BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490280
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02770.1 | Symbols: PSAD-1 | photosystem I subunit D-1 | chr... 1131 0.0
> AT4G02770.1 | Symbols: PSAD-1 | photosystem I subunit D-1 | chr4:1229111-1229945
REVERSE LENGTH=835
Length=835
Score = 1131 bits (612), Expect = 0.0
Identities = 675/704 (96%), Gaps = 9/704 (1%)
Strand=Plus/Plus
Query 1 ATCTCTTTTCTCTTCTCATCAAAACATACC-ATCAAGCAATTTGCTCATTAGAGAACAAA 59
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 1 ATCTCTTTTCTCTTCTCATCAAAACATACCAAT-AAGCAATTTGCTCATTAGAGAACAGA 59
Query 60 GAAAGaaaaaaaCAATGGCAACTCAAGCCGCCGGGATCTTCAACTCCGCCATAACAACCG 119
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GAAA-AAAAAAACAATGGCAACTCAAGCCGCCGGGATCTTCAACTCCGCCATAACAACCG 118
Query 120 CCGCAACCTCCGGCGTCAAGAAACTCCACTTTTTCTCAACAACCCACCGTCCGAAATCCC 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 119 CCGCAACCTCCGGCGTCAAGAAACTCCACTTTTTCTCAACAACCCACCGTCCCAAATCCC 178
Query 180 TCTCCTTCACCAAAACCTCAATCCGCGCCGAGAAAACAGATTCCAAAGCCGC---TGC-- 234
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 179 TCTCCTTCACCAAAACCGCAATCCGCGCCGAGAAAACAGATTCCTCCGCCGCCGCTGCTG 238
Query 235 -AGCCCCCGCCGTGAAAGAAGCTCCCGTGGGATTCACGCCACCGCAGCTAGACCCAAACA 293
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CAGCCCCCGCCACGAAAGAAGCTCCCGTGGGATTCACGCCACCGCAGCTAGACCCAAACA 298
Query 294 CACCGTCTCCGATCTTCGCGGGAAGCACCGGTGGTCTTCTACGTAAAGCACAAGTGGAAG 353
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 299 CACCGTCTCCGATCTTCGCTGGAAGCACCGGTGGTCTTCTACGTAAAGCGCAAGTGGAAG 358
Query 354 AGTTCTACGTTATTACATGGAACTCACCAAAAGAACAGATCTTTGAGATGCCGACAGGAG 413
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 359 AGTTCTACGTTATCACGTGGAACTCACCGAAAGAACAGATCTTTGAGATGCCGACAGGAG 418
Query 414 GTGCAGCGATCATGAGAGAAGGTCCGAATCTGCTGAAGCTAGCGAGGAAAGAACAGTGTT 473
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 419 GAGCAGCGATCATGAGAGAAGGTCCGAATCTTCTGAAGCTAGCGAGGAAAGAGCAGTGTT 478
Query 474 TAGCTTTGGGGACAAGGCTTAGATCCAAGTACAAGATTACCTACCAGTTTTACAGAGTGT 533
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 479 TAGCTTTGGGGACAAGGCTTAGATCCAAGTACAAGATCACTTACCAGTTTTACAGAGTGT 538
Query 534 TTCCTAATGGTGAGGTTCAATATCTTCATCCTAAAGATGGTGTTTATCCAGAGAAGGCGA 593
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTCCTAACGGTGAGGTTCAATATCTTCATCCTAAAGATGGTGTTTATCCAGAGAAGGCGA 598
Query 594 ATCCAGGAAGAGAAGGTGTTGGTCTGAACATGAGATCTATTGGGAAAAATGTTAGTCCCA 653
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 599 ATCCAGGAAGAGAAGGTGTTGGTCTCAACATGAGATCTATTGGGAAAAATGTTAGTCCCA 658
Query 654 TTGAAGTTAAGTTTACTGGCAAACAAAGTTATGATTTGTAAGAT 697
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTGAAGTTAAGTTTACTGGCAAACAAAGTTATGATTTGTAAGAT 702
Score = 82.4 bits (44), Expect = 6e-15
Identities = 59/65 (91%), Gaps = 6/65 (9%)
Strand=Plus/Plus
Query 698 AAAACTATGTGCA--T-GTGATG---ATGACTATGTTTCATGTTAATTTTTAATGGATTT 751
||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||
Sbjct 722 AAAACTATGTGCATGTGGTGATGATTATGACTATGTTTCATGTTAATTTTTAATGGATTT 781
Query 752 TGTTT 756
|||||
Sbjct 782 TGTTT 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37173268780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5