BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490289
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02690.1 | Symbols: | Bax inhibitor-1 family protein | chr4... 1393 0.0
AT4G15470.1 | Symbols: | Bax inhibitor-1 family protein | chr4... 76.8 4e-13
> AT4G02690.1 | Symbols: | Bax inhibitor-1 family protein | chr4:1185751-1187816
FORWARD LENGTH=1301
Length=1301
Score = 1393 bits (754), Expect = 0.0
Identities = 933/1014 (92%), Gaps = 34/1014 (3%)
Strand=Plus/Plus
Query 39 AATAATGTATCAGTGGAACTTACCGTATCGGAAAGATGACGTGGAAACAGGTTTTAGCTC 98
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 269 AATAATGTATCAGTGGAACTTACCGTACCGGAAAGATGACGTGGAAACAGGCGTTAGCTC 328
Query 99 AAGAAGGCC-TT--TATACCCAACGATGCTTGAAAATCCCGAGCTCCGGTGGGGATTTAT 155
||||||||| || |||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 329 AAGAAGGCCTTTACTATACCCAGCGATGCATGAAAATCCCGAGCTCCGGTGGGGATTTAT 388
Query 156 ACGCAAGGTTTACTCTATAATCGCCTTTCAGCTTCTAGCCACCGTCGCCGTCGCCGCCAC 215
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 389 ACGCAAGGTCTACTCTATAATCGCCTTTCAGCTTCTAGCCACCGTCGCTGTCGCTGCCAC 448
Query 216 GGTGGTCACGGTCCATCCAATCGCTCTGTTTTTCGCCACCACCGGACTTGGATTAGCTCT 275
||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 449 GGTGGTCACCGTCCGTCCAATCGCTCTGTTCTTCGCCACCACCGGACTTGGATTAGCTCT 508
Query 276 TTACATAGTCATCATCATCACGCCCT-TGTTAGTGTTGTGTCCGTTGTACTATTACCATC 334
||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 509 TTACATAGTCATCATCATCAC-ACCTCTCATAGTGTTGTGTCCGTTGTACTATTACCATC 567
Query 335 AGAAGCATCCGGTGAATTACTTGCTCTTGGGAATTTTCACTTTGGCTCTGGCTTTTGTTG 394
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 568 AGAAACATCCGGTGAATTACTTGCTCTTGGGGATTTTCACTTTGGCTCTGGCTTTTGTTG 627
Query 395 TTGGATTAACATGTGCCTTCACCAATGGGAAAGTGATTCTCGAGTCAGCGATCTTGACAT 454
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 628 TTGGATTAACATGTGCCTTCACCAATGGGAAAGTGATTCTCGAGTCAGTGATCTTGACAT 687
Query 455 CGGTTGTGGTGCTTTCCCTCACATTATACACCTTTTGGGCTGCTAGGAAAGGATATGACT 514
|||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 688 CGGTAGTGGTGCTTTCGCTCACATTATATACTTTTTGGGCTGCTAGGAAAGGATATGACT 747
Query 515 TTAATTTCCTTGGACCCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAA 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 TTAATTTCCTTGGACCCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAA 807
Query 575 TACAAATTCTGTTCCCATTAGGGCGGATATCGGTGATGATCTACGGTTGTTTGGTATCGA 634
|||||||| |||||||||||||| || |||| ||||||||||| ||||||||||||||||
Sbjct 808 TACAAATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTATCGA 867
Query 635 TAATATTCTGCGGATACATAGTCTATGATACAGACAATCTGATCAA-ACGACACACGTAT 693
|||||||||||||||||||||| || |||||||||||||||||||| | |||||||||||
Sbjct 868 TAATATTCTGCGGATACATAGTTTACGATACAGACAATCTGATCAAGA-GACACACGTAT 926
Query 694 GATGAGTATATTTGGGCAGCGGTTTCGCTCTACCTAGACATCATCAACCTCTTCTTGTAT 753
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 927 GATGAGTATATTTGGGCAGCGGTTTCACTCTACCTAGACATCATCAACCTCTTCTTGTAT 986
Query 754 CTTCTTACTGTACTT-AGAGCCTTACAGAGATGATGATTATGAGGATGAAGTATTTAGCT 812
||||||||||| || ||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 987 CTTCTTACTGTG-TTGAGAGCCTTACAGAGATGATGATTATTAGGATGAGGTATTTAGCT 1045
Query 813 TCTCTTGTCTCTT-AAAAATGTTTAAATAAGAAAATAAAATTGTACATTTTTGTGGTTA- 870
| || ||||||| |||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 1046 TATCG-GTCTCTTTAAAAATATGTAAATAAGAAAATAAAACTGTACATTTTTGTGGTTAC 1104
Query 871 A-T------GT----G--AGTGATTGTAGAGGGAACACAAAAACTGTGGATCATGTAATG 917
| | || | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1105 AGTTCACATGTTCATGTGAGTGATTGTAGAGGGAACACAGGAACTGTGGATCATGTAATA 1164
Query 918 ATT-ATAACGAAAATGCCAA--A-GT---ATGTGTGTAGTGTAGCTAAGGACATCACGAG 970
||| |||||||||||||||| | || ||||||||| ||| || || |||| ||||||
Sbjct 1165 ATTTATAACGAAAATGCCAAGGATGTGTCATGTGTGTAATGTCGCGAAAGACACCACGAG 1224
Query 971 AAGTGCAAGTCTTT-GTTTTT-CTCATAAGAAAAATGGGATAATTGAAACTTTT 1022
|||||||||||||| |||||| ||||||||||||| |||||||||||| |||||
Sbjct 1225 AAGTGCAAGTCTTTTGTTTTTTCTCATAAGAAAAAAGGGATAATTGAAGCTTTT 1278
> AT4G15470.1 | Symbols: | Bax inhibitor-1 family protein | chr4:8843567-8845810
FORWARD LENGTH=1170
Length=1170
Score = 76.8 bits (41), Expect = 4e-13
Identities = 90/114 (79%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 638 TATTCTGCGGATACATAGTCTATGATACAGACAATCTGATCAAACGACACACGTATGATG 697
|||||||||||||||||||||||||||| ||||| || ||||| || ||| ||||| |
Sbjct 717 TATTCTGCGGATACATAGTCTATGATACCGACAACCTCATCAAGCGTTTCACATATGACG 776
Query 698 AGTATATT-TGGGCAGCGGTTTCGCTCTACCTAGACATCATCAACCTCTTCTTG 750
| || || | | || | || | |||||| | |||||| |||| |||||||||
Sbjct 777 AATACATCCTAG-CATCAGTAGCTCTCTACTTGGACATCCTCAATCTCTTCTTG 829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50133678706
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5