BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490275
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02830.1 | Symbols: | unknown protein; Has 74 Blast hits to... 990 0.0
> AT4G02830.1 | Symbols: | unknown protein; Has 74 Blast hits
to 74 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:1262315-1264088 FORWARD
LENGTH=843
Length=843
Score = 990 bits (536), Expect = 0.0
Identities = 649/701 (93%), Gaps = 17/701 (2%)
Strand=Plus/Plus
Query 29 TTCTTCTTCTAAGATTGATTCAAAGTGTTTCATAtttttgaaattttaattttctttttG 88
|||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||||||||
Sbjct 62 TTCTTCTTCTAAGATTAATTCAAAGTGTTTAATACTTTTGAAATTTTAAGTTTCTTTTTG 121
Query 89 GTCAGTTTCAAATGGGTGACATCATCGGTCACAAGGATAGGCAAATATGGTCA-CC-CTC 146
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 122 GTCAGTTTCAAATGGGTGACATCATCGGTCACAAGGATAGGCAAATATGGCCACCCTCTC 181
Query 147 -TCATGTTCTTCAAGATCCATTGTTTGATCATTCCAACAAACATCAGTTGCAGAAATATG 205
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 ATCATGTTCTTCAAGATCCATTGTTTGATCATTCCAACAAACATCAGTTGCAGAAATATG 241
Query 206 TCAAGAACCACCACCACCATGGCAGCGGTGAATTCCGTCGGCCCGGTGCACCTCCTCTCA 265
||||||||||||| ||||| |||| ||||||||| ||||||||||| ||||||||||| |
Sbjct 242 TCAAGAACCACCATCACCACGGCAACGGTGAATTTCGTCGGCCCGGGGCACCTCCTCTTA 301
Query 266 GGCAAACTTTTCCTTTGAACTATAATACAAGAAAAAAGCACCAAAGCAATTGGCAAAGGA 325
| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 302 GACAAACATTTCCTTTGAACTATAATACAAGACAAAAGCACCAAAGCAATTGGCAAAGGA 361
Query 326 GTAAAGGAGATCAGGACCGTATGCAAGCATTTTTCTTGGTGT-CGCCAGGCCGTACAACT 384
|||||||||| ||| ||||||||||||||||||||||| | | || ||||||||||||
Sbjct 362 GTAAAGGAGA---GGATCGTATGCAAGCATTTTTCTTGGT-TACACCGGGCCGTACAACT 417
Query 385 TCTGGCACCGGAGTTTTTCTTCCGGCCACCGCCTCTCATCCGCCCACCAAAAAACCAGCT 444
||||||||||||||||||||||| ||||| || |||||||| |||||||||||| |||||
Sbjct 418 TCTGGCACCGGAGTTTTTCTTCCAGCCACGGCTTCTCATCCACCCACCAAAAAAACAGCT 477
Query 445 TGCTCGCCGGTGCTTCTCCCGACGCGTGTAGTTCAAGCACTCAATCTTAACATTCACAAC 504
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 478 TGCTCACCGGTGCTTCTCCCGACTCGTGTAGTTCAAGCACTCAATCTTAACATTCACAAC 537
Query 505 AACGGTATCCATATTTCTCCTCGTCCAGAAATTCGAGAAAACGATTCGAAGAAGAAGAAC 564
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
Sbjct 538 AACGGTATCCATATTTCTCCTCGTCCAGAAATTAGAGAAAATGATTCGAAGAAGAAGAGC 597
Query 565 GAAATGTTGGCAACA-C-C-TATGAACATTGAAGTAGAAAATC-TGATTGATTCGCCGGA 620
||||||||||||||| | | ||| || ||||||| |||||||| | ||||||||||||||
Sbjct 598 GAAATGTTGGCAACAACACCTATCAAGATTGAAGCAGAAAATCCT-ATTGATTCGCCGGA 656
Query 621 GAAACTTCTCCCCGAGGAATGGATCTATTGATGACCCGACCATTAAATGTGGAAAAGTAG 680
|||||||||||||||||||||||| |||||||||||| ||||||| | |||||||||||
Sbjct 657 GAAACTTCTCCCCGAGGAATGGATTTATTGATGACCCAACCATTAG-TATGGAAAAGTAG 715
Query 681 AATCAAATAAAATAAAATGAAAGATTATTTTGTGTTGTATG 721
|||||||||||||||||||||||||| || |||||| |||
Sbjct 716 AATCAAATAAAATAAAATGAAAGATTCTT--GTGTTG-ATG 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36017883399
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5