BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490278
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02790.1 | Symbols: | GTP-binding family protein | chr4:124... 1927 0.0
> AT4G02790.1 | Symbols: | GTP-binding family protein | chr4:1247386-1249588
FORWARD LENGTH=1386
Length=1386
Score = 1927 bits (1043), Expect = 0.0
Identities = 1119/1156 (97%), Gaps = 4/1156 (0%)
Strand=Plus/Plus
Query 1 TTTCAGCGATGTTTGCACAGTTAGCGCCATCGCCGTCTCCTTCTCCGGCGAACCTAAGCC 60
||||||| |||||||| |||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 23 TTTCAGCCATGTTTGCTCAGTTAGCACCATCGCCGTCTCCTTCTCCGGCGAACGTTAGCC 82
Query 61 ACTTCGTTCACCGTCGCACCTTCCGTCAATGTACATACGCCGTCTCCGCTTCTCTTCCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 ACTTCGTTCACCGTCGCACCTTCCGTCAATGTACATACGCCGTCTCCGCTTCTCTTCCCA 142
Query 121 CTGCAAATTCCTCTCGTCCACCACCAATTCAGATTGTTGGAGGAAAAGATTTGAATTTGG 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 143 CTGCAAATTCCTCTCGTCCACCACCAATTCAGATTGTTGGAGGAAAGGATTTGAATTTGG 202
Query 181 ATGTTACACG-AAAGGATGATTCAATAGGGTTCAAATTAGAAGCAAATGAAGATGAAATT 239
|||||||||| |||| |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 203 ATGTTACACGGAAAG-ATGATTCAATTGGGTTCAAATTAGAGGCAAATGAAGATGAAATT 261
Query 240 GATTGGATGAATCTAGAATCTGATATTCGTCTATGGACTAGAGCATTACGTCCTGTTCAG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 GATTGGATGAATCTAGAATCTGATATTCGTCTATGGACTAGAGCATTACGTCCTGTTCAG 321
Query 300 TGGTATCCAGGACACATAATGAAAACTGAAAAGGAACTTAGGGAACAGCTTAAGCTAATG 359
||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 322 TGGTATCCAGGGCACATAATGAAAACTGAAAAGGAACTTAGGGAACAGCTTAAGTTGATG 381
Query 360 GATGTTGTGATTGAAGTCCGTGATGCTAGGATTCCTTTGTCGACCACTCATCCAAAGATG 419
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 382 GATGTTGTGATTGAAGTCCGTGATGCTAGGATTCCTTTATCGACCACTCATCCAAAGATG 441
Query 420 GATGCGTGGCTTGGGAATAGGAAACGGATATTGGTATTAAATAGAGAAGATATGATATCA 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 442 GATGCGTGGCTTGGGAATAGGAAACGGATATTGGTATTAAATAGAGAAGATATGATCTCG 501
Query 480 AATGATGATCGAAATGATTGGGCGAGATACTTTGCAAAGCAAGGAATAAAGGTCATTTTC 539
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 AACGATGATCGAAATGATTGGGCGAGATACTTTGCAAAGCAAGGAATAAAGGTCATTTTC 561
Query 540 ACTAATGGCAAACTTGGGATGGGAGCTATGAAGCTAGGTCGGTTAGCAAAAAGTTTAGCA 599
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 562 ACTAATGGCAAACTTGGGATGGGAGCTATGAAGCTAGGTCGGTTAGCCAAAAGTTTAGCA 621
Query 600 GGTGACGTAAATGGGAAACGGCGAGAAAAAGGACTTCTCCCTAGATCAGTTAGAGCTGGA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 GGTGACGTAAATGGGAAACGGCGAGAAAAAGGACTTCTCCCTAGATCAGTTAGAGCTGGA 681
Query 660 ATAATTGGATATCCTAATGTTGGGAAATCATCTTTGATCAATCGTCTATTGAAACGCAAA 719
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 682 ATAATTGGATACCCTAATGTTGGGAAATCATCTCTGATCAATCGTCTATTGAAACGAAAA 741
Query 720 ATTTGCGCAGCAGCTCCAAGACCAGGTGTAACTAGAGAAATGAAATGGGTCAAGCTTGGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 ATTTGCGCAGCAGCTCCAAGACCAGGTGTAACTAGAGAAATGAAATGGGTCAAGCTTGGG 801
Query 780 AAAGATCTTGATCTGTTAGACTCCCCTGGAATGCTTCCTATGCGTATCGACGATCAAGCA 839
|||||||||||||| ||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 802 AAAGATCTTGATCTCTTAGATTCACCTGGAATGCTTCCTATGCGTATCGATGATCAAGCA 861
Query 840 GCTGCTATAAAGCTTGCAATTTGCGATGACATTGGAGAGAAAGCTTATGACTTCACTGAT 899
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 862 GCTGCTATAAAGCTGGCAATTTGTGATGACATTGGAGAGAAAGCTTATGACTTCACTGAT 921
Query 900 GTTGCTGGAATCCTTGTGCAGATGTTAGCACGGATTCCAGAAGTAGGCGCAAAGGCTCTT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 GTTGCTGGAATCCTTGTGCAGATGTTAGCACGGATTCCAGAAGTAGGCGCAAAGGCTCTT 981
Query 960 TATAACCGATACAAGATCCAGCTAGAAGG-AGGCTGCGGTAAAAAATTTGTGAAGACGCT 1018
|| |||||||||||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct 982 TACAACCGATACAAGATCCAGCTAGAAGGCAA-CTGCGGGAAAAAATTTGTGAAGACGCT 1040
Query 1019 TGGTCTTAACTTGTTTGGTGGAGATAGTCATCAAGCTGCATTTAGAATACTGACGGATTT 1078
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1041 TGGTCTTAATTTGTTTGGTGGAGATAGTCATCAAGCTGCATTTAGAATACTAACGGATTT 1100
Query 1079 CCGCAAAGGCAAATTCGGGTATGTCTCGTTGGAGAGACCTCCACTGTGATCAAAATTAGT 1138
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1101 TCGCAAAGGCAAATTCGGGTATGTCTCGTTGGAGAGACCTCCACTGTGATCCAAGTTAGT 1160
Query 1139 AAGAGATATGCTCAAA 1154
||||||||||||||||
Sbjct 1161 AAGAGATATGCTCAAA 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59738648550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5