BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490304
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02580.1 | Symbols: | NADH-ubiquinone oxidoreductase 24 kDa... 1681 0.0
> AT4G02580.1 | Symbols: | NADH-ubiquinone oxidoreductase 24 kDa
subunit, putative | chr4:1134467-1137156 FORWARD LENGTH=1137
Length=1137
Score = 1681 bits (910), Expect = 0.0
Identities = 1046/1108 (94%), Gaps = 23/1108 (2%)
Strand=Plus/Plus
Query 1 AATCCTGCGCCAGGTGATTTGATTAGTGAGATACCGAGTCTAGCTCCTTGGTTTCTCTGC 60
|||||||||||| | | ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 AATCCTGCGCCA-G-G---TGA-TAGTGAGATACCGAGTCTAGCTCCTTGGTTTCTCTGC 54
Query 61 TTCTCCTTGTCTCTCAGATC--AAAAAAGCTTCGTGTGCGTCTCTCGTTCGCT-TAAGTT 117
|||||||| ||||||||||| |||||| |||||||||||||||||| || || ||| ||
Sbjct 55 TTCTCCTTCTCTCTCAGATCAAAAAAAACCTTCGTGTGCGTCTCTCG-TC-CTCTAAATT 112
Query 118 GTCGAAAATGCTGGCTCGGCTCGCCGCTAAGCGTCTTCTCGAGATCCGTCAAGTTTTCCG 177
|||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 113 GTCGAAAATGCTGGCTAGGCTCGCTGCGAAGCGTCTTCTCGAGATCCGTCAAGTTTTCCG 172
Query 178 CCAACCAACCTCTCAGGT-ATCTCGTAGCTTATCGACGGCCTTAAATTACCATCTGGATT 236
||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct 173 TCAACCAACCTCTCAGGTGA-CTCGTAGCTTATCGACGGCCTTAAACTACCATCTGGATT 231
Query 237 CTCCTGATAACAAACCCGATCTTCCATGGGAGTTTTCTGAGGCAAACCAATCTAAGGTTA 296
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 232 CTCCTGATAACAAACCCGATCTTCCATGGGAGTTTTCAGAGGCTAACCAATCTAAGGTTA 291
Query 297 AGGAGATACTCTCTTACTATCCATCCAATTACAAGCAGTCCGCAGTTATTCCTCTTCTAG 356
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 292 AGGAGATTCTCTCTTACTATCCATCCAATTACAAGCAGTCCGCAGTTATTCCTCTCCTAG 351
Query 357 ATCTTGCACAACAGCAGCATGGAGGCTGGCTCCCTGTTTCTGCTATGAATGCGGTTGCTA 416
||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||
Sbjct 352 ATCTTGCACAACAGCAGAATGGAGGCTGGCTCCCTGTTTCAGCAATGAATGCGGTTGCTA 411
Query 417 AAGTTATTGAAGTTGCTCCTATCCGTGTTTATGAGGTTGCAACATTTTACTCAATGTTCA 476
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AAGTTATAGAAGTTGCCCCTATCCGTGTTTATGAGGTTGCAACATTTTACTCAATGTTCA 471
Query 477 ACAGGGCAAAGGTTGGAAAGTACCACCTTCTAGTTTGTGGCACAACACCATGCATGATCC 536
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 472 ACAGAGCAAAGGTTGGAAAGTATCACCTTCTAGTTTGTGGCACAACACCTTGCATGATCC 531
Query 537 GTGGTTCACGAGACATCGAATCAGCTTTGCTAGACCATTTGGGAGTGAAACGCGGTGAAG 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 532 GTGGTTCACGAGACATCGAATCAGCTTTGCTAGACCATTTGGGAGTGAAACGCGGTGAGG 591
Query 597 TCACTAAGGATGGTTTGTTCTCTGTTGGAGAGATGGAATGCATGGGTTGTTGTGTTAATG 656
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 592 TCACAAAGGATGGTTTGTTCTCTGTTGGAGAGATGGAGTGCATGGGATGTTGTGTTAATG 651
Query 657 CACCCATGATCACTGTGGCAGACTATTCGAATGGATCAGAAGGATATACATATAACTATT 716
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 652 CACCCATGATCACTGTGGCTGACTATTCCAATGGATCAGAAGGATATACATATAACTATT 711
Query 717 TCGAAGATGTCACACCTGAGAAAGTCGTAGAGATTGTTGAAAAGCTGAGAAAAGGAGAAA 776
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 712 TCGAAGATGTTACACCTGAGAAAGTCGTAGAAATTGTTGAAAAGCTGAGAAAAGGAGAAA 771
Query 777 AGCCACCGCATGGAACTCAGAACCCAAAGAGGATCAAGTGCGGACCAGAAGGAGGAAATA 836
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 772 AGCCACCGCATGGAACTCAGAACCCGAAGAGGATCAAGTGTGGACCAGAAGGAGGGAATA 831
Query 837 AGACACTGCTTGGTGAGCCTAAGCCACCGCAATTCCGTGATCTTGATGCATGCTAA-GCT 895
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 832 AGACACTGCTTGGTGAGCCTAAGCCACCACAATTCCGTGATCTTGATGCATGCTAAAGCT 891
Query 896 AAGTTCTGTTCGCCGCAGTTTTATGTGGTTCAATAACGCAAAGGCTATAGCGATGT-T-T 953
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 892 AAGTTCTGTTTGCCGCAGTTTTATGTGGTTCAATAACGCAAAGGCTATAGCGATGTATGT 951
Query 954 --GACGCCTGTA--GCATCAAATTGAGTTTGCATACTCTTTGTAGTCTTCTTGGTTT-GG 1008
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 952 TTGACGCCTGTACCGCATCAAATTGAGTTTGCATACTCTTTGTAGTCTTCTTGGTTTTGG 1011
Query 1009 AATTTAGACCCATTTTAAACAAATTGCCAAAATCATCCTCGTTTATTACGATCTCACTTC 1068
||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||| |
Sbjct 1012 AATTTAGACCCATTTTAAACAAATTGCCAAA-TCATCTTCGTTTATTATTATCTCACT-C 1069
Query 1069 CAAGATTTATGTGAAATTCTAATAAAAA 1096
|||||| |||||||||| |||||||||
Sbjct 1070 TAAGATTCATGTGAAATTGTAATAAAAA 1097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53714583150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5