BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490317
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02485.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1083 0.0
> AT4G02485.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr4:1092681-1094597
FORWARD LENGTH=855
Length=855
Score = 1083 bits (586), Expect = 0.0
Identities = 683/728 (94%), Gaps = 13/728 (2%)
Strand=Plus/Plus
Query 2 AAATAAAATAATGGAGGATGAAGCAGAGAATTTGAGAGCAGCTTTTGGCGATTCATCGGA 61
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 5 AAATAAAATAATGGACGAAGAAGCAGAGAATTTGAGAGCAGCTTTTGGCGATTCATCGGA 64
Query 62 TGAT---G--A----AGATCGGCCGGGAAAAGAAACCATAGGGATCGGAGAATCGACGGT 112
|||| | | |||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 65 TGATGAAGATATCGCAGATCGGCCGGGAAAAGAAACCATAGGGATCGGAGATTCGGCGGT 124
Query 113 ATGGGAGCGAGTGGAGGAGATAAATGGTTTATGGCTCTGTAGAAACTTTCTCTCTATTGC 172
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 125 ATGGGAGAGAGTGGAGGAGATAAATGGTTTATGGCTCTATAGAAACTTTCTCTCTATTGC 184
Query 173 TCATCAGTCTGATTTGCTCTCCGCGATTCTAAACGAAGGTTGGTTCGTTGAAGAATCTAT 232
|||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 185 TCATCAGTCTCATTTACTCTCCGCCATTCTAAACGAAGGTTGGTTCGTTGAAGAATCTAT 244
Query 233 TAACCAGGCGATGAGATTTGGTGATCTCCCTTCATGGGCAACAGAACTATCTGATCTCAT 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 TAACCAGGCGATGAGATTTGGTGATCTCCCTTCATGGGCAACAGAACTATCTGATCTCAT 304
Query 293 ACGCCAGACTGTGGAATCTGTTGATCTTCCGGTGTTGTCTGCTGATTTACTGTGGAGAGA 352
|||| |||| |||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 305 ACGCGAGACACTGGAATCTGTTGATCTTCCGGTCTTGTCTGCTGATTTACTCTGGAGAGA 364
Query 353 ACCTCTGTTTGACCAGCTCATTGTCAATTTGTACCAACCAGGTGAGGGAATTTGTGCACA 412
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 ACCTCTGTTCGACCAGCTCATTGTCAATTTGTACCAACCAGGTGAGGGAATTTGTGCACA 424
Query 413 TGTTGATCTGCTGCGTTTTGAAGATGGAATTGCCATTGTCTCTCTGGAGTCCCCTTGCGT 472
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 425 TGTTGATCTGCTGCGTTTTGAAGATGGGATTGCCATCGTCTCTCTGGAGTCACCTTGCGT 484
Query 473 GATGCGGTTCAGTCCCGCAGAAAAGGAA-GAAGATGAATATGTGGATATTTTGTTGAGCC 531
||||||||||||||||||||||||| || ||| ||||| ||||||| ||||| ||| ||
Sbjct 485 GATGCGGTTCAGTCCCGCAGAAAAG-AACGAATATGAAGCTGTGGATGTTTTGCTGAACC 543
Query 532 CAGGATCTCTCATTCTCATGTCTGGAGTAGCTCGGTATCGATGGAAACACGAGATTAATC 591
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 544 CGGGATCTCTCATTCTCATGTCTGGAGAAGCTCGGTATCGATGGAAACACGAGATTAATC 603
Query 592 GAAAGCAGAATGGGTTTCAGGTATGGGAAGGAGAAGAAATTGATCAGAAACGAAGAATCT 651
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 604 GAAAGCAGAATGGGTTTCAGCTATGGGAAGGAGAAGAAATTGATCAGAAACGAAGAATCT 663
Query 652 CCATTACCTTGAGAAAGCTATGTCAAGCGTAAGTGTGT-AGTCAATCTGATTTAAATCTT 710
|||||||||||||||||||||||||||| |||| |||| | |||||| ||||| |||| |
Sbjct 664 CCATTACCTTGAGAAAGCTATGTCAAGCCTAAGGGTGTTA-TCAATCCGATTTTAATCCT 722
Query 711 TATTAGAG 718
||||||||
Sbjct 723 TATTAGAG 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36620693163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5