BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490284
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02725.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 902 0.0
> AT4G02725.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast, membrane; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:1206004-1207436
FORWARD LENGTH=695
Length=695
Score = 902 bits (488), Expect = 0.0
Identities = 630/694 (91%), Gaps = 27/694 (4%)
Strand=Plus/Plus
Query 1 CACATTTTAATTAGAGTCAATTGAGTCCTCTATCCATCCTTATCGTCGTCTTCAGATGGC 60
||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 1 CACATTTTAATTAGAGTCAATCGAGTCCTC--T--ATCCTTATCGTCGTCTTCAGATGGC 56
Query 61 AAGTCTCTCCATCTCCGCCGTGTCTCTGTCGCCGTTTCGACCACAGACACAGACTCGTCT 120
|||||||||||| |||||||||||||||||||||||||| || || ||| ||| || |||
Sbjct 57 AAGTCTCTCCATGTCCGCCGTGTCTCTGTCGCCGTTTCGGCCTCAAACAGAGAATCTTCT 116
Query 121 TACAAAACTCAGTCCCCGAACGAATC-TCCACTCATTCAATCTCAAACCGATAAGGATTA 179
| ||||||||||| ||||||||| | | ||||| |||||||||||||| ||||||||||
Sbjct 117 TTCAAAACTCAGTTTCCGAACGAA-CTTACACTCGTTCAATCTCAAACCAATAAGGATTA 175
Query 180 ACACGAAAATTAGAAGTTTGGGTGGGAATCGGAGAGAGCCGAAGGATTCGAGATTCAGT- 238
|||||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 176 GTACGAAAGTTAGAAGTTTTGGTGGGAATCGGAGAGAGCCGAAGGATTCAAGATT-TGTC 234
Query 239 GATGAAAATGGCGTAGTTGATGACATGGAAGGTTTCTTAGACAATCTCTCTCTCGAATAC 298
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GATGAAAAAGGCGTAGTTGATGACATGGAAGGTTTCTTAGACAATCTCTCTCTCGAATAC 294
Query 299 GACTCCGTTTGGGACACTAAACCCTCTTGGTGTCAGCCATGGACGATAATGTTAACGGGT 358
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GACTCTGTTTGGGACACTAAACCCTCTTGGTGTCAGCCATGGACGATAATGTTAACGGGT 354
Query 359 TTATCAATAGTGGCATGTAGCTGGGTAATACTACATTCGGTCATAGTTTCATCGCTTGCG 418
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 355 CTATCAATAGTGGCATGTAGCTGGGTAATACTACACTCGGTCATAGTTTCATCGCTTGCG 414
Query 419 GTTGGTGTAATTGGCGCTTGGTGGTACATTTTCCTTTATAGCTACCCAAAGTCGTATTCA 478
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 415 GTTGGTGTAATTGGTGCTTGGTGGTACATATTCCTTTATAGCTACCCAAAGTCGTATTCA 474
Query 479 GAAATGATTGCTGAGAGAAGGAAAAGAGTAGCTGATGGTTTTGAAGATATTTACGGCAAA 538
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 475 GAAATGATTGCTGAAAGAAGGAAACGAGTAGCTGATGGTTTTGAAGATATTTACGGCAAA 534
Query 539 AACAAGACTTCATAGGATCTTCTCAATCCTCGAAATTACATTTGTTGCTTGCATAAATCT 598
|||||| |||||||||||||||||||| || |||||||||| ||| |||||||||||||
Sbjct 535 AACAAGCCTTCATAGGATCTTCTCAATGTTCAAAATTACATTCGTTTCTTGCATAAATCT 594
Query 599 T-------GT-GT----ATAATA-A-CAATCATCTATGGATTTATGATCTCAATTTCATT 644
| || || |||||| | | ||||||||||||||||| ||||||||||||
Sbjct 595 TCCCTTCTGTTGTGTGTATAATATAACCATCATCTATGGATTTAT---CTCAATTTCATT 651
Query 645 CACAGATGTGTGGATACA-AAGCTCTTGATTTCA 677
||||||||| |||||||| || |||||||||||
Sbjct 652 CACAGATGTTTGGATACATAAA-TCTTGATTTCA 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32853132138
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5