BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490266
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02930.1 | Symbols: | GTP binding Elongation factor Tu fami... 2320 0.0
> AT4G02930.1 | Symbols: | GTP binding Elongation factor Tu family
protein | chr4:1295409-1298404 REVERSE LENGTH=1757
Length=1757
Score = 2320 bits (1256), Expect = 0.0
Identities = 1390/1456 (95%), Gaps = 4/1456 (0%)
Strand=Plus/Plus
Query 2 CCTTTCTCTTGTACAAGTCAAAATGGCGTCCGTAGTTCTTCGAAACCCTAGCTCGAAGCG 61
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 29 CCTTTCTCTCGTACAAGTCAAAATGGCGTCCGTTGTTCTTCGAAACCCTAGCTCGAAGCG 88
Query 62 TCTTGTTCCATTCTCTTCCCAGATCTACTCTCGTTGCGGTGCTTCTATTACTTCCTCTTA 121
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 89 CCTTGTTCCATTCTCTTCCCAGATCTACTCTCGCTGTGGTGCTTCCGTTACTTCCTCTTA 148
Query 122 CTCGATCTCTCATTCTATCGGTGGAGATGATCTCTCTTCCTCTACCTTCGGAACCTCTTC 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 149 CTCGATCTCTCATTCTATCGGTGGAGATGATCTCTCTTCCTCTACCTTCGGAACCTCCTC 208
Query 182 CTTGTGGAGATCCATGGCCACTTTTACTCGAAATAAACCTCATGTAAATGTTGGAACTAT 241
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 CTTCTGGAGATCCATGGCCACTTTTACTCGAAATAAACCTCATGTAAATGTTGGAACTAT 268
Query 242 TGGGCATGTTGATCATGGAAAGACCACTTTAACTGCTGCAATCACAAAGGTTCTTGCTGA 301
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 269 TGGGCATGTTGATCATGGCAAGACCACTTTAACTGCTGCAATCACAAAGGTTCTTGCTGA 328
Query 302 GGAGGGCAAAGCTAAAGCTATTGCCTTTGATGAAATTGATAAAGCTCCTGAAGAGAAGAA 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 GGAGGGCAAAGCTAAAGCTATTGCCTTTGATGAAATTGATAAAGCTCCTGAAGAGAAGAA 388
Query 362 GAGAGGAATTACTATTGCCACGGCTCATGTGGAGTATGAAACTGCCAAGCGTCACTATGC 421
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 389 GAGAGGAATTACTATTGCCACGGCTCATGTGGAGTATGAAACTGCAAAGCGTCACTATGC 448
Query 422 TCATGTGGATTGCCCTGGGCACGCTGATTATGTTAAAAATATGATTACTGGAGCGGCACA 481
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || ||
Sbjct 449 TCATGTGGATTGCCCTGGACACGCAGATTATGTTAAAAATATGATTACTGGAGCTGCGCA 508
Query 482 AATGGATGGTGGAATTCTTGTGGTTTCAGGACCAGATGGACCCATGCCGCAGACGAAGGA 541
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 509 AATGGATGGCGGAATTCTTGTGGTTTCAGGACCAGATGGACCCATGCCGCAGACAAAGGA 568
Query 542 ACATATACTACTGGCTCGCCAGGTTGGTGTTCCATCACTTGTGTGCTTCTTGAACAAAGT 601
|||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 569 ACATATTCTACTTGCACGCCAGGTTGGTGTTCCCTCACTTGTGTGCTTCTTGAACAAAGT 628
Query 602 TGATGTGGTGGATGATCCTGAGCTGTTGGAGCTTGTCGAGATGGAACTACGAGAACTCCT 661
||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||
Sbjct 629 TGATGTGGTGGATGACCCTGAGCTCTTGGAGCTTGTCGAGATGGAACTACGTGAGCTCCT 688
Query 662 CAGCTTCTACAAGTTTCCTGGGGATGATATTCCCATCATTCGAGGATCTGCTCTGTCCGC 721
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 689 CAGCTTCTACAAGTTTCCTGGGGATGATATTCCCATCATCCGAGGATCTGCTCTGTCCGC 748
Query 722 ATTACAGGGCACCAATGATGAAATTGGAAGGCAAGCTATATTAAAGCTAATGGATGCTGT 781
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 749 ATTACAGGGCACCAATGATGAAATTGGAAGGCAAGCTATATTAAAGCTGATGGATGCTGT 808
Query 782 TGATGAATACATACCTGACCCTGTTCGCGTGCTTGACAAGGCTTTCTTGATGCCAATTGA 841
||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 809 TGATGAATATATACCTGACCCTGTTCGCGTCCTTGACAAGCCTTTCTTGATGCCAATTGA 868
Query 842 AGATGTTTTCTCAATTCAAGGACGTGGAACTGTTGCAACCGGTCGTATTGAACAGGGAAC 901
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 869 AGATGTTTTCTCAATTCAAGGACGTGGAACTGTTGCAACCGGTCGTATCGAACAGGGAGT 928
Query 902 CATTAAAGTGGGTGAAGAAGTTGAGATATTGGGTTTACGTGAgggggg-gCTTCCACTGA 960
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 929 CATTAAAGTGGGTGAAGAAGTTGAGATATTGGGTTTACGTGAGGGGGGTG-TTCCACTGA 987
Query 961 AGTCGACTGTAACTGGGGTTGAGATGTTCAAGAAGATTTTGGATAATGGACAGGCTGGTG 1020
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 AATCGACTGTAACTGGGGTTGAGATGTTCAAGAAGATTTTGGATAATGGACAGGCTGGTG 1047
Query 1021 ACAATGTAGGACTTCTTCTGCGGGGGCTAAAGAGAGAAGACATTCAGCGTGGAATGGTGA 1080
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1048 ATAATGTAGGACTTCTTCTGCGTGGGCTAAAGAGAGAAGACATTCAGCGTGGAATGGTGA 1107
Query 1081 TTGCTAAGCCTGGTTCGTGCAAGACGTACAAGAAGTTTGAAGCAGAGATTTACGTGCTCA 1140
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1108 TTGCTAAGCCTGGTTCATGCAAGACATACAAGAAGTTTGAAGCAGAGATTTACGTGCTCA 1167
Query 1141 CAAAGGACGAAGGAGGACGTCACACTGCTTTTTTCTCCAACTACAGGCCTCAGTTTTACT 1200
||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1168 CAAAGGATGAAGGTGGACGTCACACTGCATTTTTCTCTAACTACAGGCCTCAGTTTTACT 1227
Query 1201 TGAGGACTGCAGATATCACTGGAAAAGTAGAACTACCTGAGAATGTGAAGATGGTCATGC 1260
|||||||||||||||||||||| ||||| ||| |||| || || ||||||||||| ||||
Sbjct 1228 TGAGGACTGCAGATATCACTGGCAAAGTGGAATTACCCGAAAACGTGAAGATGGTTATGC 1287
Query 1261 CCGGTGACAATGTAACTGCAGTTTTTGAGCTAATCATGCCTGTCCCACTCGAAACAGGGC 1320
| ||||||||||| || || ||||| ||| |||||||||||||||||||||||||||| |
Sbjct 1288 CTGGTGACAATGTCACAGCTGTTTTCGAGTTAATCATGCCTGTCCCACTCGAAACAGGTC 1347
Query 1321 AAAGATTTGCCTTGAGGGAAGGAGGTAGAACAGTTGGAGCTGGTGTTGTGTCAAAAGTGA 1380
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1348 AAAGATTTGCCTTAAGGGAAGGAGGTAGAACAGTTGGAGCTGGTGTTGTATCAAAAGTGA 1407
Query 1381 TGAGCTAAAGTACTCAAAAGCACATTCTTCTCCTTTGTTCTCTAGGAATCCATCAATTAT 1440
||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1408 TGACCTAAACTACTCAAAAGCACATTCTTCTCCTTCGTTCTCTAGGAATCCATCAATT-T 1466
Query 1441 -GAGAttttttttttt 1455
||||||||| |||||
Sbjct 1467 CGAGATTTTTCTTTTT 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71736578805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5