BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490319
Length=3065
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02460.1 | Symbols: PMS1 | DNA mismatch repair protein, puta... 4407 0.0
> AT4G02460.1 | Symbols: PMS1 | DNA mismatch repair protein, putative
| chr4:1076136-1080722 REVERSE LENGTH=3154
Length=3154
Score = 4407 bits (2386), Expect = 0.0
Identities = 2794/2986 (94%), Gaps = 48/2986 (2%)
Strand=Plus/Plus
Query 102 CAGATTACTGTGGTGTTGATTCGATTGAGGATATTAACCGGTTTATATGGTTTTGAAAAT 161
|||| ||| |||||||||||||||||||||| ||| | | ||||||| ||||| | ||||
Sbjct 155 CAGAGTACGGTGGTGTTGATTCGATTGAGGAGATTCATCTGTTTATAGGGTTTAGCAAAT 214
Query 162 GCAAGGAGATT-TGTCTCCGTCTCCGACGATTACTAGCTCTCCTTTGATAAGACCGATAA 220
||||||||||| | |||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 215 GCAAGGAGATTCT-TCTCCGTCTCCGACGACTACTAGCTCTCCTTTGATAAGACCTATAA 273
Query 221 ACAGAAACGTAATTCACAGAATCTGCTCCGGTCAAGTCATCTTAGACCTCTCTTCTGCCG 280
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 274 ACAGAAACGTAATTCACAGAATCTGTTCCGGTCAAGTCATCTTAGACCTCTCTTCGGCCG 333
Query 281 TCAAGGAGCTTGTGGAGAACAGTCTCGACGCCGGAGCTACCAGTATAGAGATCAACCTCC 340
||||||||||||| ||||| |||||||||||||| || |||||||||||||| |||||||
Sbjct 334 TCAAGGAGCTTGTCGAGAATAGTCTCGACGCCGGCGCCACCAGTATAGAGATTAACCTCC 393
Query 341 GAGACTACGGCGAAGACTACTTTCAGGTCATTGACAATGGTTGTGGCATTTCCCCTACCA 400
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 394 GAGACTACGGCGAAGACTATTTTCAGGTCATTGACAATGGTTGTGGCATTTCCCCAACCA 453
Query 401 ATTTCAAGGTTCTAGCACTCAAGCATCATACTTCTAAATTGGAGGATTTCACAGATCTTC 460
||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 454 ATTTCAAGGTTCTTGCACTTAAGCATCATACTTCTAAATTAGAGGATTTCACAGATCTTT 513
Query 461 TGAATTTGACTACTTATGGTTTTAGAGGAGAAGCCTTGAGCTCTCTCTGTGCATTGGGCA 520
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 514 TGAATTTGACTACTTATGGTTTTAGAGGAGAAGCCTTGAGCTCTCTCTGTGCATTGGGAA 573
Query 521 ATCTGACGGTGGAAACAAGAACAAAGAATGAGCCAGTTGCTACGCTCTTGACGTTTGATC 580
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 ATCTCACTGTGGAAACAAGAACAAAGAATGAGCCAGTTGCTACGCTCTTGACGTTTGATC 633
Query 581 ATTCTGGTTTGCTTACTGCTGAAAAGAAGACTGCACGCCAAATTGGTACCACTGTCACTG 640
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 634 ATTCTGGTTTGCTTACTGCTGAAAAGAAGACTGCTCGCCAAATTGGTACCACTGTCACTG 693
Query 641 TTAGGAAGTTGTTCTCTAATTTACCTGTACGAAGCAAAGAGTTTAAGCGCAATATACGCA 700
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 694 TTAGGAAGTTGTTCTCTAATTTACCTGTACGAAGCAAAGAGTTTAAGCGGAATATACGCA 753
Query 701 AAGAATATGGGAAGCTTGTATCTTTGTTGAACGCATATGCACTTATTGCGAAAGGAGTGC 760
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 754 AAGAATATGGGAAGCTTGTATCTTTATTGAACGCATATGCGCTTATTGCGAAAGGAGTGC 813
Query 761 GGTTTGTCTGCTCTAACACGAGTGGGAAAAATCCTAAGTCTATTGTGCTGAACACACAAG 820
||||||||||||||||||||| ||||||||| || |||||| ||||||||||||||||||
Sbjct 814 GGTTTGTCTGCTCTAACACGACTGGGAAAAACCCAAAGTCTGTTGTGCTGAACACACAAG 873
Query 821 GGAGGGGTTCACTTAAAGACAATATCATAACAGTTTTCGGCATGAACACCTTTACAACTC 880
||||||||||||||||||| ||||||||||||||||||||||| | |||||||||| ||
Sbjct 874 GGAGGGGTTCACTTAAAGATAATATCATAACAGTTTTCGGCATTAGTACCTTTACAAGTC 933
Query 881 TACAGCCTGTTGGTATGTGTATATCAGAAGATTGTAGAGTTGAAGGGTTTCTTTCCAAGC 940
|||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 934 TACAGCCTGTAAGTATATGTGTATCAGAAGATTGTAGAGTTGAAGGGTTTCTTTCCAAGC 993
Query 941 CTGGACAGGGTACTGGACGCAATTTGGCAGATCGACAGTATTTCTTTATAAATGGTCGGC 1000
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 994 CTGGACAGGGTACTGGACGCAATTTAGCAGATCGACAGTATTTCTTTATAAATGGTCGGC 1053
Query 1001 CTGTTGAAATGCCAAAAGTCAGCAAATTGGTGAATGAGTTATATAAAGATACAAGTTCTC 1060
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1054 CTGTAGATATGCCAAAAGTCAGCAAGTTGGTGAATGAGTTATATAAAGATACAAGTTCTC 1113
Query 1061 GGAAATATCCAGTTGCCATTCTGGATTTTGTTGTGCCAGGTGGAGCATGTGATTTGAATG 1120
|||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1114 GGAAATATCCAGTTACCATTCTGGATTTTATTGTGCCTGGTGGAGCATGTGATTTGAATG 1173
Query 1121 TCACTCCCGATAAAAGAAAGGTGTTCTTTTCTGATGAGAATTCTGTTATCGGTTCTCTGA 1180
|||| ||||||||||||||||||||||||||||| |||| |||||||||||||||| |||
Sbjct 1174 TCACGCCCGATAAAAGAAAGGTGTTCTTTTCTGACGAGACTTCTGTTATCGGTTCTTTGA 1233
Query 1181 GGGAAGGTCTGAACGAGATATATTCCTCTAGTAATGCGTCTTACATTGTTAATAGGTTTG 1240
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 1234 GGGAAGGTCTGAACGAGATATATTCCTCCAGTAATGCGTCTTATATTGTTAATAGGTTCG 1293
Query 1241 AGGAGAATTCTGAGCAACCAGATAAGGCTGGAGTTTCATCTTTTCAGGAGAAATCAAATC 1300
|||||||||| |||||||||||||||||||||||||| || |||||| ||||||||||||
Sbjct 1294 AGGAGAATTCGGAGCAACCAGATAAGGCTGGAGTTTCGTCGTTTCAGAAGAAATCAAATC 1353
Query 1301 TTATGTCAAAAGAAATTGTTCTGGATGTCATTTCTAGAACAAGACAAGGGGAAGCTATTG 1360
|| ||||| ||| || ||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 1354 TTTTGTCAGAAGGGATAGTTCTGGATGTCAGTTCTAAAACAAGACTAGGGGAAGCTATTG 1413
Query 1361 CAG-GGGAAAA-CCAATCCTCAATGGAGGCTGAGATTGATAATAGTTCGCCAATGGAGAA 1418
|| ||||| || ||||| || ||||| ||| ||||||||||||||||||||||||||
Sbjct 1414 -AGAAAGAAAATCC-ATCCTTAAGGGAGGTTGAAATTGATAATAGTTCGCCAATGGAGAA 1471
Query 1419 GTTTAAGTTTGACATCAAGGCACGTGGGACTAAGAAAGGGGAAGGTTCTTTATCAGTCCA 1478
|||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1472 GTTTAAGTTTGAGATCAAGGCATGTGGGACGAAGAAAGGGGAAGGTTCTTTATCAGTCC- 1530
Query 1479 TGATGTGTCCCTAACTGTAACTCACCTTGACAAGGCAACTAGCAAAGGTTTGCCTCACTT 1538
| || | ||||||||||||||||||| || ||||||||||||||||||| ||
Sbjct 1531 --A--TG------A-TGTAACTCACCTTGACAAGACACCTAGCAAAGGTTTGCCTCAGTT 1579
Query 1539 AAATGTGA-TGGAGAAAGTCACCAATGCAAGTAAAGACTTGGGCAGTCGCTCTACCTTTT 1597
|||||||| | |||||||| || ||||||||||||||||| |||| ||||||| ||||
Sbjct 1580 AAATGTGACT-GAGAAAGTTACTGATGCAAGTAAAGACTTGAGCAGCCGCTCTAGCTTTG 1638
Query 1598 CCCAGTCAACTTTGAATACTTTTGTTACCATGGGAAAAAGAAAACATGAAAACATAAGCA 1657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1639 CCCAGTCAACTTTGAATACTTTTGTTACCATGGGAAAAAGAAAACATGAAAACATAAGCA 1698
Query 1658 CCATCCTCTCTGAAGTACCTGTTCTCAGAAACCAAACTTCTAGTTATCGTGTGGAGAAAA 1717
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1699 CCATCCTCTCTGAAACACCTGTCCTCAGAAACCAAACTTCTAGTTATCGTGTGGAGAAAA 1758
Query 1718 GCAAATTTGAAGTTCGTGCTTTGGCTTCAAGATGTCTTATGGAAGGCGATCAAGTAGATG 1777
||||||||||||||||||| || |||||||| ||||| |||||||||||||| | ||||
Sbjct 1759 GCAAATTTGAAGTTCGTGCCTTAGCTTCAAGGTGTCTCGTGGAAGGCGATCAACTTGATG 1818
Query 1778 GTATGGACATCTCGAAGGAAGATATGACACCAAACGAAATG-GATTCTGAACTAGGCAAT 1836
||||| |||||| ||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 1819 ATATGGTCATCTCAAAGGAAGATATGACACCAAGCGAAA-GAGATTCTGAACTAGGCAAT 1877
Query 1837 CAGATTGCTCCTGGAACACAAACTGATAATACTGAAAGACATGAAAGAGAACATGAAAAG 1896
| |||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||
Sbjct 1878 CGGATTTCTCCTGGAACACAAGCTGATAATGTTGAAAGACATGAGAGAGAACATGAAAAG 1937
Query 1897 CCTATATGTTTTGAAGAACCAACATCAGATAACACAATCACCAAGGGGGATGTGGAAAGA 1956
|||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1938 CCTATAAGGTTTGAAGAACCAACATCAGATAACACACTCACCAAGGGGGATGTGGAAAGG 1997
Query 1957 ATTTCGGAGGACAATCCAGGGTGCAGTCAGCCACTGCGATCTGTGGCCACAGTGCTGGAC 2016
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1998 GTTTCAGAGGACAATCCACGGTGCAGTCAGCCACTGCGATCTGTGGCCACAGTGCTGGAT 2057
Query 2017 TCCCCAGCTCAGTCAACCGGTCCAAAAATGTTTTCCACATTAGAATTTAGTTTCCAAAAC 2076
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2058 TCCCCAGCTCAGTCAACCGGTCCTAAAATGTTTTCCACATTAGAATTTAGTTTCCAAAAC 2117
Query 2077 CTCAGGGA-AAGGAGGTTAGAGAGGCTGTCGAGATTGCAGTCCACAGGTTATGTATCTAA 2135
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2118 CTCA-GGACAAGGAGGTTAGAGAGGCTGTCGAGATTGCAGTCCACAGGTTATGTATCTAA 2176
Query 2136 ATGTATGAATACGCCACGGCCTAAAAAGTGCTTTGCTGCTGCAACATTAGAGTTATCTCA 2195
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 2177 ATGTATGAATACGCCACAGCCTAAAAAGTGCTTTGCCGCTGCAACATTAGAGTTATCTCA 2236
Query 2196 ACCGGATGATGAAGAGCGAAAAGCAAGGGCTTTAGCTGCAGCTACTTCTGAGCTGGAAAG 2255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2237 ACCGGATGATGAAGAGCGAAAAGCAAGGGCTTTAGCTGCAGCTACTTCTGAGCTGGAAAG 2296
Query 2256 GCTTTTTCGAAAAGAGGATTTCAGGAGAATGCAGGTACTCGGGCAATTCAATCTTGGGTT 2315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2297 GCTTTTTCGAAAAGAGGATTTCAGGAGAATGCAGGTACTCGGGCAATTCAATCTTGGGTT 2356
Query 2316 CATCATTGCAAAATTGGAGCGAGATCTGTTCATTGTGGATCAGCATGCAGCCGATGAGAA 2375
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2357 CATCATTGCAAAATTGGAGCGAGATCTGTTCATTGTGGATCAGCATGCAGCTGATGAGAA 2416
Query 2376 ATTCAACTTCGAACATTTAGCAAGGTCAACTGTCCTGAACCAGCAACCCTTACTCCAGCC 2435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2417 ATTCAACTTCGAACATTTAGCAAGGTCAACTGTCCTGAACCAGCAACCCTTACTCCAGCC 2476
Query 2436 TTTGAACTTGGAGCTCTCTCCAGAAGAAGAAGTCACTGTGTTAATGCACATGGATATTAT 2495
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2477 TTTGAACTTGGAACTCTCTCCAGAAGAAGAAGTAACTGTGTTAATGCACATGGATATTAT 2536
Query 2496 CAGGGAAAATGGATTTATTCTAGAGGAGAATCCAAGTGCTCCTCCCGGAAAACACTTTAG 2555
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2537 CAGGGAAAATGGCTTTCTTCTAGAGGAGAATCCAAGTGCTCCTCCCGGAAAACACTTTAG 2596
Query 2556 ACTACGAGCCGTTCCTTATAGCAAGAATATCACCTTTGGGGTCGAAGATCTTAAAGACCT 2615
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2597 ACTACGAGCCATTCCTTATAGCAAGAATATCACCTTTGGAGTCGAAGATCTTAAAGACCT 2656
Query 2616 GATCTCAACTCTAGGAGATAACCACGGTGAGTGTTCGGGTG-TGAGTAGCTACAAAACCA 2674
|||||||||||||||||||||||| || || ||||||| || | ||||||||||||||||
Sbjct 2657 GATCTCAACTCTAGGAGATAACCATGGGGAATGTTCGGTTGCT-AGTAGCTACAAAACCA 2715
Query 2675 GCAAAACAGATTCGATTTGTCCATCACGAGTCCGTGCAATGCTAGCATCCCGAGCATGTA 2734
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2716 GCAAAACAGATTCGATTTGTCCATCACGAGTCCGTGCAATGCTAGCATCCCGAGCATGCA 2775
Query 2735 GATCATCCGTGATGATCGGAGATCCACTTAGAAAAAACGAAATGCAGAAGATAGTAGAAC 2794
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2776 GATCATCTGTGATGATCGGAGATCCACTCAGAAAAAACGAAATGCAGAAGATAGTAGAAC 2835
Query 2795 ACTTGGCAGATCTCGAATCTCCTTGGAACTGCCCGCACGGACGACCAACGATGCGGCATC 2854
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 2836 ACTTGGCAGATCTCGAATCTCCTTGGAATTGCCCACACGGACGACCAACAATGCGTCATC 2895
Query 2855 TTGTGGACTTGACAACTTTACTCACACTACCTGATGACGACAATG--A-TGATGATGATG 2911
|||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||
Sbjct 2896 TTGTGGACTTGACAACTTTACTCACATTACCTGATGACGACAATGTCAATGATGATGATG 2955
Query 2912 ---------CAACCATCTCATTGGCATGAAC--TAAAAAAGTCTTAACGTATTTAGATGT 2960
|||||||||||||||||||||| | |||| ||||||||||||||||||||
Sbjct 2956 ATGATGATGCAACCATCTCATTGGCATGAACACTCAAAA-GTCTTAACGTATTTAGATGT 3014
Query 2961 GAGAATCCTTA-GAGTTAACATTGAGGAACACTCGGTCATAACTAACAATCGTAAATTTA 3019
||||||||||| || |||||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 3015 GAGAATCCTTAAGA-TTAACATTGAGGAACACTCGGTTATAACTA-CAATCGTAAATGTA 3072
Query 3020 ATTTGTTTGCCTTAGTCTATATGATCTTCTTGGTCACAACAGGTAA 3065
| |||| | ||||||||||||||||| |||||||||||||||||
Sbjct 3073 AATTGT---C-TTAGTCTATATGATCTTTTTGGTCACAACAGGTAA 3114
Score = 95.3 bits (51), Expect = 3e-18
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 46 TTGTCTCACCTTCGATTTTGGCGGCAAAACATAAACCCTAAGGGCTTTCGCACTCTC 102
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 72 TTGTCTCACCTTCGATTTTGGCGGCAAAACATAAACCCTAAGGGTTTTCTCACTCTC 128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 152407172834
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5