BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490273
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02860.1 | Symbols: | Phenazine biosynthesis PhzC/PhzF prot... 1655 0.0
AT4G02850.1 | Symbols: | phenazine biosynthesis PhzC/PhzF fami... 228 1e-58
> AT4G02860.1 | Symbols: | Phenazine biosynthesis PhzC/PhzF protein
| chr4:1268713-1270525 REVERSE LENGTH=1198
Length=1198
Score = 1655 bits (896), Expect = 0.0
Identities = 1061/1137 (93%), Gaps = 26/1137 (2%)
Strand=Plus/Plus
Query 1 ATGGGGAAGAAGAAAACTGTGAAATACTTTGTGGTGGATGCTTTCACTGATTCGGCTTTC 60
||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct 75 ATGGGGAAGAAGAAAGGTGTCAAGTACTTTGTGGTGGATGCTTTCACTGATTCGGCTTTC 134
Query 61 AAAGGGAATCCAGCTGCTGTTTGTTTTCTCAACGACGACGACAACAGCGAGAGAGACGAC 120
|||||||||||||||||||||||||||||| | ||||||| | | ||||||||| |||
Sbjct 135 AAAGGGAATCCAGCTGCTGTTTGTTTTCTC-A--ACGACGA-TA-A-CGAGAGAGATGAC 188
Query 121 ACGTGGCTTCAGTCTCTAGCCGCCGAATTCAACATCTCCGAAACTTGTTTTCTTACTCCC 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 189 ACGTGGCTTCAGTCTCTCGCCGCCGAATTCAACATCTCCGAAACTTGTTTTCTTATTCCC 248
Query 181 ATCACTGGTTTCGAAGCTCGCTTCAGTCTCCGGTGGTTTACCCCTTTAGCTGAGGTGGAT 240
|||||||||||| |||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 249 ATCACTGGTTTCCAAGCTCGCTTCAGTCTACGCTGGTTTACCCCTTTAGCCGAGGTGGAT 308
Query 241 CTTTGTGGTCATGCAACTTTGGCATCTGCTCATTGTCTCTTCTCAAATGGTTTGGTTGAT 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 CTCTGTGGTCATGCAACTTTGGCATCTGCTCATTGTCTCTTCTCAAATGGTTTGGTTGAT 368
Query 301 TCAGACATGGTTGAGTTTGTCACAAGATCAGGGATTCTTACAGCTAAGCGTGTTTCAGAT 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 369 TCAGACATGGTTGAGTTTGTCACAAGATCAGGGATTCTTACAGCCAAGCGTGTTTCAGAT 428
Query 361 ACTTCAGAGCTCAATGATGGTGAAGTGAAAGGAGGATCCTTTTTGATTGAGTTGAATTTC 420
||||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||
Sbjct 429 ACTTCAGAGCTCAGTGATGGTGAAGTGAAAGGAGGAACCTTTTTGATCGAATTGAATTTC 488
Query 421 CCTGTGGTTACAACTTGTGATATTAATTTCAGTGATGTCTCCTCTTCTATGATTACCAAG 480
||||||||||||||||||||| ||||| |||||||||| |||||||||||||| ||||||
Sbjct 489 CCTGTGGTTACAACTTGTGATGTTAATCTCAGTGATGTATCCTCTTCTATGATCACCAAG 548
Query 481 GCCTTGAACGGAGCTACCATTGTTGATATAAAAGCTACTGCGACAAACAACATCCTCGTT 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 549 GCCTTGAACGGAGCTACCATTGTTGATATAAAAGCTACTGCAACAAACAACATCCTCGTT 608
Query 541 GTGCTTCCATCTATGGAATCTGTCACTGAATTGCAACCAAGAATGGATGATATATTGAAA 600
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 GTGCTTCCATCTAAGGAATCTGTCACTGAATTGCAACCAAGAATGGATGATATATTGAAA 668
Query 601 TGCCCCTGCGATGGCATAATTGTGACAGCTGCTGGTTCTGCAGGATCGGCCTATGATTTC 660
|||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 669 TGCCCCTGTGATGGCATAATTGTGACAGCTGCTGGTTCTACAGGATCGTCCTATGATTTT 728
Query 661 TACAGTCGTTA-TTTCGCTCCTAAGTTCGGAGTTGATGAGGACCCTGTTTGTGGAAGTGC 719
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TACAGTCGGTACTTT-GCTCCTAAGTTCGGAGTTGATGAGGACCCTGTTTGTGGAAGTGC 787
Query 720 ACATTGTGCATTGGCACATTACTGGAGCCTCAAGATGAACAAATGTGATTTCCTAGCCTA 779
|||||||||||||||||||||||||||| |||||||||| || | ||||||| |||||||
Sbjct 788 ACATTGTGCATTGGCACATTACTGGAGCATCAAGATGAATAAGTTTGATTTCTTAGCCTA 847
Query 780 CCAAGCTTCGCGTAGGAGTGGAACAATTAGGATTCATCTAGACAAGGAGAAGCAGAGGGT 839
|||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 848 CCAAGCTTCGAGTAGGAGTGGAACGATAAGGATTCATCTAGACAAGGAGAAGCAGAGGGT 907
Query 840 TCTCCTGAGAGGCAAATCCGTGACTGTGATGGAAGGCCATGTCTTGGTTTGATCTGAAAT 899
|||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||
Sbjct 908 TCTCCTGAGAGGCAAAGCCGTTACTGTGATGGAAGGCCATGTCTTGGTCTGATCTGAAAT 967
Query 900 GATATACTGTGTTGATTGACTTCTGCTACAAAACAAGCTCCTTCCTACAATGGAATAACA 959
|||||||||||||| | |||||||||||||||||||||| || | || |||||||
Sbjct 968 TATATACTGTGTTGA---A-TTCTGCTACAAAACAAGCTCCTA--TA-A-TG-AATAACA 1018
Query 960 ATAAATTTACTATATTCAAAACAAAATAGTGTCAGCTGACTGATCCCACCTTGCATGAGG 1019
|| |||||||| | |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1019 ATGAATTTACTCTTTTCAAAACAAAATAGTGTCAGCTGACTGATCC-ACCTTACATGAGG 1077
Query 1020 TGTGGTA-CTCGTAGGAGCCACTGATAGGATATGTCTATGTTTACTGACCATGTGTGTTC 1078
|||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1078 TGTGGTCGCTCGTAGGAGCCACTGATAGGATATGTCCATGTTTTCTGACCATGTGTGTTC 1137
Query 1079 ATTTGTGAATGACTCATATGATCCAACAGTTCTCTTTCACTCACAGACAATTCATTT 1135
|||| |||||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 1138 ATTT-TGAATGACTC-T-----CCAACAGTTCTCTTTCACTCACAGACAATACATTT 1187
> AT4G02850.1 | Symbols: | phenazine biosynthesis PhzC/PhzF family
protein | chr4:1266463-1268612 REVERSE LENGTH=1036
Length=1036
Score = 228 bits (123), Expect = 1e-58
Identities = 298/379 (79%), Gaps = 25/379 (7%)
Strand=Plus/Plus
Query 528 CAACATCCTCGTTGTGCTTCCATCTAT-GGAATCTGTCACTGAATTGCAACCAAGAATGG 586
||| ||| ||||||||||| ||||| | ||||||||||| |||||| || |||||| |||
Sbjct 602 CAA-ATCATCGTTGTGCTTTCATCT-TGGGAATCTGTCATTGAATTTCAGCCAAGAGTGG 659
Query 587 ATGATATATTGAAATGCCCCT-GCGATG-GCATAATTGTGACAGCTGCTGGTTCTGC-AG 643
||||||| ||||||| |||| || | | | || ||||| || ||||||| | || | ||
Sbjct 660 ATGATATCGTGAAATG-CCCTGGCAAAGTG-ATGATTGTTACCGCTGCTGCTCCT-CAAG 716
Query 644 GATCGGCC-TATGATTTCTACAGTCG-TTATTTCGCTCCTAAGTTCGGAG-TTGATGAGG 700
|||| || | ||| |||| |||||| | ||| |||||||| | || | | ||||||
Sbjct 717 GATC-TCCTTTTGACTTCTGCAGTCGACTCTTT-GCTCCTAAACTAGG-GCTCAATGAGG 773
Query 701 ACCCTGTTTGTGGAAGTGCACATTGTGCATTGGCACATTACTGGAGCCTCAAGATGAACA 760
|| |||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 774 ACTCTGTATGTGGAAGTGCACATTGTTCATTAGCACATTACTGGAGCCTCAAGATGAACA 833
Query 761 AATGTGATTTCCTAGCCTAC-CAAGCTTCGCGTAGGAGTGGAACAATTA-GGATTCATCT 818
| ||||||||| | || | | ||||||| || ||||||||| | | || ||||| |
Sbjct 834 AGTGTGATTTCGTCGCTTTTGCG-GCTTCGCAAAGAAGTGGAACACTCAAGG-TTCAT-T 890
Query 819 A-GACAAGGAGAAGCAGAGGGTTCTC-CTGAGAGGCAAATCCGTGACTGTGATGGAAGGC 876
| || |||||||||||||| || || || | || ||| | |||||||| ||| |||||
Sbjct 891 ATGATAAGGAGAAGCAGAGAGT-CTTGCTTACCGGGAAAGCTGTGACTGTCATGAAAGGC 949
Query 877 -CATGTCTTGGTTTGATCT 894
| | |||| |||| ||||
Sbjct 950 TC-TATCTTAGTTTAATCT 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55672404405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5