCAACTTGCAGAAACTTGAGAGTGTTGGAACTACG 529
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 502 TACTGATGGTATCGCTGCTATTGCAGCTACTTGCAGGAACTTGAGAGTGTTGGAACTACG 561
Query 530 AGAGTGTATTGTTGAAGATCTAGGAGGAGATTGGCTTAGCTATTTTCCAGAGACTTCAAC 589
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 562 AGAGTGTATTGTTGAAGATTTAGGAGGAGATTGGCTTAGCTATTTTCCAGAGAGTTCAAC 621
Query 590 TTCTCTGGTCTCTCTTGACTTCTCTTGTTTAGATTCTGAGGTTAAAATCTCGGACTTAGA 649
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 622 TTCTTTGGTCTCTCTTGACTTCTCTTGTTTAGATTCTGAGGTTAAAATCTCGGATTTAGA 681
Query 650 GCGTCTCGTGAGCAGATCTCCAAACCTGAAGTCTCTAAAGTTGAATCCAGCTGTGACTCT 709
|||||| |||||||||||||||||| |||||||| | |||||||||||||||||||||||
Sbjct 682 GCGTCTTGTGAGCAGATCTCCAAACTTGAAGTCTTTGAAGTTGAATCCAGCTGTGACTCT 741
Query 710 AGATGGACTTGTTAGCTTACTTCGTCGTGCTCCACAACTGACTGAGCTCGGCACAGGTTC 769
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 742 AGATGGACTCGTTAGCTTACTTCGTTGTGCTCCACAACTGACTGAGCTCGGCACAGGTTC 801
Query 770 TTTCGCAGCTCAACTGAAACCAGAAGCGTTTTCAAAGTTATCAGAAGCTTTTTCAAACTG 829
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 802 TTTCGCAGCTCAATTGAAACCTGAAGCGTTTTCAAAGTTATCAGAAGCTTTTTCAAACTG 861
Query 830 TAAGCAACTTCAGAGCTTATCTGGTCTCTGGGATGTCCTCCCTGAATATCTTCCAGCTCT 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 TAAGCAACTTCAGAGCTTATCTGGTCTCTGGGATGTCCTCCCTGAATATCTTCCAGCTCT 921
Query 890 TTATTCTGTCTGTCCTGGTCTTACCTCGTTGAACTTGAGCTACGCTACTGTCCGAATGCC 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 TTATTCTGTCTGTCCTGGTCTTACCTCGTTGAACTTGAGCTACGCTACTGTCCGAATGCC 981
Query 950 TGATCTTGTCGAGCTTCTTAGGCGATGCTCGAAACTGCAGAAGCTATGGGTGATGGACTT 1009
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 TGATCTTGTTGAGCTTCTTAGGCGATGCTCGAAACTGCAGAAGCTATGGGTGATGGACTT 1041
Query 1010 GATAGAGGACAAAGGTCTTGAAGCTGTTGCCTCCTATTGCAAGGAACTGCGAGAACTGAG 1069
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1042 GATTGAGGACAAAGGTCTTGAAGCTGTTGCCTCATATTGCAAGGAACTGCGAGAACTGAG 1101
Query 1070 GGTGTTTCCATCTGCGCCAGATCTCGATG-AAGCCAACATACCTCTGACGGAACAAGGCC 1128
|||||||||||||| ||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 1102 GGTGTTTCCATCTGAGCCAGATCTTGATGCAA-CCAACATACCTCTGACGGAACAAGGCC 1160
Query 1129 TGGTCTTTGTGTCTAAAGGCTGTCGAAAGCTGGAGTCTGTTCTCTACTTCTGTGTCCAGT 1188
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1161 TGGTCTTTGTGTCTAAAGGCTGTCGAAAGCTTGAGTCTGTTCTCTACTTCTGTGTCCAGT 1220
Query 1189 TCACAAACGCAGCTTTGCTTACCATAGCAAGAAAACGTCCGAATCTCAAGTGCTTCCGTC 1248
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 TCACAAACGCAGCTTTGTTTACCATAGCAAGAAAACGTCCGAATCTCAAGTGCTTCCGTC 1280
Query 1249 TCTGTGTGATAGAGCCATTTGCTCCTGATTACAAAACAAATGAGCCACTTGATAAAGGAT 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 TCTGTGTGATAGAGCCATTTGCTCCTGATTACAAAACAAATGAGCCACTTGATAAAGGAT 1340
Query 1309 TCAAAGCAATAGCTGAGGGATGCAAGGATCTTCGACGGCTCTCCGTCTCTGGTCTCCTCT 1368
||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1341 TCAAAGCCATAGCTGAGGGATGCAGGGATCTTCGACGGCTCTCCGTCTCTGGTCTTCTCT 1400
Query 1369 CCGACAAGGCCTTCAAATACATTGGGAAACATGCAAAGAAGGTAAGGATGCTATCAATAG 1428
| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1401 CTGACAAGGCCTTCAAATACATTGGGAAACATGCCAAGAAGGTTAGGATGCTATCAATAG 1460
Query 1429 CATTTGCTGGGGACAGTGATTTGATGCTTCATCACTTGTTGTCGGGCTGTGAGAGTTTAA 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 CATTTGCTGGGGACAGTGATTTGATGCTTCATCACTTGTTGTCGGGCTGTGAGAGTTTAA 1520
Query 1489 AGAAGCTTGAGATAAGAGATTGCCCTTTCGGAGACACTGCACTACTGGAGCACGCTGCCA 1548
|||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1521 AGAAGCTTGAGATACGAGACTGCCCTTTTGGAGACACTGCACTACTGGAGCACGCTGCCA 1580
Query 1549 AACTGGAAACCATGCGATCCCTTTGGATGTCGTCTTGCTTTGTAAGTTTTGGTGCTTGCA 1608
| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1581 AGCTAGAGACCATGCGATCCCTTTGGATGTCATCTTGCTTTGTAAGTTTTGGTGCTTGCA 1640
Query 1609 AGCTTCTAAGTCAGAAAATGCCAAGGCTCAATGTCGAAGTTATTGATGAACATCCTCCGG 1668
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1641 AGCTTCTAAGTCAGAAAATGCCAAGGCTCAATGTCGAAGTCATTGATGAACATCCTCCAG 1700
Query 1669 AGACAAGACCTGAGAGCTCTCCAGTTGAGAGGATATACATATATAGAACAGTCGCTGGAC 1728
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1701 AGTCAAGACCTGAGAGCTCTCCAGTTGAGAGGATATACATATACAGAACAGTCGCAGGAC 1760
Query 1729 CGAGAATGGACACGCCTGAATTTGTGTGGACGATTCACAAGAATCCTGAGA-TCGGAGTT 1787
|||||||||| ||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 1761 CGAGAATGGATACGCCTGAATTTGTGTGGACGATACACAAGAATCCTGAGAAT-GGAGTT 1819
Query 1788 TCACATCTAGCCATAAAGTAACCTTGCTGCTTCAGTCATATTTTCCTTATC-ATCTTGAG 1846
||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct 1820 TCACATCTAGCCATAAAGTAAACTTGCTGCTTCAGTCATATTTTCCTT-TCCATCTTCAG 1878
Query 1847 TTTTTGCAGACATTGTTGTGGGAGA--TTCACCTTCCATTTGTTCCCTTTCATATTGTTT 1904
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1879 TTTTTGCAGACATTGTTGTGGGAGAGATTCACCTTCCATTTGTTCCCTTTCATATTGTTT 1938
Query 1905 TCACTAAGATGTTAGAATATCAGTTATAGAAGCATTTCATAGCTTGTACTCTGTTAAACA 1964
| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1939 TTACTAAGATATTAGAATATCAGTGATAGAAGCATTTCATAGCTTGTACTCTGTTAAACA 1998
Query 1965 AA 1966
||
Sbjct 1999 AA 2000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97389057300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5