BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490246

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G03153.1 | Symbols:  | Kinase interacting (KIP1-like) family...   220    8e-57


> AT4G03153.1 | Symbols:  | Kinase interacting (KIP1-like) family 
protein | chr4:1394845-1395588 REVERSE LENGTH=648
Length=648

 Score =  220 bits (119),  Expect = 8e-57
 Identities = 170/193 (88%), Gaps = 10/193 (5%)
 Strand=Plus/Plus

Query  124  GAGAATAAGCCAAAGCTCATTGCCA-TGGTAGAGGATTTATACCGCTCGCATCGCTCATT  182
            ||||||||||||||||||||||  | || | ||||| |||||||| || |||||||| ||
Sbjct  178  GAGAATAAGCCAAAGCTCATTG-AATTGCTCGAGGAATTATACCGTTCACATCGCTCTTT  236

Query  183  GGCGCAGAAGCATGATCTCTTGATCAAAACCTCTTCTCTGAATTCGGACAGCACAGCCAT  242
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    |
Sbjct  237  GGCGCAGAAGCATGATCTCTTGATCAAAACCTCTTCTCTGAATTCGGACAGC-CA----T  291

Query  243  AACTCATCAACCTGCGACGAGCTCCGGTCGGAATTGTGTGAAGAAACAGAGTC-T--GAT  299
            ||||||||| | ||||||||| |||| |||||| ||||||||||||||||||| |  |||
Sbjct  292  AACTCATCATCATGCGACGAGATCCGATCGGAAGTGTGTGAAGAAACAGAGTCGTCTGAT  351

Query  300  GGTGAAGCTGAAA  312
            | |||||||||||
Sbjct  352  GTTGAAGCTGAAA  364


 Score =  137 bits (74),  Expect = 8e-32
 Identities = 78/80 (98%), Gaps = 0/80 (0%)
 Strand=Plus/Plus

Query  2   TGAGACATCAAAATGGTGGTGGATTGGTGCAAATCACAACACATCAAATTCCTCTCCTTG  61
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  6   TGAGACATCAAAATGGTGGTGGATTGGTGCAAATCACAACACATCAAATTCCTCGCCTTG  65

Query  62  GCTTAACACTACTCTCTCTG  81
           ||||||| ||||||||||||
Sbjct  66  GCTTAACTCTACTCTCTCTG  85



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24363561295


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5