BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490265
Length=2051
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02940.1 | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase ... 2996 0.0
> AT4G02940.1 | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase
family protein | chr4:1306503-1310946 FORWARD LENGTH=2112
Length=2112
Score = 2996 bits (1622), Expect = 0.0
Identities = 1935/2075 (93%), Gaps = 65/2075 (3%)
Strand=Plus/Plus
Query 30 ACCCGACCCGGCCCACATTTCCAACCCATTTTCA-CCTTTTTCTGTTTCCGCCGCCGACT 88
|||||||||||||||||||| |||||||||| | || ||||||||||||||||||||||
Sbjct 42 ACCCGACCCGGCCCACATTTTAAACCCATTTT-AGCC-TTTTCTGTTTCCGCCGCCGACT 99
Query 89 GATC-G----ATC---C--CGAGAGAATAACTGAATCTTTCACCGGAGTTCAACGCCGAT 138
|||| | ||| | ||||||| ||||||||| ||| ||||| | | ||||||||
Sbjct 100 GATCGGAATAATCGATCAAAGAGAGAACAACTGAATC-TTCGCCGGA-TACTACGCCGAT 157
Query 139 GACGATTGCGGCAGCACAAGCACGCCAGACAGATCGATCAACCACTGGTTTC-A--CT-- 193
||||||||||||||| | |||||||||||||||||||||| ||||||||||| | ||
Sbjct 158 GACGATTGCGGCAGCGCCAGCACGCCAGACAGATCGATCAGCCACTGGTTTCAACCCTGC 217
Query 194 TT-CG-CAACGACGGCGAAGGCGGTGA-CTGTTCCGGTTCAAGTTCCACCGG-GAACTGT 249
|| || | ||||||||||||||||||| | ||||||||||||||||| |||| | |||||
Sbjct 218 TTACGTC-ACGACGGCGAAGGCGGTGAGC-GTTCCGGTTCAAGTTCCTCCGGCG-ACTGT 274
Query 250 GGTTTCCGAAGGATTAGGTAAAGATGCGTTAATCTCGTGGTTCAGAGGAGAATTCGCGGC 309
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 275 GGTTTCCGAAGGATTAGGTAAAGATGCGTTGATCTCATGGTTCAGAGGAGAATTCGCTGC 334
Query 310 GGCGAACGCTATAATCGACGCGATGTGCTCGCATCTTAGGATAACTGAAGAAGCGGTGTC 369
||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||||| ||
Sbjct 335 GGCAAACGCGATAATCGACGCGATGTGCTCGCATCTAAGGATAGCTGAAGAAGCGGTATC 394
Query 370 TGGATCGGGA-TACGAAGCTGTTTTCGCGGCGATCCATCGCCGGCGTCTGAATTGGATCC 428
|||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 395 TGGATC-GGAGTACGAAGCTGTATTCGCGGCGATCCATCGCCGTCGTCTGAATTGGATCC 453
Query 429 CTGTTCTTCAGATGCAGAAGTATCATTCCATCGCTGAAGTCGCGATCGAGCTTCAAAAAG 488
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 454 CTGTTCTTCAGATGCAGAAGTATCATTCCATCGCTGAAGTAGCGATCGAGCTTCAGAAAG 513
Query 489 TGGCGGCTAAGAAAGCGGAGGATCTGAAACAGAAGAAAAC--a-gagga---ggaggaag 542
|||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 514 TGGCGGCTAAGAAAGCGGAGGATCTGAAACAGAAGAAAACAGAGGAGGAGGCGGAGGAAG 573
Query 543 atctgaaaga---ggtggcggcggaggaggaggaagtggagaagaaagaTTGTTTTAACG 599
|||||||||| ||||||| ||||||| |||||||| ||||||||| ||||||||||
Sbjct 574 ATCTGAAAGAGGTGGTGGCGACGGAGGAAGAGGAAGT---GAAGAAAGAGTGTTTTAACG 630
Query 600 GCGAGAAACTAACGGAAAATGACGTAAACGGAGATGTGGAAGACGTTGAAGATGATTCAC 659
|||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 631 GCGAGAAAGTAACGGAGAATGACGTAAACGGAGATGTAGAAGACGTTGAAGATGATTCAC 690
Query 660 CAACTAGTGATATCACTGATTCAGGTTCTCACCAGGATGTTCACCAAACTGCTGCTGCGG 719
||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 691 CAACTAGTGATATCACTGATTCAGGTTCTCATCAGGATGTTCACCAAACTGTTGTTGCGG 750
Query 720 ATACGGCACATCAGATAATATGCCAGAGCCATGAAGATTGTGAAGCACGGTCATGTGAGA 779
|||| ||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 751 ATACTGCACATCAGATTATATGCCATAGCCATGAAGATTGTGATGCACGTTCATGTGAGA 810
Query 780 TTAAGCCTATCAAAGGTTTCCAAGCCAAAGAGCAAGTCAAAGGACACACTGTGAATGTTG 839
| || |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 811 TCAAACCTATCAAAGGTTTCCAAGCTAAAGAACAAGTCAAAGGCCACACTGTGAATGTTG 870
Query 840 TGAAAGGACTAAAGCTGTATGAAGAATTACTTAAAGAAGATGAGATATCTAAATTGATCG 899
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 871 TGAAAGGACTAAAGCTGTATGAAGAGTTACTTAAAGAAGATGAGATATCTAAATTGTTAG 930
Query 900 ACTTTGTGGCAGAACTCCGAGAAGCTGGCATTAACGGAAAGCTAGCAGGTGAGAGCTTTA 959
|||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 931 ACTTTGTGGCAGAACTACGAGAAGCTGGCATAAACGGGAAGCTTGCAGGTGAGAGCTTTA 990
Query 960 TACTGTTCAACAAACAGATTAAAGGGAACAAGAGAGAGCTGATTCAGCTTGGTGTCCCCA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 TACTGTTCAACAAACAGATTAAAGGGAACAAGAGAGAGCTGATTCAGCTTGGTGTCCCCA 1050
Query 1020 TCTTTGGCCATGTTAAGGCGGATGAAAACTCTAACGACACCAACAACTCTGTTAACATTG 1079
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1051 TCTTTGGTCATGTCAAGGCGGATGAAAACTCTAACGACACCAACAACTCTGTTAACATCG 1110
Query 1080 AGCCAATTCCACCACTTCTTGAGAGTGTGATTGATCACTTTGTCACATGGAGACTCATCC 1139
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1111 AGCCAATTCCACCACTTCTTGAGAGTGTCATTGATCACTTTGTCACATGGAGACTCATCC 1170
Query 1140 CAGAATACAAGAGACCAAACGGCTGTGTCATCAACTTCTTTGAAGAGGGTGAATACTCAC 1199
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 CAGAATACAAGAGACCTAACGGCTGTGTCATCAACTTCTTTGAAGAGGGTGAATACTCAC 1230
Query 1200 AGCCTTTCCTCAAACCACCACATC-TAGAACAACCAATCTCCACTCTTGTTCTCTCTGAA 1258
||||||||||||||||||| || | ||||||||||||||||||||||||| |||||||||
Sbjct 1231 AGCCTTTCCTCAAACCACCTCA-CTTAGAACAACCAATCTCCACTCTTGTCCTCTCTGAA 1289
Query 1259 TCAACAATGGCCTATGGACGCATTCTCTCTAGTGACAACGAAGGCAACTTCAGAGGACCT 1318
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1290 TCAACAATGGCCTATGGACGCATTCTCTCAAGTGACAACGAAGGCAACTTCAGAGGACCT 1349
Query 1319 TTAACTCTTTCTCTCAAACAAGGATCTTTGTTGGTGATGAGAGGGAACAGTGCAGACATG 1378
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 TTGACACTCTCTCTCAAACAAGGATCTTTGTTGGTGATGAGAGGGAACAGTGCAGACATG 1409
Query 1379 GCAAGACATGTAATGTGTCCATCACAAAACAAAAGAGTAAGCATCACATTCTTTCGTATT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 GCAAGACATGTAATGTGTCCATCACAAAACAAAAGAGTAAGCATCACATTCTTTCGTATT 1469
Query 1439 CGACCTGACACATATCATAACCATTCACAACCCAACAGTCCTCGCAACGACGGTGTAATG 1498
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1470 CGACCTGACACATATCATAACCATTCACAACCCAACAGTCCTCGCAACGACGGTGTCATG 1529
Query 1499 ACAATGTGGCAACCTTACCAAATGACACCAACTCCATTCCTCAATGGCTATGATCATTCA 1558
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1530 ACAATGTGGCAACCCTACCAAATGACACCAACTCCATTCCTCAATGGTTATGATCATTCA 1589
Query 1559 ATTGACATGATGCCAAAACTTGGAGTCCTACGTCCTCCAATGGTCATGATGGCACCACCA 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1590 ATTGACATGATGCCAAAACTTGGAGTCCTACGTCCTCCAATGGTCATGATGGCACCACCA 1649
Query 1619 CCAGTTCAACCAATGATATTACCAAGTCCCAATGTGATGGGAACCGGTGGTGGTACCGGT 1678
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 CCGGTTCAACCAATGATATTACCAAGTCCCAATGTGATGGGAACCGGTGGTGGTACCGGT 1709
Query 1679 GTTTTCTTACCATGGGCCTCTGTTAATAGCTCAAGAAAACATGTGAAGCATTTGCCTCCA 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1710 GTTTTCTTACCATGGGCCTCTGTTAATAGCTCAAGAAAACATGTGAAGCATTTGCCTCCA 1769
Query 1739 CGCGCGCAGAAGAAGCGATTACTTCCGCTTCCTCCTGCTGCTTCTTCTTCTCCAGCTGGA 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1770 CGCGCGCAGAAGAAGCGATTACTTCCGCTTCCTCCTGCTGCTTCTTCTTCTCCAGCTGGA 1829
Query 1799 GGATCCACCTCTGAGCCTGTGATCAGTGTCGGTTAAGCCTATTCGACTTCTTCAGCaaaa 1858
||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||
Sbjct 1830 GGATCCACCTCTGAGCCTGTGATCACTGTAGGTTAATCCTATTCGACTTCTTCAGCAAAA 1889
Query 1859 a-aaaaaaaaGCTTTGAACTGGTCTGTGTCTAAGCCATGCTCTGTTTCTTCTCT-TT-T- 1914
| |||||||| ||| ||| |||||| | ||||||| |||||||||||||||||| || |
Sbjct 1890 AGAAAAAAAAACTTGGAATTGGTCTTTTTCTAAGCAATGCTCTGTTTCTTCTCTGTTCTG 1949
Query 1915 ---C---------------AAATTCAGTTTAGGTTAACTCAGGTTTTATAGATAGAATTA 1956
| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1950 TTTCTTTTTTTGTTCTTTCAAATTCAGTTTAGGTTAACTCAGGTTTTATAGATAGAATTA 2009
Query 1957 AGTTTGTTACATCCCCAGAGGCATGTGTTTTCTATTTTGTGTACGATTTTATTATCAGTA 2016
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2010 AGTTTGTTACATCCCCCGAGGCATGTGTTTTCTACTTTGTGTACGATTTTATTATCAGTA 2069
Query 2017 TATTCTCAAAATGTTACCTTTCATTGCTAGTTTTC 2051
|||||||||||||||||||||||||||||||||||
Sbjct 2070 TATTCTCAAAATGTTACCTTTCATTGCTAGTTTTC 2104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101656103625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5