BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490276
Length=1975
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02820.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2693 0.0
> AT4G02820.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr4:1258568-1260665 FORWARD LENGTH=2012
Length=2012
Score = 2693 bits (1458), Expect = 0.0
Identities = 1835/2012 (91%), Gaps = 45/2012 (2%)
Strand=Plus/Plus
Query 2 AACTAAAATGAATAAAAACATGTTGCTTCGCTCTGCTCGGCCAACCCTAGCCTCCATTTG 61
||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 7 AACAAAAATGAATAAAAACATGTTGGTTCGCTCTGCCCGGCCAACCCTAGCCTCCATTCA 66
Query 62 CCGCCTTTTCT---CCGCCGCCGCCGCGACGGTAGACACGACGGCGGAAGCAGCGGTGAA 118
||||||||||| |||||||||||||||| || |||||| || ||| | | | ||||||
Sbjct 67 CCGCCTTTTCTCCGCCGCCGCCGCCGCGACTGTGGACACGGCGACGGCACCCGTGGTGAA 126
Query 119 GACTCGCAGCGGAGGTGG---AGGAGGAG---CGACCAATAGAAAAGAAACGGTAGTTGG 172
| ||||||||||||| || |||||||| || |||| | ||||||||||||||||||
Sbjct 127 GCCTCGCAGCGGAGGAGGAAAAGGAGGAGAATCGGCCAACAAAAAAGAAACGGTAGTTGG 186
Query 173 AGGAAGAGACACTCTAGGAGGGAGATTATTAAGCCTTGTGTATACTAAACGCAGCGCCGT 232
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 187 AGGAAGAGACACTCTAGGAGGGAGATTACTAAGCCTTGTGTATACGAAACGCAGCGCCGT 246
Query 233 TGTTACTATCCGGAAATGGAAAGAAGAAGGCCATTCCGTTCGCAAATACGAACTTAATCG 292
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 TGTTACTATCCGTAAATGGAAAGAAGAAGGCCATTCCGTTCGCAAATACGAACTTAATCG 306
Query 293 AATCGTTAGAGAGCTTCGTAAGATCAAACGCTATAAACACGCTCTTGAGATATGTGAATG 352
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TATCGTTAGAGAGCTTCGTAAGATCAAACGCTATAAACACGCTCTTGAGATATGTGAATG 366
Query 353 GATGGTTCTACAGGAAGATATAAAGTTGCAAGCTGGTGATTATGCTGTGCATTTGGATTT 412
||||||| ||||||||||||||||| | ||||| |||||||||||||| |||||||||||
Sbjct 367 GATGGTTGTACAGGAAGATATAAAGCTACAAGCAGGTGATTATGCTGTACATTTGGATTT 426
Query 413 GATTTCTAAAATCCGTGGTTTAAACAGCGCGGAGAAGTTTTTCGAAGATATGCCGGATCA 472
||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 427 GATATCTAAAATCCGTGGTTTAAACAGTGCTGAGAAGTTTTTCGAAGATATGCCAGATCA 486
Query 473 AATGCGAGGTCATGCTGCTTGTACATCACTTCTACATAGCTATGTGCAGAACAAGTTGTC 532
|||| ||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 487 AATGAGAGGTCATGCTGCGTGTACATCTCTTTTACATAGCTATGTGCAGAACAAGTTGTC 546
Query 533 TGACAAAGCTGAGGCTTTGTTTGAGAAAATGGGTGAATGTGGTTTCTTGAAGTCTTGTTT 592
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TGATAAAGCTGAGGCATTGTTTGAGAAAATGGGTGAATGTGGTTTCTTGAAGTCTTGTTT 606
Query 593 GCCTTACAATCATATGCTATCGATGTTTATATCGAAAGGCCAGTTTGAGAAAGTCTCGGT 652
|||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||| | ||
Sbjct 607 GCCTTACAATCATATGTTATCGATGTATATATCGAGAGGACAGTTTGAGAAAGTCCCTGT 666
Query 653 GTTGATTAAGGAATTGAAGATGAAAACATCGCCTGATATTGTTACTTATAATCTATGGCT 712
|||||||||||| |||||||| | |||||| ||||||||||||||||||||||| |||||
Sbjct 667 GTTGATTAAGGAGTTGAAGATTAGAACATCTCCTGATATTGTTACTTATAATCTCTGGCT 726
Query 713 GACTGCGTTTGCTTCGGGAAACGATGTTGAAGGTGCAGAAAAAGTTTATCTTAAGGCGAA 772
|||||||||||||| ||||| ||||| || ||||| || ||||||||||||||||||||
Sbjct 727 TACTGCGTTTGCTTCTGGAAATGATGTCGAGGGTGCGGAGAAAGTTTATCTTAAGGCGAA 786
Query 773 GGAAGCTAAGCTGAATCCGGACTGGGTGACTTATAGCGTGCTAACGAATTTGTATGCTAA 832
||||| ||| |||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct 787 GGAAGAGAAGTTGAATCCGGATTGGGTGACTTATAGTGTGTTAACGAATTTGTATGCTAA 846
Query 833 GACTGATAATCTCGAAAAGGCAAAACTTGCTTTGAAGGAGATGGAGAAGTTAGTTTCTAA 892
|||||||||| |||||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct 847 GACTGATAATGTCGAAAAGGCGAGACTTGCTTTGAAGGAGATGGAGAAGTTGGTTTCTAA 906
Query 893 GAAAAACCGGGTTGCTTATGCTTCTCTCATTAGTCTGCACGCGAACTTGGGCGACAAAGA 952
||| ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||
Sbjct 907 GAAGAACCGGGTTGCTTATGCTTCTCTTATTAGTCTGCATGCGAATTTGGGTGACAAAGA 966
Query 953 TGGAGTCAACTTAACTTGGAAGAAGGTTAAGTCGTCTTTCAAGAAAATGAATGATGCGGA 1012
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 967 TGGAGTGAACTTAACCTGGAAGAAGGTTAAGTCTTCTTTCAAGAAAATGAATGATGCGGA 1026
Query 1013 ATACCTTAGTATGATATCTGCAGTGGTGAAGCTTGGTGAATTCGAACAAGCCAAAGGTTT 1072
|| || |||||||||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct 1027 GTATCTCAGTATGATATCTGCGGTTGTGAAGCTTGGAGAGTTTGAACAAGCTAAAGGTTT 1086
Query 1073 GTATGACGAATGGGAATCTGTTTCTGGAACAGGAGATGCTAGAATCCCGAATCTAATCCT 1132
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1087 GTATGACGAATGGGAATCTGTTTCGGGAACAGGAGATGCTAGAATCCCGAATCTAATCCT 1146
Query 1133 TGCCGAGTACATGAACAGAGACGAGATTCGTCTAGGAGAGAAGTTCTACAAACGAATTGT 1192
||| ||||||||||||||||| ||| ||| ||||||||| ||||| ||| |||| |||||
Sbjct 1147 TGCTGAGTACATGAACAGAGATGAGGTTCTTCTAGGAGAAAAGTTTTACGAACGGATTGT 1206
Query 1193 GGAGAAAGGGATAAACCCTAGCTATTCTACATGGGAAATTCTCACATGGGCTTATTTGAA 1252
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 GGAGAAAGGGATAAACCCGAGCTATTCTACATGGGAAATTCTCACATGGGCTTATTTGAA 1266
Query 1253 GCGTAAAGATTTGGATAAAGTTTTGGATTGTTTTGAGAAAGCCATTGATTCTGTGAAGAA 1312
||||||||| |||| ||||| || |||||||||| |||||| |||||||||||||||||
Sbjct 1267 GCGTAAAGACATGGAGAAAGTATTAGATTGTTTTGGGAAAGCTATTGATTCTGTGAAGAA 1326
Query 1313 ATGGACTGTGAATGTAAGATTGGTTAAAGCAGTGTCCAAGGAACTCGAGGAACAAGGGAA 1372
||||||||||||||||||||||||||||| || || ||||||||| ||||||||||||||
Sbjct 1327 ATGGACTGTGAATGTAAGATTGGTTAAAGGAGCGTGCAAGGAACTTGAGGAACAAGGGAA 1386
Query 1373 TGTTAAAGGAGCAGAGAAGCTAATGATTCTACTACAAAAGGCTGGTCATGTGAACACTCA 1432
|||||||||||||||||||||||||| ||| || |||||||||||| |||||||||||||
Sbjct 1387 TGTTAAAGGAGCAGAGAAGCTAATGACTCTGCTCCAAAAGGCTGGTTATGTGAACACTCA 1446
Query 1433 GCTCTACAATTCCTTATTACGTACTTACGCTAAAGCTGGTGAAATGGCACTCATAGTTGA 1492
||||||||||||||| ||||| || ||||||||||| || ||||||||||||||||||||
Sbjct 1447 GCTCTACAATTCCTTGTTACGGACATACGCTAAAGCAGGGGAAATGGCACTCATAGTTGA 1506
Query 1493 AGAACGAATGGCAAAGGATAATGTAGAGTTAGATGAAGAGACTAAGGAGCTTATAAGACT 1552
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 AGAGCGAATGGCAAAGGATAATGTAGAGTTAGATGAAGAGACTAAGGAGCTTATAAGACT 1566
Query 1553 AACCAGTCGAATGCGTGTGACTGAAATCTCGTCCACCATTTCTTAGCATGAAAGCTGCAG 1612
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1567 AACCAGTCAAATGCGTGTGACTGAAATCTCGTCCACCATTTCTTAGTATGAAAGCTACAG 1626
Query 1613 AGTTAGTTTCGGACTGCAACTTCCACAAACCGAAGAATACAGAAACCGTTCTCTAAAGTC 1672
|||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1627 AGTTAGTTTCAGTCTGCAACTTCCACAAACCGAAGAATACAGAAACCGTTCTCTCAAGTC 1686
Query 1673 TGTACCAATGGAGATACTTGTCTTGAAGCAGTAACATTCGACTTGCTCTGACATTTAGAG 1732
|||||||| |||||||| |||||||||||||||||||| |||| ||| ||||||||||
Sbjct 1687 CGTACCAATCGAGATACTCGTCTTGAAGCAGTAACATTCCACTTACTCGGACATTTAGAC 1746
Query 1733 CTTGAGCAGAGTGTCCAAAGCTGC-AGAGGAATGAAGTTGCt-------t-t--tttttC 1781
|||||| ||||||| ||||||||| | ||||||||||||||| | | ||||||
Sbjct 1747 CTTGAGGAGAGTGTTCAAAGCTGCTA-AGGAATGAAGTTGCTACAAAGATATGATTTTTC 1805
Query 1782 -T-TTT---------CAGAATTTAGTATGATTAAAGTCTGTGCCAATTTTATATATTTGG 1830
| ||| ||||||||| |||||||||| ||| | |||||||| |||||
Sbjct 1806 CTGTTTTTTAATTTTCAGAATTTAATATGATTAAAATCTC-G----TTTTATATTTTTGG 1860
Query 1831 TTCTCTATA-T------GATGATGTCAAATGATCTTTGAGAGGTTGACTAACTGAAAAAC 1883
||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 TTCTCTATAGTTCTTCTGATGATGTCAAATGATCTTTGAGAGGTTGACTAACTGAAAAAC 1920
Query 1884 CTACTTCGACTCTTCTTGTTGGGTAGTTATGACTTGTGTAAAGCTTATGTAAGCTTTCAA 1943
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1921 CTACTTCGACTCTTCTTGTTGGGTAGTTATGACTTGTGTAA-GCTTATGTAAGCTTTCAA 1979
Query 1944 AGACTTGTGTCCAAAGTGGATTTGTTCACCTC 1975
||||||||||||||||||||||||||||||||
Sbjct 1980 AGACTTGTGTCCAAAGTGGATTTGTTCACCTC 2011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97840862205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5