BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490301
Length=1396
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02590.1 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DN... 1875 0.0
AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 614 9e-175
> AT4G02590.1 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:1137498-1140491 REVERSE
LENGTH=1588
Length=1588
Score = 1875 bits (1015), Expect = 0.0
Identities = 1112/1158 (96%), Gaps = 10/1158 (1%)
Strand=Plus/Plus
Query 38 aaaaaaaGTCTGTAGCTTTCGCATGTAAATCTCTCCTTGAAGGCTT-CTAACTCGTTAAT 96
||||||| ||||||||||||||||||||||||||| ||||||| || |||||||||||||
Sbjct 76 AAAAAAA-TCTGTAGCTTTCGCATGTAAATCTCTCTTTGAAGG-TTCCTAACTCGTTAAT 133
Query 97 CGTAACTCACAGTGACTCGTTCGAGTCAAAGTCTCTGTTTTTATCTCAAAACCATGGCTA 156
|||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 134 CGTAACTCACAGTGACTCGTTCGAGTCAAAGTCTCTGTCTTTAGCTC-AAACCATGGCTA 192
Query 157 GTAACAACCCTCACGACAACCTTTCTGACCAAACTCCTTCTGATGATTTCTTCGAGCAAA 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 GTAACAACCCTCACGACAACCTTTCTGACCAAACTCCTTCTGATGATTTCTTCGAGCAAA 252
Query 217 TCCTCGGTCTTCCTAACTTCTCAGCCTCTTCTGCCGCCGGTTTATCTGGCGTTGATGGTG 276
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 253 TCCTCGGCCTTCCTAACTTCTCAGCCTCTTCTGCCGCCGGTTTATCTGGAGTTGACGGAG 312
Query 277 GATTAGGTGGCGGAGCACCGCCGATGATGCTGCAGTTGGGTTCCGGAGATGAAGGAAGTC 336
|||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 313 GATTAGGTGGTGGAGCACCGCCTATGATGCTGCAGTTGGGTTCCGGAGAAGAAGGAAGTC 372
Query 337 ATATGGGTGGCTTAGGAGGAAGTGGACCAACTGGGTTTCACAATCAGATGTTTCCTTTAG 396
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 373 ACATGGGTGGCTTAGGAGGAAGTGGACCAACTGGGTTTCACAATCAGATGTTTCCTTTGG 432
Query 397 GGTTAAGTCTTGATCAAGGGAAAGGACCTGGCTTTCTTAGACCTGAAGGAGGACATGGAA 456
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 433 GGTTAAGTCTTGATCAAGGGAAAGGACCTGGGTTTCTTAGACCTGAAGGAGGACATGGAA 492
Query 457 GTGGCAAAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTGTTT 516
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 GTGGGAAAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTGTTT 552
Query 517 TCCACGGGCAGCCTATGCAACAGCCAGCACCATCGGCACCACATCAGCCTACATCAATCC 576
|||||||||||||||||||||||||| | |||||||| |||||||||||||| |||||||
Sbjct 553 TCCACGGGCAGCCTATGCAACAGCCACCTCCATCGGCCCCACATCAGCCTACTTCAATCC 612
Query 577 G-CCCTAGGGTTCGAGCTAGGCGTGGTCAGGCTACTGATCCACACAGCATCGCTGAGCGG 635
| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 613 GTCCC-AGGGTTCGAGCTAGGCGTGGTCAGGCTACTGATCCACATAGCATCGCTGAGCGG 671
Query 636 CTACGTAGGGAAAGAATAGCAGAACGGATCAGGGCGCTGCAGGAACTCGTACCTACTGTG 695
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 672 CTACGTAGAGAAAGAATAGCAGAACGGATCAGGGCGCTGCAGGAACTTGTACCTACTGTG 731
Query 696 AACAAGACCGATAGAGCTGCTATGATCGATGAGATTGTCGATTATGTAAAGTTTCTCAGG 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 AACAAGACCGATAGAGCTGCTATGATCGATGAGATTGTCGATTATGTAAAGTTTCTCAGG 791
Query 756 CTCCAAGTTAAGGTTTTGAGCATGAGCCGACTTGGTGGAGCCGGCGCGGTTGCTCCACTT 815
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 792 CTCCAAGTCAAGGTTTTGAGCATGAGCCGACTTGGTGGAGCCGGTGCGGTTGCTCCACTT 851
Query 816 GTTACTGATATGCCTCTTTCATCATCAGTTGAGGATGAAACGGGTGATGGTGGAAGGACT 875
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 852 GTTACTGATATGCCTCTTTCATCATCAGTTGAGGATGAAACGGGTGAGGGTGGAAGGACT 911
Query 876 CCGCAACCCGCATGGGAGAAATGGTCTAACGATGGGACTGAACGTCAAGTGGCTAAACTG 935
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 CCGCAACCAGCGTGGGAGAAATGGTCTAACGATGGGACTGAACGTCAAGTGGCTAAACTG 971
Query 936 ATGGAAGAAAATGTTGGAGCCGCGATGCAGCTTCTTCAATCAAAGGCTCTTTGTATGATG 995
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 ATGGAAGAGAACGTTGGAGCCGCGATGCAGCTTCTTCAATCAAAGGCTCTTTGTATGATG 1031
Query 996 CCAATCTCATTGGCAATGGCAATTTACCATTCTCAGCCTCCGGATACATCTTCAGTGGTC 1055
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1032 CCAATCTCATTGGCAATGGCAATTTACCATTCTCAACCTCCGGATACATCTTCAGTGGTC 1091
Query 1056 AAGCCAGAGA-CGAATCCTCCACAGTAGGATTTGTGCAATAAAAGAGTTTGTACAGC-AA 1113
||||| |||| | |||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 1092 AAGCCTGAGAAC-AATCCTCCACAGTAGGATTTCTGCAATAAA-GAGTTTGTACAGCTAA 1149
Query 1114 TCCAACGGTCCAACATGGGTTTTGCTTCTGCTCTATTGACTCTGGTTTCTTCTCTACTCT 1173
|||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 1150 TCCAACTGTCCAACATGGGTTTTTCTTCTGCTCTAATGACTCTGGTTTCTTCTCTCCTCT 1209
Query 1174 CACACCCACTTGAAAGGT 1191
| ||||||||||||||||
Sbjct 1210 CTCACCCACTTGAAAGGT 1227
Score = 298 bits (161), Expect = 1e-79
Identities = 190/203 (94%), Gaps = 6/203 (3%)
Strand=Plus/Plus
Query 1188 AGGTGGACTTTGATGAAAGCAACTTTTTGTTTTCAAGACTTTAGTGGGAGGTTGAGGAAG 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 AGGTGGACTTTGATGAAAGCAACTTTTTGTTTTCAAGACTTTAGTGGGAGGTTGAGGAAG 1403
Query 1248 GAGCTTGCAGTGGTATTATT-ATTAGTAGTAGTAGT-G-GGGAGGT-GTGGGACCTCGTT 1303
||||||| || ||| ||||| ||||||||||||||| | |||| || ||||||||| |||
Sbjct 1404 GAGCTTGAAG-GGTGTTATTTATTAGTAGTAGTAGTAGTGGGAAGTTGTGGGACCTTGTT 1462
Query 1304 GAGTTATGTTCAAATTGAAGAAAAAT-AAGTATTTGTAATTTGTCATCCCTTGTATTATT 1362
||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1463 GAGTTGTGTTCAAATTGAAGAAAAAACAAGTATTTGTAATTTGTCACCCCTTGTATTATT 1522
Query 1363 ATTTATTTTGTATGACTTTGGAG 1385
|||||||||||||||||||||||
Sbjct 1523 ATTTATTTTGTATGACTTTGGAG 1545
Score = 73.1 bits (39), Expect = 7e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1 TCTGTCTTCTTCGTCCTCATTCGTTTTAAAGCATCaaaa 39
|||||||||||||||||||||||||||||||||||||||
Sbjct 15 TCTGTCTTCTTCGTCCTCATTCGTTTTAAAGCATCAAAA 53
> AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:703906-706631 REVERSE LENGTH=1456
Length=1456
Score = 614 bits (332), Expect = 9e-175
Identities = 668/819 (82%), Gaps = 68/819 (8%)
Strand=Plus/Plus
Query 292 CACCGCCGATGATGCTGCAG-TTGGGTTCCGG--A-G-A-TGAAGGA-AGTCATATGGGT 344
|||| ||||||||||| ||| || ||||| || | | | ||| | | ||||||||||
Sbjct 314 CACCTCCGATGATGCTTCAGCTT-GGTTCAGGCAACGAAGGGAATCATAATCATATGGGT 372
Query 345 GGC-TTAGGAGGAAGTGGACCAACT-GGGTTTCACAATCAGATGTTTCCTTTAGGG-TTA 401
| | || |||||| ||||||| | |||||||| |||||||||||||| || ||| |||
Sbjct 373 GCCATT-GGAGGAGGTGGACC-TGTAGGGTTTCATAATCAGATGTTTCCGTT-GGGATTA 429
Query 402 AGTCTTGATCAAGGGAAAGGACCTGGCTTTCTTAGACCTGAAGGAGGACATGGAAGTGGC 461
||||| |||||||||||||||| ||||||||||| ||||| | || || | | ||
Sbjct 430 AGTCTCGATCAAGGGAAAGGACATGGCTTTCTTAAACCTG-ATGA-AAC-T-G--GT--- 480
Query 462 AAAAGATTCTC-AGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTGTTTTCCA 520
||| | ||| | ||| |||||| |||||||||||||||| |||||||||||| |||||||
Sbjct 481 AAACGTTTC-CAAGACGATGTTCTTGATAATCGATGTTCCTCTATGAAACCTATTTTCCA 539
Query 521 CGGGCAGCCTATG-CAACAGCCAG---CACC-AT-CGGCACCACATCAGCCTACATCAAT 574
|||||||| ||| | |||||||| |||| || | ||| || | ||| |||| | ||
Sbjct 540 TGGGCAGCCAATGTC-ACAGCCAGCTCCACCAATGCCGCATCA-A-CAGTCTAC-T--AT 593
Query 575 CCGCCCTAGGGTTCGAGCTAGGCGTGGTCAGGCTACTGATCCACACAGCATCGCTGAGCG 634
|| ||||| ||| | |||||||| ||||| ||||| |||||||| |||||||||||| |
Sbjct 594 TCGGCCTAGAGTTAGGGCTAGGCGAGGTCAAGCTACCGATCCACATAGCATCGCTGAGAG 653
Query 635 GCTACGTAGGGAAAGAATAGCAGAACGGATCAGGGCGCTGCAGGAACTCGTACCTACTGT 694
||| || ||||||||||||||||||||||||||| || |||||||||| |||||||| ||
Sbjct 654 GCTCCGAAGGGAAAGAATAGCAGAACGGATCAGGTCGTTGCAGGAACTTGTACCTACCGT 713
Query 695 GAACAAGACCGATAGAGCTGCTATGATCGATGAGATTGTCGATTATGTAAAGTTTCTCAG 754
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 714 TAACAAGACAGATAGGGCTGCTATGATCGACGAGATTGTCGATTATGTAAAGTTTCTCAG 773
Query 755 GCTCCAAGTTAAGGTTTTGAGCATGAGCCGACTTGGTGGAGCCGGCGCGGTTGCTCCACT 814
||||||||||||||| ||||||||||||| |||||||||||||| || || || |||||
Sbjct 774 GCTCCAAGTTAAGGTCCTGAGCATGAGCCGTCTTGGTGGAGCCGGTGCTGTCGCACCACT 833
Query 815 TGTTACTGATATGCCTCTT-TCATCATCAGTTGAGGATGAAACGGGTGATGGTGGAAGGA 873
|| ||||| ||||| || || ||||||||||||||||| ||| | ||
Sbjct 834 AGTCACTGAAATGCCA-TTATCTTCATCAGTTGAGGATGAGACGC---A-GG-------- 880
Query 874 CTCCGCAACCCGCATGGGAGAAATGGTCTAACGATGGGACTGA-ACGTCAAGTGGCTAAA 932
| | | | |||||||||||||| ||||||||||| || | | |||||||||||
Sbjct 881 C-C-GT-----G--TGGGAGAAATGGTCAAACGATGGGACAGAGAGG-CAAGTGGCTAAG 930
Query 933 CTGATGGAAGAAAATGTTGGAGCCGCGATGCAGCTTCTT-CAATCAAAGGCTCTTTGTAT 991
|||||||||||||| |||||||| |||||||| ||| || ||||||||||||||||| ||
Sbjct 931 CTGATGGAAGAAAACGTTGGAGCAGCGATGCAACTT-TTGCAATCAAAGGCTCTTTGCAT 989
Query 992 GATGCCAATCTCATTGGCAATGGCAATTTACCATTCTCAGCCTCCGGATACATCTTC--- 1048
||||| ||||||||||||||||| ||||||||||||||||| || || ||||||||
Sbjct 990 AATGCCGATCTCATTGGCAATGGCGATTTACCATTCTCAGCCACCAGACACATCTTCTTC 1049
Query 1049 AGTGGTCAAGCCAGAGACGAATCCTCCACAGTAGGATTT 1087
| | ||||| ||||||| ||||||||||| |||| ||||
Sbjct 1050 AATCGTCAAACCAGAGATGAATCCTCCACCGTAG-ATTT 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68774746650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5