BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490262
Length=2762
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03000.1 | Symbols: | RING/U-box superfamily protein | chr4... 4178 0.0
AT1G03365.1 | Symbols: | RING/U-box superfamily protein | chr1... 732 0.0
> AT4G03000.1 | Symbols: | RING/U-box superfamily protein | chr4:1324108-1327520
FORWARD LENGTH=2816
Length=2816
Score = 4178 bits (2262), Expect = 0.0
Identities = 2627/2798 (94%), Gaps = 46/2798 (2%)
Strand=Plus/Plus
Query 1 CTTCATCTTCTAGCCACGCACTTGTTCTCTTTATCACAGTG--C-C-C-CTCTCTG---T 52
|||| |||| ||||||||||||||||||||||||||||||| | | | |||||||
Sbjct 25 CTTCGTCTTGTAGCCACGCACTTGTTCTCTTTATCACAGTGCCCTCTCGCTCTCTGCAAC 84
Query 53 AACACTCTTTATTTAT-TA-ATATATATTCATCGATCCctctctctctctctTCG-ATTC 109
||||||||| || ||| || ||||||||||||| || | | || |||||| ||| ||||
Sbjct 85 AACACTCTTAATATATATATATATATATTCATCAAT--C-C-CTATCTCTCATCGAATTC 140
Query 110 TCTTCCGATCGTC---TTTT-TTCCCGCGGTTTCTTGCGTTCCCGGGAATTGTTGCTTAA 165
||||||||||||| |||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct 141 TCTTCCGATCGTCTTTTTTTCTTCCCGCGGTTTCTTGCGTTTCCGGGAATTATTGCTTAA 200
Query 166 TGGTCCAGAAGCAAGAAGAAATGAATGAGTGTGGTGCTGTAAATGGTGGCAAAGTGGGAA 225
|||| |||||||||||||||||||||||| ||||||||| |||||||| |||||||| |
Sbjct 201 TGGTTGAGAAGCAAGAAGAAATGAATGAGTTTGGTGCTGTCAATGGTGGGAAAGTGGGGA 260
Query 226 CG------TC--T-TCACCACCGCAAGAGAAAGGAAGGAAGAACAAGAGAAAGTTAGCTG 276
|| || | |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 261 CGTCTTCTTCAGTGTCACCACCGCAAGATAAAGGAAGGAAGAACAAGAGAAAGTTAGCTG 320
Query 277 ATCCTTCTCCACAAAATGCTGCTTCTTTGACTGAATTCCCTCGATATGAGTTACATTCAC 336
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 321 ATCCTTCTCCACAAAATGCTGCTTCTTTGACTGAGTTCCCTCGATATGAGTTACATTCGT 380
Query 337 TCAAATCTCAAAGCACTTTGTGTGAAAATGACTCGAACGGGCAGCTGAAAGCGGAAGAGT 396
|||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 381 TCAAATCTCAAAGCCCTTTGTGTGAAAATGACTCCAACGGGCAGCTGAAAGCCGAAGAGT 440
Query 397 CTGACTCCGTAGGATGGGATGATCCCTTTGCTTGTCAACTCGAACAACTTTTATCATCAA 456
|||| || || |||||||||||||| ||||||||||| || ||| ||| ||||| ||||
Sbjct 441 CTGATTCTGTGGGATGGGATGATCCGTTTGCTTGTCACCTTGAAGGACTATTATCGTCAA 500
Query 457 ATTTGCTCACCCTCTTCCGTAGTGCAATGAATCAGATTATGGATTGTGGGTTTAGTGAGG 516
|||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 501 ATTTGCTCACGCTCTTTCGTAGTGCAATGAATCAGATTATGGATTGTGGGTATAGTGAGG 560
Query 517 ATGTTGTTCTCAAAGCTATTTCAAGCAGTAGGCTCTACTCTGGGGGAAATGATCTCGTCT 576
|||||||||||||||||||||||||||||||| |||||| ||| |||| ||||||||| |
Sbjct 561 ATGTTGTTCTCAAAGCTATTTCAAGCAGTAGGTTCTACTGTGGTGGAACTGATCTCGTGT 620
Query 577 CTAACATTGTTAATGATACCTTGAGTTTTTTGAAGAGTGG-AAAAAATGTTGCTGGTTCG 635
|||| |||||||| |||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 621 CTAATATTGTTAACGATACCTTGAGTTTTTTGAAGAGTGGCAAAAAA-GTTGCTGGTTCC 679
Query 636 AGAGACTATGTGTTTGAGGATTTGCAACAGCTTGTTGCCTATACTTTGGTAGAGAAGATA 695
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 680 AGAGACTATGTGTTTGAGGATTTGCAACAGCTTGTTGCGTATAGTTTGGTAGAGAAGATA 739
Query 696 AGTCTTGTTAGGGAGGTTAGACCATCGCTTTCAACAGTCGAAGCTATGTGGAGGCTGTTG 755
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 740 AGTCTTGTTAGGGAGGTTAGACCATCGCTTTCAACGGACGAAGCTATGTGGAGGCTGTTG 799
Query 756 ATGTGTGACTTGAATGTTTTGCAAGCTTTTGAAGTGGAAGGAGATGGATTGGAGGGCTCT 815
|| |||||||||||||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 800 ATTTGTGACTTGAATGTTTTGAAAGCTTTTGAAGTGGACGCAGATGGATTGGAGGGCTCT 859
Query 816 TCGGGTTCCAATGCAAGTAAATCATCGGAATCTCCAGTTTCTGAGTGTAATCCTTCAAAA 875
|||| ||||||||| |||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 860 TCGGTTTCCAATGCTAGTAAATCATCGGAATCTCCAGTTGCTGAGTGTAATCCTCCAAAA 919
Query 876 TCTAGTGGCTCGGATAACCCAAAGGCGCCCA-TATCCAATACTCAAAGCAATCAGAGTGA 934
|| |||| | | |||||||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 920 TCCAGTGACGCAGATAACCCAAAGGC-TCCAGTATCCAATACTCAAAGCAAGCAGAGTGA 978
Query 935 GCCAGTCAAATTTGGGAACTTCCCAAATGTGAACAACTCCAAAAATCCTCATGCTAGTGG 994
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 979 GCCAGTCAAATTTGGGAACTTCGCAAATGTAAACAACTCCAAAAATCCTCATGCTAGTGG 1038
Query 995 AGCAACCCCTGGAAAAGAGGTATTTTCTGTTTCCACTGCTTCTGGTGAAGGCACTAAAAG 1054
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 AGCAACACCTGGAAAAGAGGTATTTTCTGTTTCCACTGCTTCTGGTGAAGGCACTAAAAG 1098
Query 1055 TGCATCCCTGACTTCTGTTTCTGATGAAAAATTAGTATCTTGTCGAAAAGGCCGCACCAA 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 TGCATCCCTGACTTCTGTTTCTGATGAAAAATTAGTATCTTGTCGAAAAGGCCGCACCAA 1158
Query 1115 AAAAGAAATGGCCATGCTACGGCAGAAATCATGTGTGGAGAAGATTAGAACTTATAGCAA 1174
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1159 AAAAGAAATGGCCATGCTACGGCAGAAATCATGCGTGGAGAAGATTAGAACTTATAGCAA 1218
Query 1175 AGGTGGTGGCTATAAGACGGCAAAGTTTGGTGGTTTCCTTGTGGAGAAAAGAAGCAAAGC 1234
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1219 AGGCGGTGGCTATAAGACGGCAAAGTTTGGTGGTTTCCTTGTGGAGAAAAGAGGCAAATC 1278
Query 1235 AGCTTCGGATTTACTGTCCGCACAGGCAAGAAATTCTTCATCGAAGATTACGACAGACGT 1294
|||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 1279 AGCTTCTGATTTACTTTCCGCACAGGCAAGAAATTCTTCATCAAAGATTACAACAGAGGT 1338
Query 1295 TATGAAAATTCCTTTAGCTGAGAGTAGCAGCACTCTCTCAAACAATACTAAGTCAGATTC 1354
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1339 TATGAAAATTCCTTTAGCTGAGAGTAGCAGCACTCTCTCAAACAGTACTAAGTCAGATTC 1398
Query 1355 GCCTGCATTAGATGTTAAGGAGCATGTTACTGCATTACCTGCTAATAATGCTCCAGCACC 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 GCCTGCATTAGATGTTAAGGAGCATGTTACTGCATTACCTGCTAATAATGCTCCAGCACC 1458
Query 1415 AGTAGCTTCAGAAAAGAAGTCCGGTTCCGAGCCTGAAGAAAAGGCTTCTGTGTCTAC-AA 1473
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||
Sbjct 1459 AGTAGCTTCAGAAAAGAAGTCCGGTTCTGAGCCTGAAGAAAAGCCTTCTGTGTCTACGAA 1518
Query 1474 AGCCAGCACCAGATTACTATGCTGCAATCCCATACGATGCATCTCTGGGAATATATGTTC 1533
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1519 A-CCAGCACCAGATTACTATGCTGCAATCCCATACGATGCAACTCTGGGAATATATATTC 1577
Query 1534 CCCGAAATAAAGGAGATGAATTAATTTTAAAGCTAGTTCCCCGAATGAAAGATCTGCAGA 1593
|||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1578 CCCGGAATAAAAGAGATGAATTGATTTTAAAGCTAGTTCCCCGAATGAAAGATCTGCAGA 1637
Query 1594 AAGAATTGCAGGATTGGACTGACTGGGCTAATCAGAAAGTAAAGCAGGCTACTGTTAGAC 1653
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1638 AAGAATTGCAGGATTGGACTGACTGGGCTAATCAGAAAGTAAAACAGGCTACTGTTAGAC 1697
Query 1654 TTCTTAAGGACCAACCAGAGCTTAAGGCACTaagaaaagagaaagaagaggcagaagagt 1713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 TTCTTAAGGACCAACCAGAGCTTAAGGCACTAAGAAAAGAGAAAGAAGAGGCAGAAGAGT 1757
Query 1714 tcagaaaagagaagcagttattggaagaaaaCACTATGAAAAGGAGATCTGAAATGGAGT 1773
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1758 TCAGAAAAGAGAAGCAGTTATTGGAAGAAAACACTATTAAAAGGAGATCTGAAATGGAGT 1817
Query 1774 TGGCCTTGAATAACGCAACCAACCAGCTTGAAAGAACTAACAACATAATTCGCAGGCTCG 1833
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1818 TGGCCTTGAATAACGCAACCAACCAGCTTGAGAGAACTAACAACACAATTCGCAGGCTCG 1877
Query 1834 AGCTGGAACAATCTCTGTTAAAGAGAGAGAGGGAAGCTGCTAATATAAGAGCTTCTGAGT 1893
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1878 AGCTGGAACAATCTCTGTTAAAGAGAGAGAGGGAAGCTGCTAATATAAGAGCTTCCGAGT 1937
Query 1894 CCGCTGAGAGCTGTAGAGAAGCAAAGGAGAGAGTGCAAATATTGTTGAAGAATGCTCAGT 1953
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
Sbjct 1938 CCGCTGAGAGCTGTAGAGAAGCAAAGGAGAGAGTGCAAAGATTGTTGAAGAATTCTCAAT 1997
Query 1954 CGTGGGAAGGGCAAAAGGTTTTGTTGCAGGAAGAGCTCAAGAGTCAAAGAGACAAGGTGG 2013
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1998 CGTGGGAAGGGCAAAAAAATTTACTGCAGGAAGAGCTCAAGAGTCAAAGAGACAAGGTGG 2057
Query 2014 CAGAGCTGCAGCAAGAAGTTGCCAAGGCAAAAACCCGACAAAACCAAATTGAGGCTACTT 2073
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2058 CAGGGCTGCAGCAAGAAGTTGCCAAGGCAAAAACCCGCCAAAACCAAATTGAGGCTACTT 2117
Query 2074 GGAAACAAGAAAAGGCAGCGACGGGGAAACTCACTACTCAAGCGGCTGCACTAAAGAAAG 2133
|||||||||||||| |||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 2118 GGAAACAAGAAAAGTCAGCGACGGGGAAACTCACTGCTCAAGCAGCTGCATTAAAGAAAG 2177
Query 2134 AGAGAGGGAAACTGGAAGAACTCGGAAAATCAGAAGAAGAGCGGATCAAAACAAAAGCAG 2193
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2178 AGAGAGGGAAACTGGAAGAACTCGGAAAAGCAGAAGAAGAGCGGATCAAAACAAAAGCAG 2237
Query 2194 AGAACGACGTGAAATACTACATTGAGAACATCAAAAGACTTGACACCGAGATCTCAAAGC 2253
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2238 AGAACGATGTGAAATACTACATTGAGAACATCAAAAGACTTGACACTGAGATCTCAAAGC 2297
Query 2254 TAAAACTCAAGTCAGACTGCTTGAAGATAGCTGCTTTGAAAAAAGGCGTAGACGGTAGCA 2313
| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 2298 TGAAACTCAAGTCAGACAGCTTGAAGATAGCTGCTTTGAAAAAAGGCATAGACGGAAACA 2357
Query 2314 ATGAC---AA---GAGCGGAATGAATCATACCACCACCACAAAGGCAAAC-CTGATGGCA 2366
||||| || ||| ||||||||||||||||||| ||||||||||||| | |||||||
Sbjct 2358 ATGACGGTAACAAGAGTGGAATGAATCATACCACCAACACAAAGGCAAACTC-GATGGCA 2416
Query 2367 GCAACAAAAGTATGGGAGAATAATCACGGGGCAGAGTCGAAAATCAAAAGAGAGAGGGAA 2426
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2417 TCAGCAAAAGTATGGGAGAATAATCAGGGGGCAGAGTCGAAAATCAAAAGAGAGAGGGAA 2476
Query 2427 TGTGTGATGTGTTTGTCTGAAGAGATGAGTGTGATTTTCTTGCCTTGTGCCCATCAGGTT 2486
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2477 TGTGTGATGTGTTTGTCTGAAGAGATGAGTGTGATATTCTTGCCTTGTGCCCATCAGGTT 2536
Query 2487 CTTTGCTCTAAATGTAACCAGCTTCATGAGAAGGAAGCCATGGAGGATTGTCCGTCTTGT 2546
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2537 CTTTGCTCTAAATGTAACCAGCTTCATGAGAAGGAAGCCATGGAAGATTGCCCGTCTTGT 2596
Query 2547 CGGGCCAAAATCCAGAGGAGGATTCAGGCTCGTTT--CTCCCATGGGTAAAAGCGCTCGG 2604
|| |||||||||||||||||||||||||||||||| ||| | ||||||||||||| ||
Sbjct 2597 CGAGCCAAAATCCAGAGGAGGATTCAGGCTCGTTTTGCTCGC--GGGTAAAAGCGCTTGG 2654
Query 2605 GTTTTGAATCAATATGGCAATGAAGGTTTTGCTTTGGTTTTATATCTTTGGACTGCTCTA 2664
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2655 GTTTTGAATCAATATGGCAATGAAGGTTTTGCTTTGGTTTTATCTCTTTGGACTGCTCTA 2714
Query 2665 TTTACATCTAAATTACACACATCTTGTAAAGAGTGACTTCACAATTTGCTCATTTCTATA 2724
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2715 TTTACATCTAAATTATACACAGCTTGTAAAGAGTGACTTCACAATTTGCTCATTTCTATA 2774
Query 2725 TTTCCCTCAATAATAAATGGAAGAAGACATTCCTAAAC 2762
| |||||||||||||||||||||||||| |||||||||
Sbjct 2775 TATCCCTCAATAATAAATGGAAGAAGACTTTCCTAAAC 2812
> AT1G03365.1 | Symbols: | RING/U-box superfamily protein | chr1:826569-830383
FORWARD LENGTH=2836
Length=2836
Score = 732 bits (396), Expect = 0.0
Identities = 717/869 (83%), Gaps = 34/869 (4%)
Strand=Plus/Plus
Query 1420 CTTCAGAAAAGAAGTCCGGTTCCGAGCCTGAAGAAAAGGCTTCTGTGTCTACAAAGCCAG 1479
|||||||||||||||| ||||| ||| ||||||| ||||| ||||||||| |||||| ||
Sbjct 1527 CTTCAGAAAAGAAGTCTGGTTCTGAGTCTGAAGAGAAGGCATCTGTGTCTGCAAAGCTAG 1586
Query 1480 CACCAGATTACTATGCTGCAATCCCATACGATGCATCTCTGGGAATATATGTTCCCCGAA 1539
|||||||||||||||||| |||||||| |||||| ||||||| ||||||||||||||
Sbjct 1587 CACCAGATTACTATGCTGGGATCCCATATGATGCAGCTCTGGGTATATATGTTCCCCGGG 1646
Query 1540 ATAAAG-GAGATGAATTAATTTTAAAGCTAGTTCCCCGAATGAAAGATCTGCAGAAAGAA 1598
|| ||| ||||||||| ||| ||||||| ||||| ||| |||| ||||||||||| |||
Sbjct 1647 AT-AAGAAAGATGAATTGATTCTAAAGCTTGTTCCTCGAGTGAATGATCTGCAGAATGAA 1705
Query 1599 TTGCAGGAT-TGGACTGACTGGGCTAATCAGAAAGT-AAAGCAGGCTACTGTTAGACTTC 1656
|||||| | |||||||||||||||||||||||||| |||| |||| |||| |||||| |
Sbjct 1706 CTGCAGG-TCTGGACTGACTGGGCTAATCAGAAAGTAAAAG-AGGCAACTGGTAGACTAC 1763
Query 1657 TTAAGGACCAACCAGAGCTTAAGGCACTaagaaaagagaaagaagaggcagaagagt-tc 1715
||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |
Sbjct 1764 TTAAGGACCAACCAGAGCTTAAGGCACTAAGGAAAGAGAGGGAAGAGGCAGAACAGTAT- 1822
Query 1716 agaaaagagaagcagttattggaagaaaaCACTATGAAAAGGAGATCTGAAATGGAGTTG 1775
| |||||||||||||||||||||||||||||||| ||||||| |||||| ||||| ||
Sbjct 1823 AAAAAAGAGAAGCAGTTATTGGAAGAAAACACTAGGAAAAGGCTATCTGAGATGGATTTT 1882
Query 1776 GCCTTGAATAACGCAACCAACCAGCTT-GAAAGAA-CTA-ACAACATAAT--TCGCAGGC 1830
|| ||||| || || |||| |||| || |||| || | | | | ||| | || |||||
Sbjct 1883 GCGTTGAAAAATGCGACCAGCCAG-TTGGAAA-AAGC-ATTC-A-ATACTGCTCACAGGC 1937
Query 1831 TCGAGCTGGAACAATCTCTGTTAAAGAGAGAGAGGGAAGCTGCTAATATAAGAGCT-TCT 1889
||||||||||||||||| | | |||| ||||| |||||||||||| |||| ||| ||
Sbjct 1938 TCGAGCTGGAACAATCTATACTGAAGAAAGAGATGGAAGCTGCTAAGATAAAAGCCGTC- 1996
Query 1890 GAGTCCGCTGAGAGCTGTAGAGAAGCAAAGGAGAGAGTGCAAATATTGTTGAAGAATGCT 1949
||||| |||||||||| |||||||||||| ||||||| | ||| || ||||| || |
Sbjct 1997 GAGTCTGCTGAGAGCTTTAGAGAAGCAAAAGAGAGAGGGGAAAGATCACTGAAGGATATT 2056
Query 1950 CAGTCGTGGGAAGGGCAAAAGGTTTTGTTGCAGGAAGAGCTCAAGAGTCAAAGAGACAAG 2009
|| ||||||||||||||||| || |||||||||||||||||||| ||||||| || |||
Sbjct 2057 CACTCGTGGGAAGGGCAAAAAATTATGTTGCAGGAAGAGCTCAAGGGTCAAAGGGAAAAG 2116
Query 2010 GTGGCAGAGCTGCAGCAAGAAGTTGCCAAGGCAAAAACCCGACAAAACCAAATTGAGGCT 2069
||| ||| ||| ||| |||||||| |||| ||||||| || || || ||||| ||||||
Sbjct 2117 GTGACAGTGCTACAGAAAGAAGTTACCAAAGCAAAAAATCGCCAGAATCAAATCGAGGCT 2176
Query 2070 ACTTGGAAACAAGAAA-AGGCAGCGACGGGGAAACTCACTACTCAAGCGGCTGCACT-A- 2126
||| ||| ||||||| | |||| | |||||||||| | |||| | | || || | |
Sbjct 2177 GCTTTGAAGCAAGAAAGAA-CAGCCAAAGGGAAACTCAGTGCTCA-G-G-CTTCATTGAT 2232
Query 2127 AAG-AAAGAGAGAG-GGAAACTGGAAGAACTCGGAAAA-TCAGAAGAAGAGCGGATCAAA 2183
||| ||||| | | |||| || |||| || |||||| | ||||||||||||||||||
Sbjct 2233 AAGGAAAGAAACAAAGGAA-CTTGAAGCGCTTGGAAAAGTG-GAAGAAGAGCGGATCAAA 2290
Query 2184 ACAAAAGCAGAGAAC-GACGTGAAATACTACATTGAGAACATCAAAAGACTTGACACCGA 2242
|||||||| ||| ||||||||||| ||||| || |||||||| |||||||| | ||
Sbjct 2291 GGGAAAGCAGA-AACCGACGTGAAATATTACATAGATAACATCAAGAGACTTGAAAGAGA 2349
Query 2243 GATCTCAAAGCTAAAACTCAAGTCAGACT 2271
||||||| |||| ||||| || |||||||
Sbjct 2350 GATCTCAGAGCTGAAACTTAAATCAGACT 2378
Score = 641 bits (347), Expect = 0.0
Identities = 834/1062 (79%), Gaps = 61/1062 (6%)
Strand=Plus/Plus
Query 174 AAGCAAGAAGAAATGAAT-GAGTGTGGTGCTGTAAATGGTGGCAAAGTGGGAACGTC-TT 231
||||||||||| |||||| || |||||| | | |||| || |||||| ||| | | ||
Sbjct 188 AAGCAAGAAGAGATGAATGGA-TGTGGT-C--TCAATGTTGACAAAGT-AGAA-GCCTTT 241
Query 232 -CA---CCACCGCAAGAGAAAGGAAGGAAGAACAAGAGAAAGTTAGCTGATCCTTCTCCA 287
|| |||| || || ||||||||||| |||||||||||||||||||||||||||| |
Sbjct 242 ACAGTGTCACCTCAGGAAAAAGGAAGGAAAAACAAGAGAAAGTTAGCTGATCCTTCTCAA 301
Query 288 CAAAATGCTGCTTCTTTGACTGAATTCCCTCGATATGAGTTACATTCACTCAAATCTCA- 346
| ||||||| |||| | ||||||||||||| ||||||||||| ||| | ||| ||||
Sbjct 302 CCAAATGCTTCTTCCCTCACTGAATTCCCTCCATATGAGTTACCTTCGTTGAAACCTCAG 361
Query 347 AAGCACTTTGTGTGAAAATG-A-C--TCG---AA----CGGG-CAGCTGAAAGCGGAAGA 394
|| || |||| | | ||||| | | | | || | |||||| ||| ||||
Sbjct 362 AACCA-TTTGAGCGGAAATGGATCGGTTGGGGAAGTTTCTAATCAGCTGCAAGTTGAAGT 420
Query 395 GTCTGACTCCGTAGGATGGGATGATCCC-TTTGCTTGTCAACTCGAACAACTT-TTATCA 452
|||||| || || | ||||||||| ||| ||||| ||||| || ||| || || || ||
Sbjct 421 GTCTGAATCTGTCGAATGGGATGA-CCCATTTGCCTGTCATCTTGAAGAA-TTGTTGTCG 478
Query 453 TCAAATTTGCTCACCCTCTTCCGT-AGTGCAATGAATCAGATTATGGATTGTGGGTTT-A 510
|||||||||||||| ||||||| | | | ||||||| ||| |||| |||| | || | |
Sbjct 479 TCAAATTTGCTCACGCTCTTCCTTGA-TACAATGAAGCAGCTTATTGATT-TAGGCTACA 536
Query 511 GTGAGGATGTTGTTCTCAAAGCTATTTCAAGCAGTAGGCTCTACTCTGGGGGAAATGATC 570
|| || | ||||| |||||| | ||| || ||||||| |||| ||| || ||| |||
Sbjct 537 CCGATGACGAAGTTCTGAAAGCTGTATCACGCTGTAGGCTGTACTGTGGAGGCAATAATC 596
Query 571 TCGTCTCTAACATTGTTAATGATACCTTGAGTTTTTTGAAGAGTGGAAAA-AATGTTGCT 629
| | || |||||||| ||| | ||||||||| | | |||| |||| | || || |||
Sbjct 597 TTTTGTCAAACATTGTCAATAACACCTTGAGTGCTCTCAAGACTGGAGACGAAGGT-GCT 655
Query 630 GGTTCGAG-AGACTATGTGTTTGAGGATTTGCAACAGCTTGTTGCCTATACTTTGGTAGA 688
||||| || ||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 656 GGTTC-AGGAGACTATGTGTTTGAGGATTTACAACAGCTTGTTTCCTATACGTTGGTAGA 714
Query 689 GAA-GATAAGTCTTGTTAGGGAGGTTAGACCATCGCTTTCAACAGTCGAAGCTATGTGGA 747
|| |||||||||| ||| |||||| || || || || |||||||| |||||||||||||
Sbjct 715 -AATGATAAGTCTTATTAAGGAGGTCAGGCCGTCCCTATCAACAGTTGAAGCTATGTGGA 773
Query 748 GGCTGTTGATGTGTGACTTGAATGTTTTGCAAGCTTTTGAAG-TGGAAGGAGATGGATTG 806
|||| |||||||| ||||||||||| |||||||| ||||||| || |||| |||||||||
Sbjct 774 GGCTTTTGATGTGCGACTTGAATGTCTTGCAAGCCTTTGAAGCTG-AAGGCGATGGATTG 832
Query 807 GAGGGCTCTTCGGGTTCCAATGCAAGTAAATCATCGGAATCTCCAGTTTCTGAGTGTAAT 866
| | | | | | || ||| | | | | |||||||||| | | |||| | ||||
Sbjct 833 GTGAG-T-T-CAAGTA--AATT-ATCTGA-T--TCGGAATCTCTTGGTGCTGAATCTAAT 883
Query 867 CCTTCAAAATCTAGTGGCTCGGATAACCCAAAGGCGCCC-ATATCCAATACTCAAAGCAA 925
||| |||||||||||| | | |||||||||||| | ||| | |||| || ||||||||||
Sbjct 884 CCTCCAAAATCTAGTGACCCAGATAACCCAAAGCCTCCCCA-ATCCGATCCTCAAAGCAA 942
Query 926 TCAGAGTGAGCCAGTCAAATTTGGGAACTTCCCAAATGTGAAC-AACTCCAAAAATCCTC 984
|| || ||||||| |||||||||| |||||||||||| | | ||||||||||| |||
Sbjct 943 TCGGAATGAGCCACTCAAATTTGGAAACTTCCCAAATAC-ACCGAACTCCAAAAAAACTC 1001
Query 985 A-TGCTAGTGGAGCAACCCCTGGAAAAGAGGTATTTTCTGTTTCCACTGCTTCTGGTGAA 1043
| | |||||||| |||| || |||||||| |||| || | | ||||| |||| || ||
Sbjct 1002 AGT-CTAGTGGAACAACACCAGGAAAAGAAGTATGCTCGGGTAGCACTGTTTCTTGTCAA 1060
Query 1044 GGCACTAA-AAGTGCATCCCTGACTTCT-GTTTCTGATGAAAAATTAGTATCTTGTCGAA 1101
|||| | | |||| |||| | ||| || || |||||||||||||| |||||||||||||
Sbjct 1061 GGCA-TGAGAAGTACATCATTTACT-CTAGTCTCTGATGAAAAATTGGTATCTTGTCGAA 1118
Query 1102 AAGGCCGCACCAAAAAAGAAATGGCCATGCTACGGCAGAAATCATGTGTGGAGAAGATTA 1161
||||||| || |||||||| || || ||||| ||||| |||||||||||||| || ||||
Sbjct 1119 AAGGCCGTACTAAAAAAGAGATAGCAATGCTTCGGCAAAAATCATGTGTGGAAAAAATTA 1178
Query 1162 GAACTTATAGCAAAGGTGGTGGCTATAAGACGGCAAAGTTTG 1203
| ||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1179 GGACTTACAGCAAAGGCAGTGGCTATAAGGCGGCAAAGTTTG 1220
Score = 204 bits (110), Expect = 4e-51
Identities = 159/182 (87%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 2404 CGAAAATCAAAAGAGAGAGGGAATGTGTGATGTGTTTGTCTGAAGAGATGAGTGTGATTT 2463
||||| | |||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2451 CGAAAGTGAAAAGAGAAAGAGAATGTGTGATGTGTTTATCTGAAGAGATGAGTGTGATTT 2510
Query 2464 TCTTGCCTTGTGCCCATCAGGTTCTTTGCTCTAAATGTAACCAGCTTCATGAGAAGGAAG 2523
||||||||||||| || || |||||||||| |||||| || |||||||| ||||| ||||
Sbjct 2511 TCTTGCCTTGTGCTCACCAAGTTCTTTGCTTTAAATGCAATCAGCTTCACGAGAAAGAAG 2570
Query 2524 CCATGGA-GGATTGTCCGTCTTGTCG-GGCCAA-AATCCAGAGGAGGATTCAGGCTCGTT 2580
||| | |||||||||||||||||| || || |||||| ||||||||||| |||||||
Sbjct 2571 GAATG-ATGGATTGTCCGTCTTGTCGTGG--AACAATCCATAGGAGGATTCAAGCTCGTT 2627
Query 2581 TC 2582
||
Sbjct 2628 TC 2629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137206589105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5