BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490290
Length=3224
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02680.1 | Symbols: EOL1 | ETO1-like 1 | chr4:1181049-118493... 4726 0.0
> AT4G02680.1 | Symbols: EOL1 | ETO1-like 1 | chr4:1181049-1184930
REVERSE LENGTH=3422
Length=3422
Score = 4726 bits (2559), Expect = 0.0
Identities = 2826/2957 (96%), Gaps = 10/2957 (0%)
Strand=Plus/Plus
Query 251 CATAGAGAAGTGC-TTTAGCTTTAGGTGTTGGAAGATCTCATAATACCAAAGTTCAGAtt 309
||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 404 CATAGAGAAATGCTTTTAGCTTTAGGTGTTGTAAGATCTCATAATACCAAAGTTCAGA-- 461
Query 310 tttttGTTTGTATAAGATTCCATT-AGTTAACACATCTTCACTTAGTTTCTGGGCTGGGT 368
|||| |||||||| ||||||||| || || | ||||| |||||||||||||| ||||||
Sbjct 462 -TTTT-TTTGTATAGGATTCCATTAAG-TAGCCCATCTCCACTTAGTTTCTGGTCTGGGT 518
Query 369 AGTGTGAAATCGACAAGAAAATAGTGTTTTGATTATCCTCTGGCTATCCTGGAGATCTGG 428
|||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 519 AGTGTGTAACCGACAAGAAAATAGTGTTTTGACTATCCTCTGGCTATCCTGGAGATCTGG 578
Query 429 GATTTGTTTCATCTGTTATGTCAGATGAGGACTTTTTACCCATCTGATTCTTGTAAAGAA 488
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 579 GATTTGTTTCATCTGTTATGTCAGATGAGGACTTTTTACCCTTCTGATTCTTGTAAAGAA 638
Query 489 TCACAGCTCAATTCCTTGAATCCACAGTCATGGCTTCAAGTTGAGAGAGGGAAGCTATCT 548
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 TCACAACTCGATTCCTTGAATCCACAGTCATGGCTTCAAGTTGAGAGAGGGAAGCTATCT 698
Query 549 TCCTCTGCCTCTTCATCTGCTCCACTATGCAGAGAATCGTTTATCAAAGTTCCTC-AGCC 607
|||||||| ||||||||||||||||| || |||||||| |||||||||||||| | ||||
Sbjct 699 TCCTCTGCTTCTTCATCTGCTCCACTGTGTAGAGAATCATTTATCAAAGTTCC-CGAGCC 757
Query 608 GCAGATACTGCCGCATTATAAACCTGTCAACTACGTAGAAGTTCTAGCTCAGATTCACGA 667
|||||||||||||||||||| ||| || |||| ||||||||||||||||||||||| ||
Sbjct 758 TCAGATACTGCCGCATTATAAGCCTCTCGACTATGTAGAAGTTCTAGCTCAGATTCATGA 817
Query 668 AGAACTCGAGACTTGTCCTTTGCAGGAGAGATCGATTCTGTATTTATTGCAGTATCAAGT 727
||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 818 AGAACTCGACACTTGCCCTTTGCAGGAGAGATCGATTCTGTATTTGTTGCAGTATCAAGT 877
Query 728 GTTTAGAGGTCTTGGAGAGACCAAACTTAGACGGAGAAGCCTTCAGTCAGCTTGGCAAGA 787
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 878 GTTTAGAGGTCTTGGAGAGACCAAACTTAGACGGAGAAGCCTTCAATCAGCTTGGCAAGA 937
Query 788 GGCTACTACTGTACATGAGAAAGTTGTGTTTGGGTCTTGGTTGAGGTATGAGAAACAAGG 847
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 938 GGCTACTACTGTCCATGAGAAAGTTGTGTTTGGATCTTGGTTGAGGTATGAGAAACAAGG 997
Query 848 AGAAGAAGTTATCACCGATTTGCTTTCTTCTTGTGGTAAATTTTCTGAAGAATTTGTGCC 907
||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 998 AGAAGAAGTTATCACAGATTTGCTTTCCTCTTGTGGTAAATATTCTGAAGAATTTGTGCC 1057
Query 908 GCTGGATATTGCATCCTATTTCCCAGCTATTACTGCTTCTTCCCCTGAGGCAGCATCTGT 967
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1058 ACTAGATATTGCATCCTATTTCCCAGCTACTACTGCTTCTTCCCCTGAGGCAGCATCTGT 1117
Query 968 GAAGACCAAGCGCAGTGTATCGAAAAATGTTGTGTTTAAGATAGGAGAAGATAAGATAGC 1027
|||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1118 GAAGACGAACCGCAGTGTATCTAAAAATGTTGTGTTTAAGATAGGAGAAGAGAAGATAGC 1177
Query 1028 TTGCCAGAGGCAAAAAATTGCCAGTCTTTCAGCTCCATTTCATGCAATGCTTTATGGGAA 1087
|||||| |||| |||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 1178 TTGCCAAAGGCGGAAAATTGCGAGTCTTTCAGCTCCATTTCATGCTATGCTTTATGGTAA 1237
Query 1088 TTTCACGGAATCACTTCTTGATGAGATAGATATGTCAGAAAATCATGTATCCTCGTCAGC 1147
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1238 TTTCACGGAATCGCTTCTTGATGAGATAGATATGTCAGAAAACCATGTATCCTCATCAGC 1297
Query 1148 TATGCGGGTTGTTAGAGATTTCAGCGTTGTGGGTGTATTAATCGGAGTTTCCAAGAACCT 1207
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1298 TATGCGGGTTGTTAGAGATTTCAGCGTTGTTGGTGTACTAATCGGAGTTTCCAAGAACCT 1357
Query 1208 TCTTTTGGAAGTTTTAGTTTTCGCAAACAAGTTTTGCTGCGAGCGACTCAAAGATGCATG 1267
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1358 TCTTTTGGAAGTTTTAGTTTTCGCAAACAAGTTTTGCTGCGAGCGACTTAAAGATGCATG 1417
Query 1268 CGATAGAGAATTGGCATCTTTGATTTCTTCTATGGAATGTGCCATTGAGCTTATGGACTT 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 CGATAGAGAATTGGCATCTTTGATTTCTTCTATGGAATGTGCCATTGAGCTTATGGACTT 1477
Query 1328 TGCACTCGAAGAAAATTCCCCCATCCTAGCTACATCGTGTCTGCAAGTTTTTCTTTATGA 1387
|||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1478 TGCACTTGAAGAGAATTCCCCCATCCTAGCTTCATCGTGTCTGCAAGTTTTTCTTTATGA 1537
Query 1388 GATGCCCGATAGTTTGACTGATGAGCGTGTTGTCGAGGTTCTGACTCGAGTTAATAGATC 1447
|||||| |||||||||| ||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1538 GATGCCTGATAGTTTGAATGATGAGCGTGTTGTTGAGGTTTTGACTCGAGTTAATAGATC 1597
Query 1448 TCAAGTCTCAACCATGGCAGGAAAAGCTTCATTCTCCTTATACTCTTGTTTAAGTGAAGT 1507
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1598 TCAAGTCTCAACCATGGCAGGAAAAGCTCCATTCTCCTTATATTCTTGTTTAAGTGAAGT 1657
Query 1508 CTCGATGCGTATAGATCCTCGGTCTGACAGAACATTGGGTTTCTTGGAGAAACTAGTTGA 1567
||||||| |||||||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct 1658 CTCGATGTGTATAGATCCTCGGTCTGACAGAACACTCGGTTTCTTGGAGAAATTAGTTGA 1717
Query 1568 CTTTGCAGAAAATGACCGGCAACAAGTATTGGGGTTCCATCGGTTAGGATGTATGAGGCT 1627
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1718 CTTTGCAGAAAATGACCGGCAACAAGTATTGGGGTTCCATCGGTTAGGTTGTATGAGGCT 1777
Query 1628 ATTGAGGAAAGAATACCGGGAGGCCGAAGAAGCTTTTGAATCAGCTTTCAATTTAGGCCA 1687
|||||||||||||||||||||||| ||||||||||||||| ||||||| || ||||||||
Sbjct 1778 ATTGAGGAAAGAATACCGGGAGGCTGAAGAAGCTTTTGAAACAGCTTTTAACTTAGGCCA 1837
Query 1688 TGTGTATTCTGCTACTGGTTTAGCAAGACTAGGATACATCCAAGGGCATCGGCTTTGGGC 1747
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 TGTGTATTCCGCTACTGGTTTAGCAAGACTAGGATACATCCAAGGGCATCGGCTTTGGGC 1897
Query 1748 TTACGAGAAGCTAAGCTCGGTAATCTCCTCTGTTTCGCCACCTCTCGGGTGGATGTATCA 1807
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1898 TTATGAGAAGCTAAGCTCGGTAATCTCCTCTGTTTCGCCGCCTCTCGGGTGGATGTATCA 1957
Query 1808 GGAAAGGTCTTTCTATTGTGAGGGTGATAAGAAATTGGAAGATCTCGAGAAGGCAACCGA 1867
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1958 GGAAAGGTCTTTCTATTGTGAGGGTGACAAGAAATTGGAAGATCTCGAGAAGGCAACCGA 2017
Query 1868 ATTGGACCCGACTTTGACATATCCTTACATGTATAGAGCTGTCACTCTAATGTCGAAACA 1927
|||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 2018 ATTGGATCCGACTTTGACATATCCTTACATGTATAGAGCTGTCACACGAATGTCGAAACA 2077
Query 1928 AAATGCTAAGGCTGCGCTTGAAGAAATCAATCGGATCTTGGGGTTTAAACTTGCTTTAGA 1987
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2078 AAATGCTAAGGCTGCTCTTGAAGAAATCAATCGGATCTTGGGGTTTAAACTTGCTTTAGA 2137
Query 1988 ATGCTTAGAAATTCGGTTTTGTCTTTATCTTGGTATGGATGACTATGAAGCGGCTCTTCG 2047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2138 ATGCTTAGAAATTCGGTTTTGTCTTTATCTTGGTATGGATGACTATGAAGCGGCTCTTCG 2197
Query 2048 TGATATTCAGGCGGCTCTTACTCTGTGTCCGGATTATCGAATGTTCGATGGGAAAGTAGC 2107
|||||||||||| |||||||| |||||||| |||||| ||||||||||||||||||||||
Sbjct 2198 TGATATTCAGGCTGCTCTTACGCTGTGTCCTGATTATAGAATGTTCGATGGGAAAGTAGC 2257
Query 2108 TGGGAGGCAGCTCCGGACACTTGTGTATGAGCATGTCGAGAATTGGACGACTGCAGATTG 2167
|||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 2258 TGGGAGGCAGCTCCAGACGCTTGTGTATGAGCATGTCGAGAATTGGACAACCGCAGATTG 2317
Query 2168 TTGGATGCAGCTATATGAGAAATGGTCGAATGTTGATGATATAGGTTCTCTTTCAGTAAT 2227
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 2318 TTGGATGCAGCTATATGAGAAATGGTCTAATGTTGATGATATAGGTTCTCTTTCTGTAAT 2377
Query 2228 CTATCAGATGCTCGAATCCGATGCTTGCAAAGGTGTTCTTTACTTCAGGCAATCTTTGCT 2287
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2378 CTATCAGATGCTCGAATCCGATGCTTGCAAAGGTGTTCTCTACTTCAGGCAATCTTTGCT 2437
Query 2288 TCTGCTAAGGTTGAATTGTCCCGAAGCAGCGATGCGTAGTTTACAGTTAGCCCGCGAGCA 2347
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 2438 TCTCCTAAGGTTGAATTGTCCAGAAGCAGCGATGCGCAGTTTACAGTTAGCCCGCGAGCA 2497
Query 2348 TGCCTCGAGTGACCACGAGCGTCTAGTTTACGAAGGATGGATCTTGTATGATACAGGTCA 2407
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2498 TGCCTCAAGTGACCACGAGCGTCTAGTTTACGAAGGATGGATCTTGTATGATACAGGTCA 2557
Query 2408 CTGCGAAGAAGGGCTTCAAAAGGCTAAGGAATCCATTAGAATAAAGAGATCATTCGAAGC 2467
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 2558 CTGCGAAGAAGGGCTTCAAAAGGCTAAGGAATCCATTGGAATAAAGAGATCATTTGAAGC 2617
Query 2468 TTATTTCCTCCAAGCTTATGCCTTAGCGGAATCTAGCCTTGATCCATCGAGTTCTTCGAC 2527
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 2618 TTATTTCCTCCAAGCTTATGCCTTAGCAGAATCTAGCCTTGATCCATCGAGTTCTTCTAC 2677
Query 2528 TGTTGTTTCACTTCTTGAAGATGCTCTTAAATGCCCCTCTGATAGGTTGCGCAAAGGTCA 2587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2678 TGTTGTTTCACTTCTTGAAGATGCTCTTAAATGCCCCTCTGATAGGTTGCGCAAAGGTCA 2737
Query 2588 GGCTCTGAACAATCTTGGGAGCGTCTATGTTGATTGCGAGAAGCTAGACTTAGCTGCGGA 2647
||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 2738 GGCTCTGAACAATCTCGGGAGTGTCTATGTCGATTGCGAGAAGCTAGATTTAGCTGCGGA 2797
Query 2648 TTGCTATATAAACGCTCTTAAGGTAAGGCACACACGTGCACACCAAGGCCTAGCTCGTGT 2707
|||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||
Sbjct 2798 TTGCTATATAAACGCTCTCAAGGTAAGACACACGCGTGCACACCAAGGTCTAGCTCGTGT 2857
Query 2708 CCATTTCCTTAGAAATGACAAAGCTGCAGCCTACGAAGAAATGACCAGACTAATCGAAAA 2767
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2858 CCATTTCCTTAGAAACGACAAAGCTGCAGCCTACGAAGAAATGACCAGACTAATCGAAAA 2917
Query 2768 GGCTCAAAACAATGCATCCGCCTATGAGAAAAGATCTGAGTATTGTGATCGTGAACTCGC 2827
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2918 GGCTCAAAACAATGCATCCGCCTACGAGAAAAGATCTGAGTATTGTGATCGTGAACTCGC 2977
Query 2828 CAAATCTGATCTTGAAATGGTCACCCGGTTAGACCCTCTCCGGGTTTATCCTTATCGATA 2887
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2978 CAAATCTGATCTTGAAATGGTCACCCGGTTAGACCCTCTCCGGGTTTATCCTTACCGATA 3037
Query 2888 TCGCGCTGCAGTGTTGATGGATAGTCGGAAGGAGAGAGAGGCTATTGCGGAGTTATCCCG 2947
|||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||
Sbjct 3038 TCGCGCCGCAGTGTTGATGGATAGTCGGAAAGAGAGAGAGGCTATCACAGAGTTATCCCG 3097
Query 2948 AGCTATCGCATTTAAAGCGGATCTTCATCTTCTTCACTTAAGAGCGGCTTTCCACGAGCA 3007
||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 3098 AGCTATCGCCTTTAAAGCAGATCTTCATCTTCTTCACTTACGAGCGGCTTTCCACGAGCA 3157
Query 3008 CATTGGTGATGTCACGAGTGCATTGCGGGACTGTCGTGCAGCGCTCTCGGTCGACCCCAA 3067
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3158 TATCGGTGATGTCACGAGTGCGTTGCGGGACTGTCGTGCAGCGCTCTCGGTCGACCCCAA 3217
Query 3068 CCATCAGGAGATGCTCGAACTCCATAGCCGTGTTAATAGCCATGAACCTTGAACCGCAAC 3127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3218 CCATCAGGAGATGCTCGAACTCCATAGCCGTGTTAATAGCCATGAACCTTGAACCGCAAC 3277
Query 3128 CACACACAACAGAGCTTCGAGATGAAAGTAAAGTGTGAAAA-TTGTAATACTAAAAGAAT 3186
||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 3278 CACACACAAAAGAGCTTCGATATGAAAGTAAAGTGTGAAAAATTGTAATACTAAAAGAAT 3337
Query 3187 CATAGTTGGAAACTTGT 3203
||| |||||||||||||
Sbjct 3338 CATTGTTGGAAACTTGT 3354
Score = 254 bits (137), Expect = 5e-66
Identities = 193/217 (89%), Gaps = 15/217 (7%)
Strand=Plus/Plus
Query 1 CTCTCTCTCTCACTTCGATTCACTTTTGCT----C---A-AACTTGTCCGAATCTCTCCA 52
|||||||||||||||||||||||||||||| | | ||||||||||||||| ||||
Sbjct 24 CTCTCTCTCTCACTTCGATTCACTTTTGCTCAAACTTGACAACTTGTCCGAATCTGTCCA 83
Query 53 TAGCACA-C-CTC-CTCTGTTTTAGGGTTTTCTCTTGAATCGT--TTCTCTTCCTTTGTC 107
||||||| | ||| |||||||||||||||||||||| | | || || |||||| |||||
Sbjct 84 TAGCACACCTCTCTCTCTGTTTTAGGGTTTTCTCTTCACTGGTGCTT-TCTTCC-TTGTC 141
Query 108 TCGCTGGTTCAAAGATTCTTACTTTTTGATGTCTTAGACATCCTAGATTTGTTAGATTCT 167
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||
Sbjct 142 TCGCTGGTTCAAAGATTCTTACTTTTTGATGTCTAAGACATCTTAGATTTGTTAGACTCT 201
Query 168 CTTTGATTTTTCTGGGTTTAGCCACTAGATTGTGTTA 204
|||| |||||||||||||||||||||||||| |||||
Sbjct 202 CTTTAATTTTTCTGGGTTTAGCCACTAGATTATGTTA 238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 160383716771
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5