BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490257
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03060.1 | Symbols: AOP2 | AOP2 (ALKENYL HYDROXALKYL PRODUCI... 1755 0.0
AT4G03050.2 | Symbols: AOP3 | 2-oxoglutarate (2OG) and Fe(II)-d... 351 8e-96
AT4G03038.1 | Symbols: | other RNA | chr4:1340115-1341289 REVE... 244 1e-63
AT4G03039.1 | Symbols: MIR826A | MIR826a; miRNA | chr4:1340479-... 117 3e-25
> AT4G03060.1 | Symbols: AOP2 | AOP2 (ALKENYL HYDROXALKYL PRODUCING
2); oxidoreductase, acting on paired donors, with incorporation
or reduction of molecular oxygen, 2-oxoglutarate as
one donor, and incorporation of one atom each of oxygen into
both donors | chr4:1351980-1353854 REVERSE LENGTH=1267
Length=1267
Score = 1755 bits (950), Expect = 0.0
Identities = 1188/1294 (92%), Gaps = 52/1294 (4%)
Strand=Plus/Plus
Query 15 ATGGGTTCATGCAGTCCTCAGCTTCCACTCATCAATCTTGCGGACAAAACCCTAGAACCA 74
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTCATGCAGTCTTCAGCTTCCACTCATCAATCTTGCGGACAAAACCCTAGAACCA 60
Query 75 GGAAGCTCAAAGTGGGCTGAAGTGAGGAGTGATGTCCGTAAAGCTCTCGAAGACTTCGGT 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGAAGCTCAAAGTGGGCTGAAGTGAGGAGTGATGTCCGTAAAGCTCTCGAAGACTTCGGT 120
Query 135 TGTTTCGAAGCTTCATATGATAAAGTGTCATTGGAGCTTCAGGAATCGATTGTGAAAACC 194
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 121 TGTTTCGAAGCTTCATATGATAAAGTGTCATTGGAGCTTCAGGAATCAATTATGAAAACC 180
Query 195 ATGGAAGAGCTTTTCGGATTGCCAGTTGAGACCaaaaaaaGAAACGTGTGCCCCAAACCT 254
|||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||
Sbjct 181 ATGGAAGAGCTTTTCGCATTGCCAGTTGAGACCAAACAACGAAACGTGTGCCCCAAACCT 240
Query 255 TACGTTGGATATTTGAATCATAATAATCTCTCCGAGAGTTTGGGGATCAGTAATGCTAAT 314
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 TACGTTGGATATTTGAATCATAATAATCTCTCCGAGAGTTTGGGGATAAGTAATGCTAAT 300
Query 315 ATTTTGGAGAACATCAACGAATTTTCTCAACAGCTATGGCCTGATGGTGACGGTAACGAG 374
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 301 ATTTTGGAGAACATCAACGAATTTACTCAACAACTATGGCCTCATGGTGACGGTAACGAG 360
Query 375 AATATCAGTAAAACGATCCAGTTGTTTGCAGAGAAGTTAGGGGAAATAGATGTGATGGTG 434
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 361 AATATCAGTAAAACGATCCAGTTGTTTGCGGAGAAGTTAGTGGAAATAGATGTGATGGTG 420
Query 435 AGAAGAATGGTAATGGAGAGCTTTGGAATAGAAAAATACATTGATGAACATCTAAATTCT 494
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 421 AGAAGAATGGTAATGGAGAGCTTTGGAATAGAAAAATACATTGATGACCATCTAAAGTCT 480
Query 495 ACGGAATACCGTATGCGACTGATGAAGTATATTGCACCACCTGATGGTGATGCTAATACT 554
|||| | |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 ACGG----C-GTATGCGACTGATGAAGTATATTGCACCACCTGAGGGTGATGCTAATACT 535
Query 555 ACTGTTAACGATAATGCTGATCTTCTTGCTAAGCTTAACATTGATGGTGATGATGGTGTT 614
|||||| ||||||||||||||||||||||||||||||| | || || | |||||||
Sbjct 536 ACTGTTGACGATAATGCTGATCTTCTTGCTAAGCTTAA--T--AT--TG-T--TGGTGTT 586
Query 615 GGTCCTAATGTTGGTGTTAAAGTTAATGCCGATATTAGTGATGATGTTAATGCTAATGCT 674
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 GAACCTAATGTTGGTGTTAAAGTTAATGCCGATATTAGTGATGATGTTAATGCTAATGCT 646
Query 675 AGTGTT---G--G-TG------CTAATGTTAATGATGAT-C---T-T-AATG-T--TG-- 711
|||||| | | || |||||||||| | |||| | | | |||| | |
Sbjct 647 AGTGTTAATGCTGGTGTTGGTGCTAATGTTAACGCTGATACCGGTGTTAATGATAATCTT 706
Query 712 A-TGCTGAAGCTAATGTTGCCATCGGTGGTGGTGTTAACGCTAATACTGATCTTGGTGTT 770
| || ||| |||||||||||| |||||||||| ||||| |||||||||||||||||||||
Sbjct 707 AATGTTGATGCTAATGTTGCCGTCGGTGGTGGCGTTAATGCTAATACTGATCTTGGTGTT 766
Query 771 GGTGTTAATGTTAATTCTAATGTTGATGTTAATGCTATAACTGGTGCTACTGGTGGGGAT 830
||||||||||| ||||||||||||| ||| ||||||| |||||||| | || ||
Sbjct 767 GGTGTTAATGTCAATTCTAATGTTGCTGTGAATGCTAAAACTGGTG-----G-TG---AT 817
Query 831 GGTGTTGAGGCTAATGATGATAATGAGGAGAAGAAGTTGGGTTTACCTTCTCATACTGAT 890
| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 818 GATGTTGAGGCTAATGATGATAATGAGGAAAAGAAGTTGGGTTTACCTTGTCATACTGAT 877
Query 891 AAAAACCTTTTCACAGTACTTTTTCAACATGAAATTGAAGGTTTGGAGGTACTGACCGAA 950
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 878 AAAAACCTTTTCACAGTACTTTTTCAACATGAAATTGAAGGTTTGGAGGTAAAGACCAAA 937
Query 951 GATGACAAGTGGATCAGAGTGAAACCATCCCCGAATACTTTCACTGTTATTGCCGGAGAT 1010
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 938 GATGAGAAGTGGATCAGAGTGAAACCATCCCCGAATACTTTCATTGTTATTGCCGGAGAT 997
Query 1011 TCTCTATGTGTAAGTCTTATGAACGGTAGAATTC-GTGCTCCGTATCACCGAGTAAGAGT 1069
|| ||||||| ||||||||| |||||||| | | |||||||||||||||||||||||
Sbjct 998 TCCCTATGTGC---TCTTATGAATGGTAGAAT-CAGGGCTCCGTATCACCGAGTAAGAGT 1053
Query 1070 AACGGAGAAAAAGAAGACAAGATACACAGCAGCAATTTTCACGTGTCCAAAACCAGATTA 1129
|| |||||||||| ||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1054 GACCGAGAAAAAGAGGACAAGATACACAGCAGCAATTTTCACGTGTCCAAAACCGGACTA 1113
Query 1130 TATCATAGAGGCACCAATAGAACTTGTGGACGAGAAGCATCCACGTCTCTTCAGACCCTT 1189
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1114 TGTCATAGAGGCACCAAAAGAACTTGTGGACGAGAAGCATCCACGTCTCTTCAGACCTTT 1173
Query 1190 TGATTACCGCGACTTGTTTACCTTCTATCACTCAGAAGCTGGTCGTAAAGTTCAATCTAC 1249
||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||| |||
Sbjct 1174 TGATTACCGCGACTTGTTTACATTCTATCACTCAGAAGCTGGTCGCAAAATTCAATATAC 1233
Query 1250 TCTTCAAGCTTATTGTGCCGTCTCCGAAGCATAA 1283
||||||||||||||||||||||||||||||||||
Sbjct 1234 TCTTCAAGCTTATTGTGCCGTCTCCGAAGCATAA 1267
> AT4G03050.2 | Symbols: AOP3 | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr4:1344212-1346411
FORWARD LENGTH=1490
Length=1490
Score = 351 bits (190), Expect = 8e-96
Identities = 360/441 (82%), Gaps = 16/441 (4%)
Strand=Plus/Plus
Query 865 AGTTGGGTTTACCTTCTCATACTGATAAAAACCTTTTC-ACAGTACTTTTTCAACATGAA 923
||||||| |||||| |||||||||||||| || || | | || ||| ||| ||| ||
Sbjct 788 AGTTGGGCTTACCTAGTCATACTGATAAAAGCC-TTACTGGAATAATTTATCAGCATCAA 846
Query 924 ATTGAAGGTTTGGAGGT-ACTGACCGAAGATGACAAGTGGATCAGAGTGAAACCATCCCC 982
||||| ||||||||||| | |||| |||| | |||||||||||||| |||||| | ||
Sbjct 847 ATTGATGGTTTGGAGGTGA-AGACCAAAGAGGGGAAGTGGATCAGAGTTAAACCAGCTCC 905
Query 983 GAATACTTTCACTGTTATTGCCGGAGATTCTCTATGTGTAAGTCTTATGAACGGTAGAAT 1042
||||| ||| ||||||||| |||||| ||||||||| | |||||||| ||||||||
Sbjct 906 TAATACCGTCATTGTTATTGCGGGAGATGCTCTATGTG-CA--CTTATGAATGGTAGAAT 962
Query 1043 TCGTGCTCCGTATCACCGAGTAAGAGTAACGGAGAAAAAGAAGACAAGATACACAGCAGC 1102
| | | ||||||||||||||||| ||||| |||||||||||||| |||||| |||||||
Sbjct 963 CCCTTCACCGTATCACCGAGTAAGGGTAACAGAGAAAAAGAAGACGAGATACGCAGCAGC 1022
Query 1103 AATT-TTCACGTGTCCAAAACCAGATTATATCATAGAGGCACCAATAGAACTTGTGGACG 1161
||| || || ||||||| || |||||||||||| |||||| ||||||||||||||
Sbjct 1023 -ATTGTTTTCGAATCCAAAAGAAGGTTATATCATAGATTCACCAAAAGAACTTGTGGACG 1081
Query 1162 AGAAGCATCCACGT-CTCTTCAGACCCTTTGATTACCG-CGAC-TTGTTTACCTTCTATC 1218
|||||||||||||| | ||||| ||||||||||| | |||| || |||| ||||||||
Sbjct 1082 AGAAGCATCCACGTGC-CTTCAAACCCTTTGATTTT-GTCGACCTT-TTTAACTTCTATC 1138
Query 1219 ACTCAGAAGCTGGTCGTAAAGTTCAATCTACTCTTCAAGCTTATTGTGCCGTCTCCGAAG 1278
|| ||||||||||||||| || || ||||||||| ||||||| ||||| |||||| | |
Sbjct 1139 ACACAGAAGCTGGTCGTAGAGCTCCATCTACTCTCCAAGCTTTTTGTGGCGTCTCTGCTG 1198
Query 1279 CATAAATTAATGTGTGCGCTT 1299
|||| || ||||||||||
Sbjct 1199 GG-AAATAAAGGTGTGCGCTT 1218
> AT4G03038.1 | Symbols: | other RNA | chr4:1340115-1341289 REVERSE
LENGTH=722
Length=722
Score = 244 bits (132), Expect = 1e-63
Identities = 152/161 (94%), Gaps = 4/161 (2%)
Strand=Plus/Plus
Query 1104 ATTTTCACGTGTCCAAAACCAGATTATATCATAGAGGCACCAATAGAACTTGTGGACGAG 1163
|||||||||| ||||||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 284 ATTTTCACGTATCCAAAACCGGACTATATCATAGAGGCACCAA-AGAACTTGTGGACGAG 342
Query 1164 AAGCATCCACGTCTCTTC--A-GACCCTTTGATTACCGCGACTTGTTTACCTTCTATCAC 1220
|||||||||||||||||| | ||||| | ||||||||||||||||||||||||||||||
Sbjct 343 AAGCATCCACGTCTCTTCAGACGACCCGTAGATTACCGCGACTTGTTTACCTTCTATCAC 402
Query 1221 TCAGAAGCTGGTCGTAAAGTTCAATCTACTCTTCAAGCTTA 1261
|||||||||||||||||||||||||||||||||||||||||
Sbjct 403 TCAGAAGCTGGTCGTAAAGTTCAATCTACTCTTCAAGCTTA 443
Score = 58.4 bits (31), Expect = 2e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Minus
Query 1103 AATTTTCACGTGTCCAAAACCAGATTATATCATA 1136
|||||||||||||||||||||||||||| |||||
Sbjct 256 AATTTTCACGTGTCCAAAACCAGATTATCTCATA 223
> AT4G03039.1 | Symbols: MIR826A | MIR826a; miRNA | chr4:1340479-1340656
FORWARD LENGTH=178
Length=178
Score = 117 bits (63), Expect = 3e-25
Identities = 72/76 (95%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 1104 ATTTTCACGTGTCCAAAACCAGATTATATCATAGAGGCACCAATAGAACTTGTGGACGAG 1163
|||||||||| ||||||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 75 ATTTTCACGTATCCAAAACCGGACTATATCATAGAGGCACCAA-AGAACTTGTGGACGAG 17
Query 1164 AAGCATCCACGTCTCT 1179
||||||||||||||||
Sbjct 16 AAGCATCCACGTCTCT 1
Score = 58.4 bits (31), Expect = 2e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1103 AATTTTCACGTGTCCAAAACCAGATTATATCATA 1136
|||||||||||||||||||||||||||| |||||
Sbjct 103 AATTTTCACGTGTCCAAAACCAGATTATCTCATA 136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76656232215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5