BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490263
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02990.1 | Symbols: | Mitochondrial transcription terminati... 2647 0.0
> AT4G02990.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr4:1321859-1324004 FORWARD LENGTH=1914
Length=1914
Score = 2647 bits (1433), Expect = 0.0
Identities = 1673/1784 (94%), Gaps = 35/1784 (2%)
Strand=Plus/Plus
Query 1 AAAAAACCTTACCCGCTCCTCTAAAACCCTCGTCTTCTCCGATATCTTTCCTTATCTCCG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1 AAAAAACCTTACCCGCTCCTCTAAAACCCTCGTCTTCTCCGATATCTTTCCTCAGCTCCG 60
Query 61 GTAAAGAATGAAGATTAGGTTCTGTAGCGGCTTCACAAAGCCTGGGTTTTTGTTAGTTCA 120
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 61 GTAAAGAATGAAGATTAGGTTCTGTAATGGCTTCACAAAGCCTGGGTTTTTGCTAGTTCA 120
Query 121 CTTTGAGCCACCATCGttttttt-CCGTTAGATCTCGTTCACTCTCTGATTCCACTTATG 179
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTTGAGCCACCATC-TTTTTTTGCCGTTAGATCTCGTTCACTCTCTGATTCCACTTATG 179
Query 180 GCAAC---T------ACAAGAAGAGACCTGGAATTGGAATTGG--T-ACTGTTCAATGCG 227
||||| | |||||||||||||||| | ||||||||| | |||||||||||||
Sbjct 180 GCAACTTATGCAACCACAAGAAGAGACCTGGGACTGGAATTGGTCTAACTGTTCAATGCG 239
Query 228 CTATTGCAAATCGGAGATTTTCTTCACGTTCTGTGGATTCATCACCGAAAAGAGAAAGGT 287
|||||||||||||||||||||||||||||||| |||| | ||||||| |||||||||||
Sbjct 240 CTATTGCAAATCGGAGATTTTCTTCACGTTCTTTGGA-T--TCACCGAGAAGAGAAAGGT 296
Query 288 CGTCTCG----TC--CTTCTTC--G-A--GA-AGGGATAGGGATAAGGATAAAGGAAGAG 335
| ||||| || ||||||| | | || |||||||| ||||||||||| |||||||
Sbjct 297 CTTCTCGTTCTTCTTCTTCTTCGGGAAGGGATAGGGATAGAGATAAGGATAAGGGAAGAG 356
Query 336 ATTCTCAGTCTTTGTATAGTCGTCCTAGTTTGTTAGAGATGAATAAGGAGAAAGCTGCTA 395
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 357 ATTCTAAGTCTTTGTATAGTCGTCCTAGTTTGTTAGATATGAATAAGGAGAAAGCTGCTA 416
Query 396 ATCGTGCTAAGGTTTATGAGTTCTTGCGTGGGATTGGGATTGTTCCTGATGAGCTTGATG 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ATCGTGCTAAGGTTTATGAGTTCTTGCGTGGGATTGGGATTGTTCCTGATGAGCTTGATG 476
Query 456 GTCTTGAACTCCCTGTAACAGCTGATGTGATGAAAGAGCGTGTGGAGTTTCTTCACAAGT 515
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 477 GCCTTGAACTCCCTGTAACAGCTGATGTGATGAAAGAGCGTGTCGAGTTTCTTCACAAGT 536
Query 516 TAGGGCTTACCATTGAAGATATCAACAATTACCCTCTTGTTCTTGGTTGTAGCGTGAAGA 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TAGGGCTTACCATTGAAGATATCAACAATTACCCTCTTGTTCTTGGTTGTAGCGTGAAGA 596
Query 576 AGAACATGGTTCCGGTTCTTGATTATCTCGGGAAACTAGGCGTGAGGAAATCGACTTTCA 635
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 597 AGAACATGGTTCCGGTTCTTGATTATCTCGGGAAACTAGGCGTCAGGAAATCGACTTTCA 656
Query 636 CTGAGTTTCTTAGAAGATACCCGCAGGTTCTTCA-TGCTAGTGTTGTTATAGATCTTGCA 694
|||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||
Sbjct 657 CTGAGTTTCTTAGAAGATACCCGCAGGTTCTTCACT-CTAGCGTTGTTATAGATCTTGCA 715
Query 695 CCGGTGGTCAAGTATCTTCAAGGACTGGATATTAAACCCAGCGATGTACCTCGGGTGCTT 754
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 716 CCGGTGGTTAAGTATCTTCAAGGACTGGATATTAAACCGAGTGATGTACCTCGGGTGCTT 775
Query 755 GAGAGGTATCCAGAAGTTTTAGGGTTTAAGCTGGAAGGGACTATGAGCACATCAGTCGCG 814
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 776 GAGAGGTATCCAGAAGTTTTGGGGTTTAAGCTGGAAGGGACTATGAGCACATCAGTCGCT 835
Query 815 TATTTGGTGGGTATAGGTGTAGCTAGGAGGGAGATTGGTGGTGTTTTAACACGGTACCCT 874
|||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 836 TATTTGGTTGGTATAGGTGTAGCTAGGAGGGAGATTGGGGGTATTTTAACACGGTACCCT 895
Query 875 GAGATTTTGGGAATGCGGGTAGCTCGGATAATTAAGCCTCTCGTGGAGTATCTCGAGCAC 934
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GAGATTTTGGGAATGCGGGTAGCTCGGATAATTAAGCCTCTCGTGGAGTATCTCGAGGTT 955
Query 935 CTTGGTATTCCGAGACTGGCTGTAGCTAGGTTGATTGAGAAGCGGCCTCACATTCTCGGG 994
|||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||
Sbjct 956 CTTGGTATTCCGAGACTGGCTGCAGCTAGGTTGATAGAGAAGCGGCCTCACATACTCGGG 1015
Query 995 TTCGAATTGGATGATACGGTGAAACCAAACGTGCAAATCCTGCAAGATTTCAATGTCAGA 1054
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TTTGAATTGGATGATACGGTGAAACCAAACGTGCAAATCCTGCAAGATTTCAATGTCAGA 1075
Query 1055 GAAACATGTCTTCCTTCTATAATTGCACAGTATCCTGAAATCATAGGAATCGACCTGAAA 1114
||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1076 GAAACATCTCTTCCTTCTATAATTGCGCAGTATCCTGAAATCATCGGAATCGACCTTAAA 1135
Query 1115 CCTAAGCTTGAGACGCAAAAGAAGCTACTTTGTTCAGCCATTGATCTAAATCCAGAGGAT 1174
|||||||| || || || | |||||||||||||||||||||| |||||||||||||||||
Sbjct 1136 CCTAAGCTCGACACACAGAGGAAGCTACTTTGTTCAGCCATTCATCTAAATCCAGAGGAT 1195
Query 1175 ATCGGCTCTTTGATCGAGAGAATGCCGCAGTTTGTTAGTCTCAGCGAGTCTCCTATGTTA 1234
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CTTGGCTCTTTGATCGAGAGAATGCCGCAGTTTGTTAGTCTCAGCGAGTCTCCTATGTTA 1255
Query 1235 AAGCACATTGACTTCCTTACCAAGTGTGGGTTTTCAATCGACCAAACGAGGGAAATGGTA 1294
||||||||||| ||||||||||||||||| ||||| || |||||||| ||||||||||||
Sbjct 1256 AAGCACATTGATTTCCTTACCAAGTGTGGATTTTCGATAGACCAAACAAGGGAAATGGTA 1315
Query 1295 ATCGGATGTCCACAGGTTCTGGCTTTGAACCTCGGAATAATGAAACTCAGCTTTGAATAC 1354
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1316 ATCGGGTGTCCTCAGGTTCTGGCTTTGAACCTCGGAATAATGAAACTCAGCTTTGAGTAC 1375
Query 1355 TTCCAAAAGGAAATGAGAAGACCTCTTCAAGATCTTGTGGATTTCCCCGCATTCTTTACC 1414
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1376 TTCCAAAAGGAAATGAAAAGACCTCTTCAAGACCTTGTGGATTTCCCCGCATTCTTTACG 1435
Query 1415 TATGGGCTTGAGTCCACGGTAAAGCCGAGGCACAAGAAGATAATCAAGAAAGGAATAAAA 1474
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 1436 TATGGGCTTGAGTCCACGGTAAAGCCGAGACACAAGAAGATAATCAAGAAGGGAATCAAA 1495
Query 1475 TGTTCATTGGCTTGGATGCTCAACTGTTCAGATGAGAAGTTCGAACAGAGAATGAGCTAC 1534
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TGTTCATTGGCTTGGATGCTAAACTGTTCAGATGAGAAGTTCGAACAGAGAATGAGCTAC 1555
Query 1535 GACACAATAGATATAGAAGAGGTAGAATCTGATCCATCTTCTTTTGACATGAGTACATTA 1594
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1556 GACACAATAGATATAGAAGAGGTAGAAACTGATCCATCTTCTTTTGACATGAATACATTG 1615
Query 1595 ATGCAACCCGAAAGAGAGGAGGAATCTGATTCCGAGTACGAGGAAGAAGAAAATGACGAC 1654
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1616 ATGCAACCTGAAAGAGAGGAGGAATCTGATTCCGAGTACGAGGAAGAAGAAGATGATGAC 1675
Query 1655 GACGAGGAGTTTGCTTAAACCTGGAGTTTGCTTAACaaaaaaaaGCTCCAAATGCAGACA 1714
|||||||||||||| |||||| |||||| | |||||| ||||| ||||||| ||||||
Sbjct 1676 GACGAGGAGTTTGCATAAACCCGGAGTT--C--AACAAAGAAAAGGTCCAAATACAGACA 1731
Query 1715 ATGAATTGAAGTACAAGCTTTGTGTCTTGATGGATCATCATCAT 1758
|||||| |||| |||||||| |||||||||| |||||||||||
Sbjct 1732 ATGAATCGAAGAACAAGCTTCATGTCTTGATGTATCATCATCAT 1775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89808775005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5