BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490274
Length=613
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02840.2 | Symbols: | Small nuclear ribonucleoprotein famil... 725 0.0
> AT4G02840.2 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr4:1264627-1266459 FORWARD LENGTH=686
Length=686
Score = 725 bits (392), Expect = 0.0
Identities = 554/623 (89%), Gaps = 48/623 (8%)
Strand=Plus/Plus
Query 1 CTCCTCCCGCTCTTGCTTCTTGCCATTGCTGTTTCGAGCTCTCCTCAAAGCCCTAA---- 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 CTCCTCCCGCTCTTGCTTCTTGCCATTGCTGTTTCGAGCTCTCCTCAAAGCCCTAATTTT 73
Query 57 ---------TT-TTC-TTCTCTCACCATGAAGCTCGTTAGGTTTTTGATGAAATTGAACA 105
|| ||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 74 CTCCTCTTCTTCTTCATTCTCTCACCATGAAGCTCGTCAGGTTTTTGATGAAATTGAACA 133
Query 106 ACGAAACAGTTTCAATTGAGCTCAAGAACGGAACCATTGTTCATGGAACCATTAC--A-G 162
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | |
Sbjct 134 ACGAAACAGTTTCAATCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTGATG 193
Query 163 -GTG---TAGATGTTA---G--T--A--TG-A-AC---A-C-T---CA-T--TT-AAAAG 195
|| ||||| ||| | | | || | | | | | || | || |||||
Sbjct 194 AGTACACTAGATTTTACTTGAATCGAGGTGTAGATGTTAGCATGAACACTCATTTAAAAG 253
Query 196 CTGTGAAACTCACTTTGAAAGGGAAGAATCCAGTTACATTAGACCACCTAAGTGTCAGGG 255
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 254 CTGTGAAACTCACTCTGAAAGGGAAGAATCCAGTTACATTAGACCACTTAAGTGTCAGGG 313
Query 256 GAAACAACATTCGCTATTATATTCTTCCAGACAGTTTGAATCTCGAGACTTTGCTGGTTG 315
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 314 GAAACAACATTCGCTATTATATTCTTCCGGACAGTTTGAATCTGGAGACTTTGCTGGTTG 373
Query 316 AAGACACTCCAAGAATCAAGCCCAAAAAGCCAACTGCAGGTAAGATTCCACCAGGTCGTG 375
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
Sbjct 374 AAGACACTCCAAGAATCAAACCCAAAAAGCCAACTGCAGGTAAGATTCCAGCAGGTCGGG 433
Query 376 GACGTGGTCGTGGAAGAGGTCGTGGACGTGGACGTGGTGGTCGCTAAGCATTTTGCAGTG 435
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 434 GACGTGGTCGTGGAAGAGGTCGTGGACGTGGCCGTGGTGGTCGTTAAGCATTTTGCAGTA 493
Query 436 ATCAAAAG-CTTGGTCCTTTTTGTTTTGTAACAGCAGGATTGTAAAAGATCTATCTTGTA 494
|||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 494 ATCAAAAGTCT-GGTCCTTTTTGGTTTGTAACAGCAGGATTGTAAAAGATCTATCTTGTA 552
Query 495 GTGAGATTTGGTGTCACGAAGACAAATCCTTGTTATCTCTT-AAGTTTTCATGATTTTGA 553
||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| |||||
Sbjct 553 GTGAGATTTGGTGTCACTAAGACAAATTCTTGTTATCTCTTTAAGTTTTCATGAATTTGA 612
Query 554 GATTTGATACGTTATTGCCAAAC 576
||||||| |||||||||||||||
Sbjct 613 GATTTGAAACGTTATTGCCAAAC 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29537678436
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5