BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490253
Length=1625
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03100.1 | Symbols: | Rho GTPase activating protein with PA... 2366 0.0
> AT4G03100.1 | Symbols: | Rho GTPase activating protein with
PAK-box/P21-Rho-binding domain | chr4:1374281-1376231 FORWARD
LENGTH=1691
Length=1691
Score = 2366 bits (1281), Expect = 0.0
Identities = 1517/1624 (93%), Gaps = 43/1624 (3%)
Strand=Plus/Plus
Query 1 CTTCCAaagagagagaagaagaagcac-aagtcc--agag--agagagagagaagCTGCG 55
|||||| |||||||||||||||||||| |||||| |||| ||||||||||||||||||
Sbjct 1 CTTCCATAGAGAGAGAAGAAGAAGCACAAAGTCCAGAGAGAAAGAGAGAGAGAAGCTGCG 60
Query 56 -AAA--TTTC-TTCATCT-AATGACGGGGCTTGTGATGATGACTAAAGGcggaggtt--- 107
||| |||| | ||| |||||||||||| |||||||||||||||||||||||||
Sbjct 61 AAAATCTTTCATAGTTCTCAATGACGGGGCTAGTGATGATGACTAAAGGCGGAGGTTGCG 120
Query 108 gcggcggaggaaaaggaggaaggagaaaatctacggcggaggaagaagaagaagaagagc 167
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 121 GCGGCGGAGGAAAAGGAGGAAGGAGAAAATCAACGGCGGAGGAGGAAGAAGAAGAAGAGC 180
Query 168 agaaTCAGCAACAACTGTCTCTTGTCGAGTTTCTCTTAACGGCGCTGCGTAAATCAGTAG 227
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 181 AGAATCAGCAACAACTGTCTCTTGTTGAGTTTCTCTTAACGGCGCTGCGTAAATCTGTGG 240
Query 228 TATCTTGCCGTGTAGACAACAGACAAGACGA---C------GGCGGAGGGATTTCGTCCG 278
| ||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 241 TTTCTTGCCGTGTAGACAACAGACAAGACGACGGCGGAGTAGGCGGAGGGATTTCGTCCG 300
Query 279 CCGTTCATCACATGGAGATCGGTTGGCCAACAAATGTTCGACACATCACTCATGTAACAT 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCGTTCATCACATGGAGATCGGTTGGCCAACAAATGTTCGACACATCACTCATGTAACAT 360
Query 339 TCGATCGATTCCATGGCTTTCTTGGTCTCCCTCACGAGCTTCAAGTCGAGATCCCATGTC 398
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 TCGATCGATTCCATGGCTTTCTTGGTCTCCCTCACGAGCTTCAAGTTGAGATCCCATGTC 420
Query 399 GAGTCCCTAGCGCAAGTGTGAGCGTGTTTGGTGTATCGGCGGAATCGATGCAATGTTCTT 458
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGTCCCTAGTGCAAGTGTGAGTGTGTTTGGTGTATCGGCGGAATCGATGCAATGTTCTT 480
Query 459 ATGACGAGAAAGGAAACAGTGTCCCAACTATTCTATTACTTATGCAGGAGAGACTATACT 518
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 481 ATGATGAGAAAGGAAACAGTGTCCCAACGATTCTATTACTTATGCAGGAGAGACTCTATT 540
Query 519 CTCAAGAAGGTCTCAAGGCTGAAGGAATTTTCAGGATAAACCCTGAGAATAGTCAAGAGG 578
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTCAACAAGGTCTTAAGGCTGAAGGAATTTTCAGGATAAACCCTGAGAATAGTCAAGAGG 600
Query 579 AACATGTAAGAGATCAACTAAACAGAGGTATTGTACCTGAGAATATTGATGTGCATTGTT 638
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AACATGTAAGAGACCAACTAAACAGAGGTATTGTACCTGAGAATATTGATGTGCATTGTT 660
Query 639 TGGCTGGTCTTATTAAAGCTTGGTTTAGAGAGTTACCTTGTGGAGTGCTTGACGGTCTTT 698
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 661 TGGCTGGTCTTATTAAAGCTTGGTTTAGAGAGTTACCAAGTGGAGTGCTTGATGGTCTTT 720
Query 699 CTCCTGAGGAAGTTCTCAATTGCAACACCGAGGATGAATCTGTTGAACTCATTAAGCAGT 758
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 721 CTCCTGAGGAAGTTCTCAATTGCAACACTGAGGATGAATCCGTTGAACTCATTAAGCAGT 780
Query 759 TGAAGCCAACTGAGTCTGCTTTGCTTAATTGGGCTGTTGATCTTATGGCTGATGTTGTTG 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGAAGCCAACTGAGTCTGCTTTGCTTAATTGGGCTGTTGATCTTATGGCTGATGTTGTTG 840
Query 819 AAGAAGAAGAGTCTAACAAAATGAATGCAAGGAATATAGCCATGGTTTTTGCTCCTAATA 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AAGAAGAAGAGTCTAACAAAATGAATGCAAGGAATATAGCCATGGTTTTTGCTCCTAATA 900
Query 879 TGACTCAGATGACAGATCCATTAACGGCTCTTATGCATGCTGTTCAAGTGATGAACTTGC 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TGACTCAGATGACAGATCCATTAACGGCTCTTATGCATGCTGTTCAAGTGATGAACTTGC 960
Query 939 TTAAGACTCTCATCACAAAAACACTGGCTGAACGCGAAGAAACTGCTACCGGATCAGAAG 998
|||||||||| |||||||| ||||| |||||||| ||||||| |||||||||||||||||
Sbjct 961 TTAAGACTCTTATCACAAAGACACTAGCTGAACGGGAAGAAAATGCTACCGGATCAGAAG 1020
Query 999 GATATTCTCCATCCCACTCATCCAATTCCCAAACTGATTCTGATTCTGACAATGCACAAG 1058
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1021 GATATTCTCCATCCCACTCATCCAATTCTCAAACTGATTCTGATTCTGACAATGCACAAG 1080
Query 1059 ACATGGAAGTCAGCGGTGAATCACATGGCACAGATTCGGAATGCGGAGAAGAAGAAGAAG 1118
|||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1081 ACATGGAAGTCAGCTGTGAATCACAAGCCACAGATTCGGAATGCGGAGAAGAAGAAGAAG 1140
Query 1119 -AG-G----TAGAACAGCAACAAGAACATCTCAGCCGCCACTCTACCCACGAAGATGAAC 1172
|| | |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TAGAGGAAGTAGAACAGCATCAAGAACATCTCAGCCGCCACTCTACCCACGAAGATGAA- 1199
Query 1173 AC-GATATTGGATCATTAAGCTCAATAGAGAAATGCTTCTTGAGTCAGCTCAACAACAA- 1230
|| ||||||||||||||| | |||||||||||||||||||||| ||| |||||||||||
Sbjct 1200 ACCGATATTGGATCATTATGTTCAATAGAGAAATGCTTCTTGAATCAACTCAACAACAAT 1259
Query 1231 -C-GCTAGAGTTTCAAACACCAGTACCACTGAAGACTGGAGCCCTAAAGCATCACCGCTA 1288
| |||||||||||||||||||||| | ||||||||||||| |||||||||| |||||
Sbjct 1260 GCTGCTAGAGTTTCAAACACCAGTATCTCTGAAGACTGGAGTCCTAAAGCATTTCCGCTT 1319
Query 1289 GTATCATTCACAGAGAACAAAAACATCATTTTGAGCTCAAGCACAAGCGACTAAGATGAA 1348
|||||||||||||| ||||||| || || ||||||||||||||| ||||||||||||
Sbjct 1320 GTATCATTCACAGAAAACAAAAGCAACACTTTGAGCTCAAGCACTAGCGACTAAGATT-- 1377
Query 1349 GAAGCAAGCCTGATCTGCATTTCCCACGCTTTCACCGGTGACAAACTCATTTTTATGTAG 1408
|||||||| ||||||||||||||||||||||| ||||||| ||||||| |||||||
Sbjct 1378 ----CAAGCCTGGTCTGCATTTCCCACGCTTTCACCAGTGACAACCTCATTTCTATGTAG 1433
Query 1409 TTTCTGTTCAATCTGCTGCAGAGAACAAACAAGAAGGAAGAAAA-CTGGTT-GTGTCTGT 1466
||||||||||||||||||||||||| ||||||||||| |||||| | | || ||||||||
Sbjct 1434 TTTCTGTTCAATCTGCTGCAGAGAAGAAACAAGAAGGCAGAAAAACAGCTTTGTGTCTGT 1493
Query 1467 AAATCAATACAGAGATTATTGTCCAATTTGTTAGGGTCTTTAGGGATTGTTGGTGAGAGG 1526
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1494 AAATCAATACAGAAATTATTGTCCAATTCGTTAGGGTCTTTAGGGATTGTTGGTGAGAAG 1553
Query 1527 TCTGATTTTAGGGTTCAACAAGGGCTGAACctgtctgtgttgactgttgttgttgt-gtc 1585
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1554 TCTGATTTTAGGGTTCAACAAGGGCTGAACCTGTCTGTGTTGACTGTTCTTGTTGTTGT- 1612
Query 1586 tgtc 1589
||||
Sbjct 1613 TGTC 1616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80270671455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5