BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490249
Length=2289
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03130.1 | Symbols: | BRCT domain-containing DNA repair pro... 2704 0.0
> AT4G03130.1 | Symbols: | BRCT domain-containing DNA repair protein
| chr4:1387781-1390646 REVERSE LENGTH=2301
Length=2301
Score = 2704 bits (1464), Expect = 0.0
Identities = 1821/1989 (92%), Gaps = 41/1989 (2%)
Strand=Plus/Plus
Query 205 GGTCTCGACGAAGTGGTGGTGGATGATAGTGAGGATGAAGATGGAGGAGATGCAAGTGTC 264
||||||||| |||||||||||||||||||| ||| ||| || ||||| |||||||
Sbjct 238 GGTCTCGACCAAGTGGTGGTGGATGATAGT---GAT---GAT-GA--AGATGGAAGTGTC 288
Query 265 GCTGCTGGTGAGCCGATATGTTTGCGGGAGCTAAGCCCGAAAGCTGGAGATATACTTTTG 324
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 289 GCTGCTGGTGAGCCGATGTGTTTGCCGGAGCTAAGCCCGAAAGCTGGAGATATACTTTTG 348
Query 325 GAGTCTGATGGATCGAATGATCACGAATGTCAGATAGGAAAGCAAGAATCAAATTGTGAT 384
|||||||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 349 GAGTCTGATGGATCAAATGATCACGAATGTCAAACAGGCAAGCAAGAATCAAATTGTGAT 408
Query 385 ACTGTGACCGGTTTCCAAGGTTC-TTCGCGGATTACTGCTAATAGTCATGGTCCTGGGCT 443
|| |||||||||||||||||||| || |||||||||||||| ||| |||||||| |||||
Sbjct 409 ACAGTGACCGGTTTCCAAGGTTCATT-GCGGATTACTGCTAGTAGCCATGGTCCAGGGCT 467
Query 444 GGAACTTTTGGATTCTCAGGAACCAGGAGAGTCAACACAAGCAGATGCCCTTGGTTTTGT 503
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TGATTTTTTGGATTCTCAAGAACCAGGAGAGTCAACACAAGCAGATGCCCTTGGTTTTGT 527
Query 504 GGATCAATTTCTGATGGACAAAGATCTAGATTTGTCCCCAG-TGACTCTCCCGGAAAATA 562
|| || ||| ||||||||||||||||| ||||||| |||| ||| |||||||| ||||
Sbjct 528 TGACCACTTTTTGATGGACAAAGATCTAAATTTGTCTCCAGTTGA-TCTCCCGGTTAATA 586
Query 563 GTTGGAGAAGGAAGTCACCTCCTGTAACAGGTGCTAAAGGATGTCAATCTCTTGCCaaaa 622
|||| |||||||||||| |||||||| ||||||| ||||||||||||||||| |||||||
Sbjct 587 GTTGCAGAAGGAAGTCATCTCCTGTATCAGGTGCAAAAGGATGTCAATCTCTGGCCAAAA 646
Query 623 aaaTCAAGACCAGAAGTCCAACCAGGAAAATGAGTGTCTTTGATTGGGGTAGTGATCAGT 682
||| | || ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 647 GAATTATGAGCAGAAGTCCAACCAGGAAAATGAGTGTCTTTGATTGGAGTAGTGATCAGT 706
Query 683 GTGATGTGAGTGACCCTAAAAACTCTCTAGTCACTCGTGCAAGCATTACATGCTCCAAGA 742
||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 707 GTGATGTGAGTGACCCTAAAACCTCTCCAGTCACTCGTGCAAGTATTACATGCTCCAAGA 766
Query 743 GAAGAGAGGATCATGTTGCAGGTGATGATCCAATGATTGATCTTGGAGTGAAGAAAGGAT 802
|||||| ||||| |||||| | | || |||| | | |||||||||||||| |||
Sbjct 767 TAAGAGAAGATCAGGTTGCA-G-G-TG-----ATGA-T--T-TTGGAGTGAAGAAACGAT 814
Query 803 CTATGGATCTGTGTGAGGA-TAGAAAAGTCTCAACTCATCACACACAAAGATTTATGCAG 861
||| ||||| |||||| | |||||||||||||| ||||| |||||||||| ||||| ||
Sbjct 815 CTAGGGATCCGTGTGA-TATTAGAAAAGTCTCAAGTCATCCCACACAAAGAGTTATGAAG 873
Query 862 AACAGTTCTGCAAAACATCAT-AAGATGGAACAAGCATCAGGTTTGAGTCAGGGCATTAT 920
|||||||||||||| |||| | ||||||||||||||||| ||||||||| ||||||||||
Sbjct 874 AACAGTTCTGCAAAGCATC-TCAAGATGGAACAAGCATCGGGTTTGAGTGAGGGCATTAT 932
Query 921 GTTTATCTCACAGAAGGATGCTCAGTTTCAGGATAAGGCATCAAAGGAGCACTTGGAACC 980
||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||
Sbjct 933 GTTTATCTCACAGAAGGATGCTCAGTTGGAGGATAAGGCGCCAAAGGAGCCCTTGGAACC 992
Query 981 CGAGGAAGACTTTATTGACATTGGTATTAACACTCAAATTGCTGCTGAAGCAATGAGTGC 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 CGAGGAAGACTTTATTGACATTGGTATTAACACTCAAATTGCTGCTGAAGCAATGAGTGC 1052
Query 1041 TTTAGTGTATGCTCCCTGCACTA-ACGAAGAAGCTTGTGAATCAGACCAAATTCCTGGGA 1099
|||||||||||||||||| |||| | |||||||||||||||||||||| |||||||||||
Sbjct 1053 TTTAGTGTATGCTCCCTGTACTACA-GAAGAAGCTTGTGAATCAGACCCAATTCCTGGGA 1111
Query 1100 AGT-TATCAGAAATGAGGGATCAAGTTAGTAATTTTTCTAGAAGGAACAAGGATACCATT 1158
|| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1112 -GTGTATCAGAAATGAGGGATCAAGTTAGTAATCTTTCTAGAAGGAACAATGATACCATT 1170
Query 1159 GAGGGTGGACCTGAAAGAGACAACTTGAGTAGTCTGCTTAGTGCT-C-C-ACACAAGGAA 1215
||||||| ||||||||||||||| |||| | ||||| |||||||| | | ||||| ||||
Sbjct 1171 GAGGGTGAACCTGAAAGAGACAAATTGAATGGTCTGTTTAGTGCTGCTCCACACAGGGAA 1230
Query 1216 ATAAACTCTAAGAAGAAGAGAAAATTCACCAAGGAAGAGA---CCGGAACAAACGTCTCT 1272
| |||||||||||||||||||||||||||||| ||||||| || || | |||||||||
Sbjct 1231 AGAAACTCTAAGAAGAAGAGAAAATTCACCAATGAAGAGAGAACCAGAGCTAACGTCTCT 1290
Query 1273 GTTACAACATGTCTTCTCAACTTATGTGAATGGAGGCATCCCAGGGCCAAAAGATCGCGT 1332
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1291 GTTAAAACATGTCTTCTCAACTTATGTGAATGGAGGCATCCCAGAGCCAAAAGATCACGT 1350
Query 1333 CTTATGCAAAGGCATCACGTCCCACCTAGAAGATCGTGGGGTGTTAGTTCAGTTAAAAAC 1392
||||||||||| ||||||||||||||||| ||||| ||||||| ||||| ||||||| ||
Sbjct 1351 CTTATGCAAAGACATCACGTCCCACCTAGGAGATCTTGGGGTGCTAGTTTAGTTAAAGAC 1410
Query 1393 AGAAGTGAAACCAACACTTTGTCAAGCAGGTTACGAGTATCATTAAGTGGGACAAGAGAA 1452
||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| ||
Sbjct 1411 AGAAGTGAAACCAACACTTTGTCAAGCAGCTTACGAGGATCGTTAAGTGGGACAAGACAA 1470
Query 1453 GCCTCTTCTTGCCAATCAGGAGTCATTGACTTGAATATTGCAAATCATGCATCTCCGAGG 1512
|||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| |||
Sbjct 1471 GCCTCTTCTTGCCAATCAGGAGTCATTGACTTGAATGTTGCATATCATGCTTCTCCAAGG 1530
Query 1513 AAAATATACGACGGAAGTCATGAAAGCCCTTGCAATAAAGATTTTCCCAGGTTATTCCTT 1572
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1531 AAAATATATGACGGAAGTCATGAAAGCCCTTGCAATAAAGATTTCCCCAGGTTATTCCTT 1590
Query 1573 CAGAAGGAGCTTACTACGAGGCTTGGAGAACCTGG-AATAGTAGGTGACTTCGTGTGGAA 1631
|||||||||||||||||||| ||||||| |||||| || | |||||||||||||||||||
Sbjct 1591 CAGAAGGAGCTTACTACGAGCCTTGGAGGACCTGGTAAAA-TAGGTGACTTCGTGTGGAA 1649
Query 1632 AGACCTAAGGAGACGAAGAAACTTGGCACATGTTCGAGTCTTGTTCAGCCATAATTTGGA 1691
|||| |||||| |||||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 1650 AGACTTAAGGAAACGAAGAAACTTGGCACATGTTCGAGTCTTATTCAGCCAGAATCTGGA 1709
Query 1692 TGATGAAACAACCAAGCAGCAGAAGAAGATAATGGTTCGACTGGGAATTTCTCCGGCATC 1751
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1710 TGATGAAACAGTCAAGCAGCAGAAGAAGATAATGGTTCGACTCGGAATTTCTCCGGCATC 1769
Query 1752 TTCCTCAGCAGATTCAACACATTTCATAGCCGATAGATTTGCTCGGACAAGGAATATGTT 1811
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1770 TTCATCAGCAGATTCAACACATTTCATAGCAGACAGATTTGCTCGGACAAGGAATATGTT 1829
Query 1812 GGAAGCCATAGCCCTTGGTAAATTTGTTGTTACGCCTCTATGGCTAGAGAGCTGTGCACA 1871
|||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1830 GGAAGCCATAGCTCTTGGTAAATTTGTTGTTACGCCTATATGGCTCGAGAGCTGTGCACA 1889
Query 1872 AACAAGATGCTTGATAGATGAGAAGAATTACATTTTGAGGGATAGCAAAAAGGAAAAAGA 1931
|||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 1890 AACAAGATGCTTGATAGATGAGAAGAGTTACATTTTAAGGGATATCAAAAAGGAAAAAGA 1949
Query 1932 CGGGTTCTGCATGCTTACATCTTTGGCCCGTGCGAAGCAGCATCCCCTTCTTAAGGGGTT 1991
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1950 CGGGTTCTGCTTGCTTACATCTTTGGCCCGTGCGAAGCAGCATCCCCTTCTTAAGGGGTT 2009
Query 1992 AAAAGTCTGCATCACTCCCAACATTAAACCAAGCAGAGGTATGATTACTGACCTAGTGAA 2051
|||||||||||||| |||| |||||||||||||||||||||||||||||| |||| ||
Sbjct 2010 TAAAGTCTGCATCACCCCCAGCATTAAACCAAGCAGAGGTATGATTACTGATTTAGTAAA 2069
Query 2052 GATGACTCAAGGGCAGGTAGTGGAGGTACGTGAGATAATTGCTGCAAAGGATAGAAACTT 2111
|||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 2070 GATGACTCAAGGGCAGGTAGTGGAGGCAAGTGAGATAATTGCTGCAGAGGATAGAAACTT 2129
Query 2112 TCCAGATGATCTGATGATTCTTTCTTGCGAAGAGGATCGGGATTTCTGTCTTCCTTTCAT 2171
|||||| ||| || |||||||||||||| |||| ||||| |||||||||||||||||| |
Sbjct 2130 TCCAGAAGATGTGTTGATTCTTTCTTGCAAAGAAGATCGAGATTTCTGTCTTCCTTTCGT 2189
Query 2172 TAATCAAGG 2180
|||||||||
Sbjct 2190 TAATCAAGG 2198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113603833335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5