BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490251
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein... 2499 0.0
> AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-defense
related 1 | chr4:1376306-1379420 REVERSE LENGTH=1777
Length=1777
Score = 2499 bits (1353), Expect = 0.0
Identities = 1655/1787 (93%), Gaps = 75/1787 (4%)
Strand=Plus/Plus
Query 1 AAATAAATAAATTTTTAGAAACC--aaaaaaaattatagagagag----aaaaaactcag 54
||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||
Sbjct 15 AAATAAATAAATTTTTAGAAACCAAAAAAAAAATTGTAGAGAGAGAAAAAAAAAACTCAG 74
Query 55 aggagagaaagagaagaCGACGAAGACGA-CA------AtttttttGTCAAGAGAGAAGA 107
||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 75 AGGAGAGAAAGAGAAGACGACGAAGACGACCATTTTTTTTTTTTTTGTCAAGAGAGAAGA 134
Query 108 CGGAGACAACAATGGCGGAAGCGAAGGAGGAGAATAGGGAGAAAAACGAAGAAGAAGAGA 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 CGGAGACAACAATGGCGGAAGCGAAGGAGGAGAATAGGGAGAAAAACGAAGAAGAAGAGA 194
Query 168 GCGTAAAGCTTTTCGTCGGACAAATTCCGAAACATATGTCGGAATCTCAACTCTTAACAT 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 GCGTAAAGCTTTTCGTCGGACAAATTCCGAAACATATGTCGGAATCTCAACTCTTAACAT 254
Query 228 TGTTTCAAGAGTTCGCTGTCGTAGACGAGGTCAATATCATCAAGGACAAGATTACACGCG 287
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 255 TGTTTCAAGAGTTCGCTGTCGTTGACGAGGTCAATATCATCAAGGACAAGATTACACGCG 314
Query 288 CCTCTCGAGGATGTTGTTTTCTGCTATGTCCATCGAGAGAAGAAGCTGATAAGTTGGTCA 347
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 315 CCTCTCGAGGATGTTGTTTTCTGCTATGTCCATCGAGAGAAGAAGCAGATAAGTTGGTCA 374
Query 348 ATGCTTGCCATAACAAGAAGACATTGGCTGGGGCGTC-CAGTCTATTGCAAGTAAAGTAT 406
|||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||
Sbjct 375 ATGCTTGCCATAACAAGAAGACATTGCCTGGGGC-TAACAGTCTATTGCAAGTAAAGTAT 433
Query 407 GCAGATGGCGAATTGGAAAGGCTAGAGCATAAGCTCTTTGTTGGTATGCTTCCAAAGAAT 466
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 434 GCAGATGGCGAATTAGAAAGGCTAGAGCATAAGCTATTTGTTGGTATGCTTCCAAAGAAT 493
Query 467 GTCTCTGAAGCTGAAGTTCAATCTTTATTCTCCAAGTATGGGACCATAAAAGATCTACAG 526
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 494 GTCTCTGAAGCTGAAGTTCAATCTTTATTCTCCAAGTACGGGACCATAAAGGATCTACAG 553
Query 527 ATTCTAAGAGGTGCTCAACAAACAAGCAAAGGCTGTGCTTTTCTTAAGTATGAGACAAAA 586
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 554 ATTCTAAGAGGTGCTCAACAAACGAGCAAAGGCTGTGCATTTCTGAAGTATGAGACAAAA 613
Query 587 GAACAAGCTGTTTCTGCCATGGAATCCATCAACGGAAAACATAAAATGGAGGGTTCGACT 646
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 614 GAACAAGCTGTTTCCGCCATGGAATCTATCAACGGAAAACATAAAATGGAGGGTTCAACT 673
Query 647 GTTCCTTTAGTTGTCAAATGGGCAGACACAGAACGAGAAAGACACACAAGAAGACTTCAA 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 GTTCCTTTAGTTGTCAAATGGGCAGACACAGAACGAGAAAGACACACAAGAAGACTTCAA 733
Query 707 AAGGCTCAATCTCACATCGCTCGATTATCTAACGCTGATCCAACAAATCCCTCATTGTTT 766
|||||||||||||||||||| ||| || |||| |||||||||||||||||||||||||
Sbjct 734 AAGGCTCAATCTCACATCGCCCGACTAGGGAACGGTGATCCAACAAATCCCTCATTGTTT 793
Query 767 GGAGCATTACCTATGGGTTATGTTCCACCATATAATGGATATGGTTATCATCAGCCTCCT 826
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 794 GGAGCATTACCTATGGGTTATGTACCACCATATAATGGATATGGTTATCATCAGCCTCCT 853
Query 827 GGAACTTATGGTTACATGCTACCACCAATTCAGAACCAAGCTGCATTTCCCAATATGATT 886
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 854 GGAACTTATGGTTACATGCTACCACCAATTCAGAACCAAGCTGCATTTTCCAATATGATT 913
Query 887 GCACAACCAAACCAAGGTAATAACAATGCATTGCAAGGAACGTCGCCTGACTCTGTGCCA 946
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 914 GCACAACCAAACCAAGGTAATAACAATGCATTGCAAGGAACATCGCCTGACTCTGTGCCG 973
Query 947 CCTCGTTTGGCCCGCAGAAACTTTCCTATGCCTCCTGCAAACTACATGGGATCTGGTTAT 1006
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 974 CCTCGTTTGGCCCGTAGAAACTTTCCTATGCCTCCTGGAAACTACATGGGATCTGGTTAT 1033
Query 1007 CCTGTTGTACGAGGTCATCCTTTTCCATTTGCTTATCCCAGAGGAATTGTGAGTCCTCGC 1066
|||| | | ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1034 CCTGCTATGCGAGGTCATCCTTTTCCATTTGCTTATCCCAGAGGAATTGTTAGTCCTCGC 1093
Query 1067 CCTGTAAGTAGCTCTCCTGGATCCATATCACCTGGCATTGCCAACAGTGGCATGTCAACA 1126
||| ||||||||||||||||||| ||| | | || || |||||||||||||
Sbjct 1094 CCTCTAAGTAGCTCTCCTGGATC--TAT-A--T--CA---CC-----TGGCATGTCAACA 1138
Query 1127 ACACCTTTAGGAATTGGTTTGAGTTCCGTGGTTCAAACCGAAGGTCCGGAGGGTGCAAAT 1186
| | |||||| |||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 1139 -C-C-TTTAGGCATTGGTTTGAGTTCTGTGGTTCAAACCGAAGGTCCAGAAGGTGCAAAT 1195
Query 1187 CTGTTTATCTATAACATACCTCGGGAATTTGGGGATCAAGAACTCGCGGCTGCATTTCAA 1246
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1196 CTGTTTATCTATAACATACCTCGGGAGTTCGGGGATCAAGAACTCGCGGCTGCATTTCAA 1255
Query 1247 TCTTTCGGTATTGTTCTGAGTGCCAAGGTTTTTGTAGACAAAGCTACTGGTGTAAGCAAA 1306
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1256 TCTTTCGGTATTGTTCTGAGTGCCAAGGTTTTTGTAGACAAAGCCACTGGTGTAAGCAAA 1315
Query 1307 TGTTTCGGTTTTGTTAGTTACGACTCACAAGCAGCCGCGCAGAACGCTATTGACGTGATG 1366
||||||||||||||||| || ||||||||||| || |||||||||||||||||| |||||
Sbjct 1316 TGTTTCGGTTTTGTTAGCTATGACTCACAAGCCGCGGCGCAGAACGCTATTGACATGATG 1375
Query 1367 AATGGTCGCCATTTAGGTGGTAAGAAATTGAAAGTCCAACTTAAGAGAGACAACAACAAT 1426
||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1376 AATGGTCGCCATTTAGGCGGTAAGAAATTGAAAGTCCAGCTTAAGAGAGACAGCAACAAT 1435
Query 1427 GGCCAAC--AG-------CCTTCCTTAATCTCCTAAAAG-GCTAAAACTCCTC-TCT-T- 1473
||||||| || |||||||||||||||| |||| ||||||||||||| ||| |
Sbjct 1436 GGCCAACCGAGTAGTAATCCTTCCTTAATCTCCTGAAAGTGCTAAAACTCCTCCTCTCTT 1495
Query 1474 CAACTTGAAAGTTCATAACAGaaaaaaaaaaaacaaaaaaCATATTCAGGCTAATGGGTC 1533
|||||||||||||||||||||||||||| |||||||||||||| |||| |||||||
Sbjct 1496 CAACTTGAAAGTTCATAACAGAAAAAAA-----CAAAAAACATATTCGGGCTTATGGGTC 1550
Query 1534 GACCCGGTTCAAAGATTTGGACCGATCTTGAATGGATACATCTGTATAAATCCAAATCTC 1593
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1551 GACCCGGTTCAAAGATTTGGACCGATCTTGAATGGATGCATCTGTATAGATCCAAATCTC 1610
Query 1594 ATTGTGGGTCAAAATGTCCCATCAACTCAA----t------t---t--t-t-tttt-ttt 1635
|||||||||||||||||||||||||||||| | | | | | |||| |||
Sbjct 1611 ATTGTGGGTCAAAATGTCCCATCAACTCAAAAGCTCCAAACTGGATCATCTCTTTTCTTT 1670
Query 1636 ttttC------CTGCAAATAACAATTTGTAATTTATGTGTATTATTGAAATTCATGTAGA 1689
|||| ||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1671 TTTTTTTTAATCTGCAAATAACAATTTGTAATTTATGTTTATTATTGAAACTCATGTAGA 1730
Query 1690 AATTTTATGATTTATTAACATTAAATTCATTGAATTTTTCTTCTATC 1736
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1731 AATTTTATGATTTATTAACATTAAATTCATTGAATTCTTCTTCTATC 1777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85842931950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5