BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490296
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02630.1 | Symbols: | Protein kinase superfamily protein | ... 2422 0.0
> AT4G02630.1 | Symbols: | Protein kinase superfamily protein
| chr4:1151613-1153356 FORWARD LENGTH=1744
Length=1744
Score = 2422 bits (1311), Expect = 0.0
Identities = 1506/1596 (94%), Gaps = 30/1596 (2%)
Strand=Plus/Plus
Query 21 AAGAAGAAGAAGAACAAGAGTCAGTGAGCTGCAATGGCGGATTCTCACTCTGTCAACAAT 80
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 38 AAGAAGAAGAAGAAGAAGAGTCAGTGAGCTGCAATGGCGGATTCTCACTCAGTCAACAAT 97
Query 81 CAGCTCTCGAGACACACTTCTATTTTTGGTTTACGTTTATGGGTTGTTCTCGGCGTTTGC 140
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 98 CAGCTCTCGAGACACACTTCCATTTTTGGTTTACGTTTATGGGTTGTTCTCGGCGTTTGC 157
Query 141 GTTGGAGCCGCGATCGTTCTTTTACTTGTTCTCATCTCTCTCTGGTTCATTTACAGACGA 200
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 158 GTTGGAGCCGCGATCGTTCTTTTACTCGTTCTCATCTCTCTCTGGTTCATTTACCGACGA 217
Query 201 AGCAACAAGAACAAAGCTCTTGAGTCTTCTTCTAAATCTAACCATACGATTGTTCCCGTT 260
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 AGCAACAAGAACAAATCTCTTGAGTCTTCTTCTAAATCTAACCATACGATTGTTCCCGTT 277
Query 261 GTTTCCAAGGAGATTCAGGTCGACCCATCTCGACCTCCAATTCAACCCGACCCAACACCG 320
||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 278 GTTTCCAAGGAGATTCA---AGA--GAT-TCGACCTCCAATTCAACCCGACCCAACACCG 331
Query 321 GAGCCTCACCAAAACCAAGAAAGAGAAGACGATAACAAAATTCACATCGAAATTGGAAAA 380
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 332 GAGCCACACCAAAACCAACAAAGAGAAGACGATAACAAAATTCACATCGAAATTGGTAAA 391
Query 381 GATCATCGGATTTCGTACCCGG-A-GA-GA----GGA--GGTT---GGACTGGTTCCGGG 428
|||||||||||| ||||||||| | || || ||| |||| || |||| ||||||
Sbjct 392 GATCATCGGATTGCGTACCCGGAACGAGGAGGTTGGACTGGTTCCGGGTCTGGGTCCGGG 451
Query 429 TCGGGTGATCAGGGTTTACTTATGTCGTCAGGTCCTGAGGTTTCTCATTTAGGTTGGGGA 488
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 452 TCGGGTGATCAGGGTTTACTTATGTTGTCGGGTCCTGAGGTTTCTCATTTAGGTTGGGGA 511
Query 489 CATTGGTATACGTTGAGAGAGCTTGAGGTTTCTACTAATGGATTCGCTGACGAGAATGTG 548
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 512 CATTGGTATACGTTGAGAGAGCTTGAGGTTTCTACTAATGGATTTGCTGACGAGAATGTG 571
Query 549 ATCGGACAAGGAGGTTATGGGATTGTGTATAGAGGTGTTCTTGAGGATAAATCAATGGTG 608
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 ATTGGACAAGGAGGTTATGGGATTGTGTATAGAGGTGTTCTTGAGGATAAATCAATGGTG 631
Query 609 GCTATAAAGAATCTGCTCAACAACAGAGGACAAGCTGAGAAAGAATTTAAAGTCGAAGTC 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GCTATAAAGAATCTGCTCAACAACAGAGGACAAGCTGAGAAAGAATTTAAAGTCGAAGTC 691
Query 669 GAAGCCATTGGTCGAGTGAGACATAAGAATCTGGTGAGATTGCTTGGTTATTGCGTTGAA 728
||||| ||||| || || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 692 GAAGCTATTGGACGCGTAAGACACAAGAATCTGGTGAGATTGCTTGGTTATTGCGTTGAA 751
Query 729 GGAGCTCATAGGATGTTAGTTTACGAGTATGTCGATAATGGGAATTTAGAACAATGGATT 788
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 752 GGAGCTCATAGGATGTTAGTTTACGAGTATGTTGATAATGGGAATTTAGAACAATGGATT 811
Query 789 CACGGTGGTGGGTTGGGATTTAAGAGTCCTCTTACTTGGGAGATTAGAATGAACATTGTT 848
|| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 812 CATGGTGGTGGTTTGGGGTTTAAGAGTCCTCTTACTTGGGAGATTAGGATGAACATTGTT 871
Query 849 CTTGGGACAGCTAAAGGGTTAATGTATTTACACGAAGGTCTCGAGCCTAAAGTTGTTCAT 908
||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 872 CTTGGAACAGCCAAAGGGTTAATGTATTTACACGAAGGTCTTGAGCCTAAAGTTGTTCAC 931
Query 909 CGAGATATTAAATCGAGTAATATCTTGCTTGACAAGCAATGGAACTCGAAAGTTTCCGAC 968
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 932 CGAGATATTAAATCGAGTAATATCTTGCTTGACAAGCAATGGAACTCGAAAGTTTCTGAC 991
Query 969 TTTGGGTTAGCTAAGCTCTTGGGTTCAGAGATGAGCTATGTGACAACTCGTGTGATGGGT 1028
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 992 TTTGGGTTAGCTAAGCTCTTGGGTTCGGAGATGAGCTATGTGACTACTCGTGTGATGGGT 1051
Query 1029 ACGTTTGGGTATGTGGCTCCTGAATACGCGAGTACCGGGATGTTGAATGAGAGGAGCGAT 1088
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1052 ACGTTTGGGTATGTGGCTCCTGAATACGCGAGTACCGGAATGTTGAATGAGAGGAGCGAT 1111
Query 1089 GTTTATAGTTTCGGTGTTCTGGTCATGGAGATTATTTCAGGGAGGAGTCCTGTGGATTAT 1148
|||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 1112 GTTTATAGCTTCGGTGTTCTTGTTATGGAGATTATTTCAGGGAGAAGTCCTGTGGATTAT 1171
Query 1149 AGCCGGCCTCTGGGGGAAGTGAATCTTGTGGAATGGTTGAAGAGAATGGTGACTAATCGA 1208
|||||| ||| ||| |||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1172 AGCCGGGCTCCGGGAGAAGTGAATCTTGTGGAATGGTTGAAGAGATTGGTGACGAATCGA 1231
Query 1209 GATGCGGAAGGAGTTTTGGATCCAAGGATGGTTGATAAACCGTCGTTAAGGTCATTGAAG 1268
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1232 GATGCGGAAGGAGTTTTGGATCCGAGGATGGTTGATAAACCGTCGTTAAGGTCATTGAAG 1291
Query 1269 CGTACCCTTTTGGTAGCTTTAAGATGTGTTGATCCTAATGCTCAAAAGAGGCCTAAAATG 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1292 CGTACCCTTTTGGTAGCTTTAAGATGTGTTGATCCTAATGCTCAAAAGAGGCCAAAAATG 1351
Query 1329 GGTCATATCATTCACATGCTTGAAGCTGAGGACTTAATCTGTAAAGATGATCGGAGAAAC 1388
|||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1352 GGTCATATCATTCATATGCTTGAAGCTGAGGACTTGGTCTCTAAAGATGATCGGAGAAAC 1411
Query 1389 TCCGGTggaggaggaggaggaggTATAGAACAGGGAAGGTCACCGCGGAGGAAGACAAAT 1448
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1412 TC---TGGAGGAGGAGGAGGAGGAATAGAACAGGGAAGGTCACCGCGGAGGAAGACAAAT 1468
Query 1449 GTGAATGAATCAGAGGATGAGAGTGGTGATTCTGTTCTGATCAACAATGACCAATTAGCG 1508
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1469 GTGAATGAATCAGAGGATGAGAGTGGTAATTCTGTTCTGATCAACAATGACCAATTAGCT 1528
Query 1509 TTGGAGAAGAAGGAGAG-TCAGTaaaaaaaaaaaGAGAAAGCTTTGGCATTATAATTTTG 1567
|||||||| ||| ||| | ||||||||| ||| || | ||||||||||||||||||||
Sbjct 1529 TTGGAGAATAAGCAGAACT-AGTAAAAAAGAAA-GA-A--GCTTTGGCATTATAATTTTG 1583
Query 1568 T-TTACTATTTTT-GAAAGtttttttttttGTGTGT 1601
| ||||||||||| ||| ||||||| || |||||||
Sbjct 1584 TATTACTATTTTTAGAA-GTTTTTTCTTGTGTGTGT 1618
Score = 121 bits (65), Expect = 3e-26
Identities = 74/78 (95%), Gaps = 2/78 (3%)
Strand=Plus/Plus
Query 1597 TGTGTGTAGATTCTTGTAATTTTGCAATAATTAAAAATGGGGATTGCTTGAAAAATATCT 1656
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1666 TGTGTGTAGATTCTTGTAATTTTGCAATAATTAAAACTGGGGATTGCTTGAAAAATATAT 1725
Query 1657 ATATGGTTT-TTTGTTTT 1673
||||||||| ||| ||||
Sbjct 1726 ATATGGTTTGTTT-TTTT 1742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82680297615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5