BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490295
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02640.2 | Symbols: BZO2H1 | bZIP transcription factor famil... 1834 0.0
> AT4G02640.2 | Symbols: BZO2H1 | bZIP transcription factor family
protein | chr4:1153997-1156320 FORWARD LENGTH=1523
Length=1523
Score = 1834 bits (993), Expect = 0.0
Identities = 1232/1340 (92%), Gaps = 45/1340 (3%)
Strand=Plus/Plus
Query 1 AAGAAGAATCAGAAAGTGAAAAGAGAAAGAGAGCCATGAACAGTATCTTCTCCATTGACG 60
|||||||||||||||||||||| ||| || |||| |||||||||||||||||||||||||
Sbjct 1 AAGAAGAATCAGAAAGTGAAAA-AGAGAGCGAGCGATGAACAGTATCTTCTCCATTGACG 59
Query 61 ATTTCTCCGATCCTTTTTGGGAAACTCCTCCGATTCCTCTCAATCCCGACTCTTCCAAGC 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 ATTTCTCCGATCCTTTCTGGGAAACTCCTCCGATTCCTCTCAATCCCGACTCTTCTAAGC 119
Query 121 TTGTTACGGCTGATGAAGTCAGCCACAGTCAACCCGAATGGACTTTCGAGATGTTTCTCG 180
||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 120 CTGTTACGGCGGATGAAGTTAGCCAGAGTCAACCGGAATGGACTTTCGAGATGTTTCTCG 179
Query 181 AAGAGATTTCTTCGTCGGCGGTGAGCTCTGAGCCACTTGG-----A-AACAACGCGATCG 234
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 180 AAGAGATTTCTTCGTCGGCGGTGAGCTCTGAGCCACTTGGTAACAACAACAACGCGATCG 239
Query 235 TCGGTGTTTCGTCGGCGCAATCTCTTCCTTCTGTTTCTGGACAGAACGATTTCGAGGATG 294
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 240 TCGGTGTTTCTTCGGCGCAATCTCTTCCTTCTGTTTCCGGACAGAATGATTTCGAGGATG 299
Query 295 ATAGTCGATTTCGCGATCGCGATTCGGGGAATTGGGATTGTGCTGCT-GC-T-CCGACGA 351
||||||||||||| |||||||||||||| |||| ||||||||||||| | | ||||||
Sbjct 300 ATAGTCGATTTCGTGATCGCGATTCGGGAAATTTGGATTGTGCTGCTCCCATGACGACGA 359
Query 352 CGACGGTGATTATTGATTCCGATGATTATCATCATCGTGTTCTTAAGGATAAGCTTGAGA 411
|||||||||| ||||||||||||| | | ||| ||||||||||||| | ||||||||||
Sbjct 360 AGACGGTGATTGTTGATTCCGATGA-T-T-ATCGTCGTGTTCTTAAGAACAAGCTTGAGA 416
Query 412 CTGAGTGCG---C---TG---CTGTTAGGGTTGGGTCTGTGAAGCCTGAAGATTCGACTA 462
||||||||| | || || || |||||||||||||||||||||||||||||||||
Sbjct 417 CTGAGTGCGCTACTGTTGTTTCTCTTCGGGTTGGGTCTGTGAAGCCTGAAGATTCGACTA 476
Query 463 GTTCTCCAGAAACTCAATTTCAACCAGTTCAATCCAGTCCTCTTACTCATCAAGGTTCTT 522
||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||
Sbjct 477 GTTCTCCAGAAACTCAACTTCAACCAGTTCAATCCAGTCCTCTTA--C-TCAAGGTTCTT 533
Query 523 TAATGACCCCAGGAGAACTTGGTGTTACTTCTTCCTTACCAGCTGAGGTGaaaaaaaCTG 582
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TGATGACCCCAGGAGAACTTGGTGTTACTTCTTCCTTACCAGCTGAGGTGAAAAAAACTG 593
Query 583 GTGTACCAACGAAGCAGGTTACTAGTGGATCGTCGAGAGAATATTCTGATGACGATGACC 642
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 594 GTGTATCAATGAAGCAGGTTACTAGTGGATCGTCGAGAGAATATTCTGATGACGAGGACC 653
Query 643 TTGATGAAGAGAATGAAACCACCGGTTCCTTGAAGCCAGAGGACGTTAAAAAATCTAGAA 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TTGATGAAGAGAATGAAACCACCGGTTCCTTGAAGCCAGAGGACGTTAAAAAATCTAGAA 713
Query 703 GGATGCTGTCAAATCGTGAGTCAGCTAGGCGATCTAGAAGGAGAAAGCAGGAGCAAACAA 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GGATGCTGTCAAATCGTGAGTCAGCTAGGCGATCTAGAAGGAGAAAGCAGGAGCAAACAA 773
Query 763 GTGATCTCGAAACACAGGTTAATGAGCTAAAGGGTGAACATTCGA-CACTCCTTAAGCAA 821
|||| |||||||||||||||||||| ||||| ||||| ||||| | |||| ||||| |||
Sbjct 774 GTGACCTCGAAACACAGGTTAATGATCTAAAAGGTGAGCATTC-ATCACTTCTTAAACAA 832
Query 822 CTGAGCAACATGAATCACAAGTATGATGAAGCTGCTGTTGGCAATAGAATACTTAAAG-C 880
|||||||||||||||||||||||||| || ||||||||||||||||||||||| |||| |
Sbjct 833 CTGAGCAACATGAATCACAAGTATGACGAGGCTGCTGTTGGCAATAGAATACT-AAAGGC 891
Query 881 TGACATTGAGACATTAAGAGCTAAGGTGAAAATGGCGGAAGAAACCATGAAGAGAGTAAC 940
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 892 TGACATTGAGACATTAAGAGCTAAGGTGAAAATGGCGGAAGAAACCGTGAAGAGAGTAAC 951
Query 941 AGGAATGAATCCGATGCTTCTCGGGGGATCAAGTGGACATAACAACAACA---GAATGCC 997
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 952 AGGAATGAATCCGATGCTTCTCGGAAGATCAAGTGGACATAACAACAACAACAGAATGCC 1011
Query 998 ATTAACTGGTAACAAAAGGATGGATTCTTCTAGCACTATTCCAGCTTTTCAACTACACTC 1057
| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 1012 AATAACTGGTAACAACAGGATGGATTCTTCTAGCATTATTCCAGCTTATCAACCACACTC 1071
Query 1058 AAACCTAAACCATATGTCAAATCCTAA-CATTGGGATCCCAACCATTCTACCTCCAAGAC 1116
||||||||||||||||||||| || || ||| ||||||||||||||||||||||||||||
Sbjct 1072 AAACCTAAACCATATGTCAAA-CCAAAACATCGGGATCCCAACCATTCTACCTCCAAGAC 1130
Query 1117 TCGGAAACAATTTTGTTCCTCCTCCATCCCTAAACTCCCAAACCAGCTCTCCGTTGCAGA 1176
||||||||||||| | | | |||| ||| | ||||||||||||||||| |||||||
Sbjct 1131 TCGGAAACAATTTCG--C-TGCTCC-TCC--A---TCCCAAACCAGCTCTCCCTTGCAGA 1181
Query 1177 GAATAAGAAATGGGCAAAATCACCATGTTGCTCCAGGCGCCAACCCGTATGGCTGGACTA 1236
|||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 1182 GAATTAGAAATGGGCAAAATCACCATGTTACTCCAAGCGCCAACCCGTATGGCTGGAATA 1241
Query 1237 CTGAACCTCAGAACGAATT-AGCATGGCCGAAAAAATGCGGGGACTGATGAAACTTGAAG 1295
| |||||||||||||| || |||||||||||||||||||| |||||||| |||| ||||
Sbjct 1242 CCGAACCTCAGAACGA-TTCAGCATGGCCGAAAAAATGCGTGGACTGATCAAACAAGAAG 1300
Query 1296 CGAGTTTCACGCTATATTAA 1315
|| ||||| | |||||||||
Sbjct 1301 CGGGTTTCGCACTATATTAA 1320
Score = 233 bits (126), Expect = 3e-60
Identities = 155/167 (93%), Gaps = 10/167 (6%)
Strand=Plus/Plus
Query 1310 TATTAAGTTACGAATCATGAGAAAACAT-TTGTGAAAATACAGTCTCATGGC-------T 1361
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1349 TATTAAGTTACGAATCATGAGAAAACATCTTGTGAAAATACAGTCTCATGGCTTATATAT 1408
Query 1362 -TATATAAGCTCTGTCTTATAACATTACAAGATTCTTATTTGAGAATCGTCTTTCTATCT 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1409 ATATATAAGCTCTGTCTTATAACATTACAAGATTCTTATTTGAGAATCGTCTTTCTATTT 1468
Query 1421 ATAGCTAATAACAGAGTG-ATATCTGTTTTTATCAAATTTTaaaaaa 1466
|||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1469 ATAGCTAATAACAGAGTGTATATCTGTTTTTATCCAATTTTAAAAAA 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72338985345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5