BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490264
Length=728
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02980.1 | Symbols: ABP1, ABP | endoplasmic reticulum auxin ... 1177 0.0
> AT4G02980.1 | Symbols: ABP1, ABP | endoplasmic reticulum auxin
binding protein 1 | chr4:1319656-1321477 REVERSE LENGTH=871
Length=871
Score = 1177 bits (637), Expect = 0.0
Identities = 697/727 (96%), Gaps = 0/727 (0%)
Strand=Plus/Plus
Query 1 GAAGCATCTAGAAAATGATCCTACTTTCGGTTGGTTCCGCTTCGTCATCTCCGATCGTCG 60
|||||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||
Sbjct 15 GAAGCATCGAGAAAATGATCGTACTTTCTGTTGGTTCCGCTTCTTCATCTCCGATCGTCG 74
Query 61 CCGTATTCTCCGTCGCGCTTCTTCTGTTCTATTTCTCTGAAACTACTCTAGGAGCTCCTT 120
||| || ||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 75 TCGTCTTTTCCGTCGCGCTTCTTCTGTTCTACTTCTCTGAAACTTCTCTAGGAGCTCCTT 134
Query 121 GTCCCATCAATGGCTTGCCAATCGTGAGGAATATTAGTGACCTTCCTCAAGATAACTATG 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 135 GTCCCATCAATGGCTTGCCAATCGTGAGGAATATTAGTGACCTTCCTCAGGATAACTATG 194
Query 181 GAAGACCAGGTCTTTCCCACATGACTGTTGCTGGCTCCGTATTGCACGGAATGAAAGAGG 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 195 GAAGACCAGGTCTTTCCCACATGACTGTTGCTGGCTCCGTATTGCATGGAATGAAAGAGG 254
Query 241 TTGAAATATGGCTTCAAACATTTGCTCCAGGTTCAGAGACACCAATTCACAGGCACTCCT 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 TTGAAATATGGCTTCAGACATTTGCTCCAGGTTCAGAGACACCAATTCACAGGCACTCCT 314
Query 301 GTGAAGAGGTCTTTGTTGTCCTAAAGGGCAGTGGTACTCTGTATCTTTCTGAGACCCATG 360
|||||||||| ||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 315 GTGAAGAGGTTTTTGTTGTCCTAAAGGGCAGTGGTACTCTGTATCTCGCTGAAACACATG 374
Query 361 GAAATTTCCCTGGGAAACCAATTGAATTTCCTATCTTTGCTAACAGTACACTTCATATTC 420
|||||||||||||||||||||| |||||||| |||||||| ||||||||| |||||||||
Sbjct 375 GAAATTTCCCTGGGAAACCAATCGAATTTCCAATCTTTGCCAACAGTACAATTCATATTC 434
Query 421 CGATCAATGATGCTCATCAGGTCAAGAACACCGGTCATGAGGACCTGCAGGTGTTGGTTA 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 435 CGATCAATGATGCTCATCAGGTCAAAAACACCGGTCATGAGGACCTGCAGGTGTTGGTTA 494
Query 481 TCATATCTCGGCCGCCTATTAAAATCTTCATCTACGAAGACTGGTTTATGCCACACACTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TCATATCTCGGCCGCCTATTAAAATCTTCATCTACGAAGACTGGTTTATGCCACACACTG 554
Query 541 CTGCGAGGTTGAAGTTCCCTTACTATTGGGATGAGCAATGCGTTCAAGAATCGCAAAAAG 600
|||| ||| |||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 555 CTGCAAGGCTGAAGTTCCCTTACTATTGGGATGAGCAATGCATTCAAGAATCACAAAAAG 614
Query 601 ACGAGCTTTAAAGCAAAGTCCGAGGCCAAAACCAAGCACACCCTTTAGATAGTAAAATCA 660
|||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||
Sbjct 615 ACGAGCTTTAAAGCAAAGTCCGAGGCTAAAAGCAAGCACAACCTTTAGATAGTAAAATCA 674
Query 661 TAGTTGAGGTTTTGTGACATTACGTAGATACTGGTAAATTGGCAAGGATTTTACATGAAT 720
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 675 TAGTTGAGGTTTTGTGACACTACGTAGATACTGGTAAATTGGCAAGGATTTTACATGAAT 734
Query 721 GTTGTTG 727
|||||||
Sbjct 735 GTTGTTG 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35314605341
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5