BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490316
Length=1744
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02500.1 | Symbols: ATXT2, XXT2, XT2 | UDP-xylosyltransferas... 2789 0.0
> AT4G02500.1 | Symbols: ATXT2, XXT2, XT2 | UDP-xylosyltransferase
2 | chr4:1101507-1103610 FORWARD LENGTH=1782
Length=1782
Score = 2789 bits (1510), Expect = 0.0
Identities = 1690/1771 (95%), Gaps = 36/1771 (2%)
Strand=Plus/Plus
Query 2 AGTAACTTTGGTAATTAACA--G--ATTATCAAATTCGAATCTCTGACATTAATGGAAAC 57
|||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 5 AGTAACTTTGGTAATTAACAGTGTTATTATCAAATTCGAATCTCTTACATTAATGGAAAC 64
Query 58 TCAGATCTTCTCTTAAAAACAC----A-CA-A-AGC----AC--A-AATCTT-T------ 96
|||||||||||||||||||||| | || | | | || | |||||| |
Sbjct 65 TCAGATCTTCTCTTAAAAACACATAAAGCACAGATCTTTTACAGAGAATCTTGTAAGAAG 124
Query 97 -AAGAAGATGATTGAGAGGTGTTTAGGAGCTTACCGGTGCCGGAGAATCCAAAGAGCATT 155
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 125 AAAGAAGATGATTGAGAGGTGTTTAGGAGCTTACCGGTGCCGGAGAATCCAAAGAGCTTT 184
Query 156 ACGTCAATTAAAGGTAACGATTCTCTGTCTTGTTCTCACCGTAGTTGTCCTACGTAGCAC 215
||| ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 185 ACGCCAATTAAAGGTAACGATTCTCTGTCTTCTTCTTACCGTTGTTGTCCTACGTAGCAC 244
Query 216 AATCGGCGCCGGTAAATTCGGAACTCCGGAGCAAGATCTTGACGAGATCCGTCAACATTT 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 AATCGGCGCCGGTAAATTCGGAACTCCGGAGCAAGATCTTGACGAGATCCGTCAACATTT 304
Query 276 CCACGCACGCAAACGAGGTGAGCCTCACCGTGTCCTTGAAGAAATCCAGACCGGAGGAGA 335
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 305 CCACGCACGCAAACGAGGTGAGCCTCACCGTGTCCTCGAAGAAATTCAGACCGGAGGAGA 364
Query 336 TTCTTCTTCTTCCTCCGGTGACGGTGGAGGTAATTCCGGTGGGAGTAATAACTATGAGAC 395
||||||||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 365 TTCTTCTTC--C----GGTGACGGTGGAGGTAATTCCGGTGGGAGTAATAACTACGAGAC 418
Query 396 GTTTGACATCAACAAGATATTCGTTGACGAAGGTGAAGAAGAGAAACCCGACCCGAATAA 455
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTTTGACATCAACAAGATTTTCGTTGACGAAGGTGAAGAAGAGAAACCCGACCCGAATAA 478
Query 456 ACCTTACACTCTCGGACCCAAGATATCAGATTGGGATGAGCAGAGATCCGATTGGTTAGC 515
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 479 ACCTTACACTCTCGGACCCAAGATATCAGATTGGGATGAGCAGAGATCTGATTGGTTAGC 538
Query 516 TAAGAACCCTAGCTTCCCTAATTTCATCGGACCAAACAAGCCACGTGTCCTTTTGGTTAC 575
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 539 TAAGAACCCTAGCTTCCCTAATTTCATCGGACCTAACAAGCCACGTGTTCTTTTGGTGAC 598
Query 576 TGGTTCGGCGCCAAAACCATGTGAGAATCCTGTCGGTGATCATTACCTCTTGAAATCGAT 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGGTTCGGCGCCAAAACCATGTGAGAATCCTGTCGGTGATCATTACCTCTTGAAATCGAT 658
Query 636 CAAGAACAAGATCGATTACTGTAGGTTACATGGGATCGAGATCTTCTATAATATGGCTCT 695
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 659 CAAGAACAAGATCGATTACTGTAGGTTACATGGGATCGAGATCTTCTACAACATGGCTCT 718
Query 696 TCTTGATGCGGAGATGGCTGGTTTTTGGGCAAAGCTACCGTTGATTAGGAAGCTTTTGTT 755
||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 719 TCTCGATGCAGAGATGGCTGGTTTTTGGGCAAAGCTTCCATTGATTAGGAAGCTTTTGTT 778
Query 756 GTCACATCCTGAGATTGAGTTTCTTTGGTGGATGGATAGTGATGCTATGTTTACGGATAT 815
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 779 GTCACATCCTGAGATTGAGTTTCTTTGGTGGATGGATAGTGATGCTATGTTTACAGATAT 838
Query 816 GGCTTTTGAGCTTCCATGGGAGAGGTATAAAGATTACAATCTGGTGATGCATGGATGGAA 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GGCTTTTGAGCTTCCATGGGAGAGGTATAAAGATTACAATCTGGTGATGCATGGATGGAA 898
Query 876 TGAGATGGTTTATGATCAGAAGAATTGGATTGGGTTGAATACTGGGAGTTTCTTGCTTAG 935
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 899 TGAGATGGTTTATGATCAGAAGAATTGGATTGGGTTGAATACAGGGAGTTTCTTGCTTAG 958
Query 936 GAACAATCAATGGGCACTTGATTTGCTCGATACTTGGGCTCCTATGGGTCCTAAAGGAAA 995
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 959 GAACAATCAATGGGCACTTGATTTGCTTGATACTTGGGCTCCCATGGGTCCTAAAGGGAA 1018
Query 996 GATCCGTGAAGAAGCGGGTAAGGTTTTAACCCGTGAGCTCAAGGATAGACCGGTGTTCGA 1055
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1019 GATCCGTGAAGAAGCGGGTAAGGTTTTGACCCGTGAGCTCAAGGATAGACCGGTGTTCGA 1078
Query 1056 AGCTGATGATCAGTCTGCTATGGTTTATCTGTTGGCTACTCAGCGAGACGCTTGGGGAAA 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1079 AGCTGATGATCAGTCTGCTATGGTTTATCTGTTGGCTACTCAGCGAGACGCTTGGGGCAA 1138
Query 1116 TAAGGTGTACCTAGAAAGTGGATACTATCTTCACGGTTACTGGGGGATTCTTGTGGACCG 1175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1139 TAAGGTGTACCTAGAAAGTGGATACTATCTTCACGGTTACTGGGGGATTCTTGTGGACAG 1198
Query 1176 ATATGAAGAAATGATAGAAAACTACCACCCGGGTCTAGGCGATCACAGATGGCCATTGGT 1235
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1199 ATATGAAGAAATGATAGAAAACTACCACCCGGGTCTAGGAGATCACAGATGGCCATTGGT 1258
Query 1236 GACTCACTTTGTCGGTTGCAAACCCTGTGGGAAATTTGGTGATTACCCGGTGGAACGTTG 1295
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1259 GACTCACTTTGTCGGTTGCAAACCGTGTGGGAAATTTGGTGATTACCCGGTGGAACGGTG 1318
Query 1296 TCTAAAACAAATGGACAGAGCCTTTAACTTTGGAGATAACCAGATTCTGCAAATCTATGG 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TCTAAAACAAATGGACAGAGCCTTTAACTTTGGAGATAACCAGATTCTGCAAATCTATGG 1378
Query 1356 TTTCACTCACAAATCTTTGGCTAGTCGCAAAGTCAAGAGAGTGCGAAACGAGACTAGCAA 1415
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1379 TTTCACTCACAAATCTTTGGCTAGTCGTAAAGTCAAGAGAGTGCGGAACGAGACTAGCAA 1438
Query 1416 TCCGTTGGAGATGAAAGACGAGCTCGGGTTGCTTCACCCGGCGTTTAAGGCGGTTAAGGT 1475
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1439 TCCGTTGGAGATGAAAGACGAGCTCGGGTTGCTTCATCCGGCGTTTAAGGCGGTTAAGGT 1498
Query 1476 ACAAACCAATCAAGTTTGAATCAGATCTGCGTTTAGGATTTGTGCTCTGTTACTTACTAT 1535
|||||||||||||||||||||| | | ||||||||||||||||| | |||| || ||||
Sbjct 1499 ACAAACCAATCAAGTTTGAATCGGTTTTGCGTTTAGGATTTGTGTTATGTTTCTCGCTAT 1558
Query 1536 ATTTATGTCTTGCGTCTTTGCTTGTTGTTGTACTAAGATGGATGATAAAAGTATTGTGCA 1595
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1559 ATTTATGTCTTGTGTCTTTGCTTGTTGTTGTACTAAGATGGATGATAAA-GTATTGTGCA 1617
Query 1596 GAGACATCAGTTTATTCTTTGGTTTTACTTTGTCTCTACGTCTAGAGTTCTATTACGAAA 1655
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GAGACATCAGTTAATTCTTTGGTTTTACTTTGTCTCTACGTCTAGAGTTCTATTACGAAA 1677
Query 1656 TCAAAATGTTGtttttcttccttttt-tat-tttGTAATCCATTAGAACTTGAGATTTTG 1713
|||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 1678 TCAAAATGTTGTTTTTCTTCCTTTTTGT-TCTTTGTAATCCATTAGAACTTGAGATTTTG 1736
Query 1714 TAGCTTCATGGATCAATAATCTGTGTTAATT 1744
|||||||||||||||||||||||||||||||
Sbjct 1737 TAGCTTCATGGATCAATAATCTGTGTTAATT 1767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86244536310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5