BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490285
Length=1330
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1749 0.0
> AT4G02720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14
growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown
function DUF926 (InterPro:IPR009269); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:1204303-1205866
REVERSE LENGTH=1564
Length=1564
Score = 1749 bits (947), Expect = 0.0
Identities = 1214/1332 (91%), Gaps = 61/1332 (5%)
Strand=Plus/Plus
Query 1 GTCGTCGTCGGAGTGAATTAGGGATTCGAGAATGACGATGAACTCGCTTCCGAGAAGATT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 23 GTCGTCGTCGGAGTGAATTAGGGATTCGAGAATGACGATGAACTCGCTTCCGAGGAGATT 82
Query 61 TGGGAAGAATCATGGCTATCTT-GATCGAGATTATCGTAACGGAAGGA-GATCTGGTTCA 118
||||||||||||||||||| || |||||||||||||| ||||||| || |||||||||||
Sbjct 83 TGGGAAGAATCATGGCTAT-TTGGATCGAGATTATCGAAACGGAA-GACGATCTGGTTCA 140
Query 119 GATTCCGATGAAGAATTAAAGGGATTGAGTCACGAGGAATATAGGAGGCAGAAACGGCTT 178
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 141 GATTCCGATGAAGAATTGAAGGGATTGAGTCACGAAGAGTATAGGAGGCAGAAACGGCTT 200
Query 179 AAGATGAGGAAATCGGCCAAGTTCTGTTTTTGGGAGAACACACCGAGTCCACCTAGAGAT 238
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 201 AAGATGAGGAAATCAGCCAAGTTCTGCTTTTGGGAGAACACACCGAGTCCACCTAGAGAT 260
Query 239 CAGAACGAGGATTCCGATGAGAACGTCGACGAGATTCTGGACAAGAACGGCGGCGAAAGA 298
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 261 CAGAACGAGGATTCCGATGAGAACGCCGACGAGATTCAGGACAAGAACGGCGGCGAAAGA 320
Query 299 GATAATAATTCGAGAGGGAAAGAAAGGAAAGGTAAATCTGATTCTGGGAAGTCAGATTCG 358
||| ||||||||| ||||||||||||||||||| || | ||| | | | |||
Sbjct 321 GATGATAATTCGAAAGGGAAAGAAAGGAAAGGT-AA----A-TCT--G-A--C----TCG 365
Query 359 GAATCTGAATCTGATGGTTTGAGATCTAGGAAGAGGAAGAGTAAGAGCTCTAGGTCTAAG 418
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 366 GAATCTGAATCTGATGGTTTGAGATCTAGGAAGAGGAAGAGTAAGAGCTCGAGGTCTAAG 425
Query 419 CGCAGGCGAAGGAGATCTTATGGTAGCGATAGTGAATCCg-a---a--gagagtgattcg 472
|||||| ||| ||||||||||| |||||||||||||||| | | ||||||||||||
Sbjct 426 CGCAGGAGAAAGAGATCTTATGACAGCGATAGTGAATCCGAAGGGAGTGAGAGTGATTCG 485
Query 473 gaagaggaagataggagacgaagaaggaagag---ttct-a-a-gaagaaga--a-aagt 523
||||||||||||||||||||||| |||||||| |||| | | |||||||| | |||
Sbjct 486 GAAGAGGAAGATAGGAGACGAAGGAGGAAGAGTTCTTCTAAGAGGAAGAAGAGTAGAAGC 545
Query 524 a---gaag---taggaaaaagcgaagtcatta-tagaaagaCGAGATACAGTGACTCTGA 576
| | || |||||||||||||||||| || |||||||||| |||||||||||||||
Sbjct 546 AGCCGTAGTTTTAGGAAAAAGCGAAGTCA-TAGGAGAAAGACGAAATACAGTGACTCTGA 604
Query 577 TGAGAGCAGCGATGGAGATAGTAAAGCTGAGGAATCTGAGATTAGTGCTTCTTCGTCTGG 636
|||||||||||||| ||||||| || | | |||||||||||||||||||||||||
Sbjct 605 TGAGAGCAGCGATGAAGATAGT-AA----A-G---CTGAGATTAGTGCTTCTTCGTCTGG 655
Query 637 GGA-G--GAAGATACCAAGTCAAAGAGCAAGAGGCGGAAGAAATCTTCGGGTTCTAGCTC 693
||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 656 GGAGGAAGAAGATACCAAGTCAAAGAGCAAGAGGCGGAAGAAATCTTCGGATTCTAGTTC 715
Query 694 GAAACGAAGCAAGGTAAAGAAAACGAAGTCAGAGACTGGA-AGCGATGGTA-TAGAGGAG 751
||||||||||||| | |||| |||||||||| || | || |||||||||| | |||||
Sbjct 716 AAAACGAAGCAAGGGAGAGAAGACGAAGTCAGGGAGT-GACAGCGATGGTACT-GAGGA- 772
Query 752 GATGATTCGAAGATGCAAGTAGAAGAAACGGTGAAGAACACTGAGCTTGAACTTGATGAA 811
| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 773 -A-GATTCGAAGATGCAAGTAGACGAAACGGTGAAGAACACTGAGCTAGAACTTGATGAA 830
Query 812 GAGGAGTTGAAGAAGTTCAAAGAGATGATTGAATTAAAGAAGAAATCTTCAGCTGTTGAT 871
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GAAGAGTTGAAGAAGTTCAAAGAGATGATTGAATTAAAGAAGAAATCTTCAGCTGTTGAT 890
Query 872 GATGAAGAAGAAGAAGCTGATGTTGGTCCAATGCCATTACCTAAAGCTGAAGGTCACATC 931
|| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 GAAGAGGAAGAAGAAGGTGATGTTGGTCCAATGCCATTACCTAAAGCTGAAGGTCACATC 950
Query 932 AGTTACGGTGGTGCTTTAAGGCCTGGTGAAGGAGATGCCATAGCACAGTATGTTCAACAA 991
||||| |||||||||||||| || ||||||||||| ||||| |||||||||||||| |||
Sbjct 951 AGTTATGGTGGTGCTTTAAGACCCGGTGAAGGAGACGCCATTGCACAGTATGTTCAGCAA 1010
Query 992 GGTAAACGTATTCCTCGTAGAGGAGAAGTGGGTCTTAATGCTGAAGAGATTCAGAAGTTT 1051
||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1011 GGTAAACGTATCCCACGTAGAGGAGAAGTGGGTCTTAACGCTGAAGAGATTCAGAAGTTT 1070
Query 1052 GAGGATCTTGGTTATGTGATGAGTGGAAGTAGGCATCAAAGGATGAATGCTATTCGTATT 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GAGGATCTTGGTTATGTGATGAGTGGAAGTAGGCATCAAAGGATGAATGCTATTCGTATT 1130
Query 1112 AGAAAGGAAAACCAGGTTTACAGTGCTGAAGACAAACGAGCATTGGCCATGTTTAACTAC 1171
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1131 AGAAAAGAAAACCAGGTTTACAGTGCTGAAGACAAACGGGCATTGGCCATGTTTAACTAC 1190
Query 1172 GAGGAGAAGGCCAAGCGCGAGGCTAAGGTTATGTCTGATCTGCAACGGCTTGTGCAGCGC 1231
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1191 GAGGAGAAGGCGAAGCGCGAGGCTAAGGTTATGTCTGATCTGCAGCGGCTTGTGCAGCGC 1250
Query 1232 CATATGGGAGAAGAAGTAGGGCCTAATCATGACCCTTTTGGTGCTACAAAGACTGATGAA 1291
|||||||||||||| || ||||| |||||||||||||| |||||| ||||||||| |||
Sbjct 1251 CATATGGGAGAAGAGGTGGGGCCAAATCATGACCCTTTCGGTGCTGGAAAGACTGAAGAA 1310
Query 1292 GCTGATGATTGA 1303
| ||||||||||
Sbjct 1311 GATGATGATTGA 1322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65461510680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5