BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490258
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03030.1 | Symbols: | Galactose oxidase/kelch repeat superf... 2292 0.0
> AT4G03030.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:1335729-1337368 REVERSE LENGTH=1640
Length=1640
Score = 2292 bits (1241), Expect = 0.0
Identities = 1463/1566 (93%), Gaps = 32/1566 (2%)
Strand=Plus/Plus
Query 1 ATCTTCGCAATGATGATTCCGTTTCATTGATCGATCAATCTCACTGACAAATCTCGCCGG 60
|||||| | |||| |||||||||||||||||||||||| | | | ||||||||||||
Sbjct 22 ATCTTCTCCATGACGATTCCGTTTCATTGATCGATCAA--T--C--A-AAATCTCGCCGG 74
Query 61 AGTTTCTTCCCGCCGGCATAAACCATGCCTTTGCCTATATTCTCGTCGCGGTTACAGTGT 120
||||||||||||||||| | || ||||||| ||||||||||| |||||||||||||||||
Sbjct 75 AGTTTCTTCCCGCCGGCCTGAATCATGCCTCTGCCTATATTCCCGTCGCGGTTACAGTGT 134
Query 121 TCATCTTCATCGTCATC--C-TCGTCGCGATCGTCGTTTCTTCGTCCTAAGCCTCGAATC 177
|| ||||||||||| || | ||||||||||| |||||| || | ||||||| |||||||
Sbjct 135 TCGTCTTCATCGTCTTCGTCGTCGTCGCGATCTTCGTTTTTTAGGCCTAAGCTTCGAATC 194
Query 178 GATCCAAGCTTGACCTTAATTCCAGGCTTATCCAACGACGTCGCGAGACTGATTCTCTCC 237
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 195 GATCCAAGCTTGACCTTAATTCCAGGCTTATCCAACGACGTCGGGAGACTGATTCTCTCC 254
Query 238 TTCGTCCCTTACCCTCACATCTCTCGTCTCAAATCGACCTGTAAATCATGGTACGCTTTT 297
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 255 TTCGTCCCTTACCCTCACATCTCTCGTATCAAATCAACCTGTAAATCATGGTACGCTTTC 314
Query 298 CTCTCTTCCAAAACCCTAATTTCACTCCGCCATAGCCGAGACAACAGCAACATCAACAAT 357
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 315 CTCTCTTCCAAAACCCTAATTTCACTCCGCCATAGCAGAGACAACAGCAACACCAACAAT 374
Query 358 CTCTCGCATCTCCTTTGTATCTTCCCTCAGGATCCTTCGATTTCGCCTCCGTTTCTCTTC 417
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 375 CTCTCGCATCTCCTTTGTATCTTCCCTCAGGATCCTTCGATTTCGCCTCCTTTTCTCTTC 434
Query 418 GATCCCGTGACTCTCTCTTGGAGATCGCTTCCTCTTATGCCTTGTAACCCTCACGTTTAC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 GATCCCGTGACTCTCTCTTGGAGATCGCTTCCTCTTATGCCTTGTAACCCTCACGTTTAC 494
Query 478 GGTCTCTGCAATTTCGTAGCCGTAGCTCTTGGTCCTTACGTTTATGTCCTCGGTGGCTCT 537
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 495 GGTCTCTGCAATTTCGTAGCTGTAGCTCTTGGTCCTTACGTTTATGTCCTCGGTGGCTCT 554
Query 538 GCTTTTGATACTAGGTCTTATCCTCTGGATGTTCCTTTGCCTACTTCTTCTGTGTTCCGT 597
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 555 GCTTTTGATACTAGGTCTTATCCTCTTGATGTTCCTTTGCCTACTTCTTCTGTGTTTCGT 614
Query 598 TACAGTTTCCTGAAATCGGTTTGGGAACGGCTCTCTCCGATGGTGTCTCCGCGTGGTAGC 657
||||| ||| |||||||||||||||||||| | ||||||||| |||||||||||||||||
Sbjct 615 TACAGCTTCGTGAAATCGGTTTGGGAACGGTTATCTCCGATGATGTCTCCGCGTGGTAGC 674
Query 658 TTCGCGTGCGCTGCGATGCCTGGTTCGTCTGATCGGATTATTGTGGCGGGAGGAGGATCA 717
|| || |||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 675 TTTGCTTGCGCTGCGATGCCTGGTTCTTGTGGTCGGATTATTGTGGCGGGAGGAGGATCA 734
Query 718 CGGCACACTTTGTTTGGTGCTGCTGGAAGTAGAATGAGTTCTGTGGAGATTTATGATGTT 777
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 735 CGGCACACTCTGTTTGGTGCTGCTGGAAGTAGAATGAGTTCTGTGGAGATGTATGATGTT 794
Query 778 GAGAAAGATGAGTGGAGGGAAATGGTTGAACTGCCTAGGTTTAGAGCAGGATGTCTTGGT 837
||||||||||||||||| | |||| |||| ||||||||||||||||||||||| |||||
Sbjct 795 GAGAAAGATGAGTGGAGAGTAATGAATGAATTGCCTAGGTTTAGAGCAGGATGTGTTGGT 854
Query 838 TTCTTGGTTG-GTAATGAGAAGGAGAAGGAG--G-A--AG-AT---AGAGAGTTTTGGGT 887
|||||||| | | |||||||||||||||||| | | || | ||||||||||||||
Sbjct 855 TTCTTGGTGGAG-AATGAGAAGGAGAAGGAGAAGGAGGAGGAAGGGAGAGAGTTTTGGGT 913
Query 888 AATGGGTGGCTATGGCGGATCGAGGACGGTTTCAGGGATTCTTCCTGTTGATGAGTACTA 947
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 914 TATGGGTGGCTATGGCGGATCGAGGACGGTTTCGGGGATTCTTCCTGTTGATGAGTACTA 973
Query 948 TAAAGACGCCGCAGTGATGGATTTGAGAGTAGATGGTGGTGAGAAATGGAGGATAGTTGG 1007
||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 974 TAAAGACGCGGTAGTGATGGATTTGAGAGTAGATGGTGGTGAGAAATGGAGGGTAGTTGG 1033
Query 1008 AGATATGTGGGGAGAAGAAGTGCGACCTAAGCTAGGGAAGATTGTTGCTGTTGATTGTGG 1067
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1034 AGATATGTGGGGAGAAGAAGAGAGACCTAAGCTAGGGAAGATTGTTGCTGTTGATTGTGG 1093
Query 1068 AAAGCCGGTGTTTTTCATGTTAGATAAGGATTGGATTCTTAGGTATGAGAAGGGTTTGAA 1127
||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1094 GAAGCCTGTGTTTTTCATGTTGGATAAGGATTGGATTCTTAGGTATGAGATGGGTTTGAA 1153
Query 1128 TCGTTGGAGAAAGGAGTCAAGCGTGCCGAAGAAAGCTCATTACGACAAACCGGTTGGTTT 1187
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1154 TCGTTGGAGAAAGGAGTCAAGCGTGCCTAAGAAAGCTCATTACGACAAACCGGTTGGTTT 1213
Query 1188 TGTTGCACTGAATGGTGAATTACATGTTATGATTCTTTTGGATGGTTATAATCTGATGGA 1247
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 CGTTGCACTGAATGGGGAATTACATGTTATGATTCTTTTGGATGGTTATAATCTGATGGA 1273
Query 1248 CACAAGGCATACTAGACAACAGAGGAAAGCTGGATCTTTGATGATTCATATGTATGATCC 1307
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 TACAAGGCATACTAGACAACAGAGGAAAGCTGGATCTTTGATGATTCATATGTATGATCC 1333
Query 1308 AAAGAAGAAAACTTGGAGATCGGTTGTCTCAAAGCCGCCGTTTAATCACCAACTTGATTT 1367
||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 1334 AAAGAAGAAGACTTGGAGATCGGTTGTCTCAAAGCCACCGTTCAATCATCAACTTGATTT 1393
Query 1368 CAGGACCACGGTTATGTGCACCATCCGATTGTAG--G-TGTaaaaaaaaCTCTCATCACA 1424
|||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||
Sbjct 1394 CAGGACCACGGTTATGTGCACCATCCGATTGTAGTAGGTGTAAAAAA--CTCTCATCACA 1451
Query 1425 --TCATCTAGAATAAAATTTGGTGTTCATGGTGTGTGAGATCTGCTGATGTTTTAGGTAT 1482
|||||||||||||||||||||||||||| |||||||| |||| |||||||| ||||||
Sbjct 1452 CATCATCTAGAATAAAATTTGGTGTTCATGTTGTGTGAGCTCTGATGATGTTT-AGGTAT 1510
Query 1483 TGGTTCGTTTCGTT-TACCACATACATATGATTACCACATTGTCTGTACAGGATGAAAAA 1541
||||||||||| || |||||| |||||||| |||||||| |||||||||| | |||||||
Sbjct 1511 TGGTTCGTTTC-TTATACCACTTACATATG-TTACCACACTGTCTGTACAAGTTGAAAAA 1568
Query 1542 CAAAAA 1547
||||||
Sbjct 1569 CAAAAA 1574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76355028945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5