BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490324
Length=839
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02425.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1269 0.0
> AT4G02425.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; Has 29 Blast hits to 28 proteins
in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr4:1067280-1068785 REVERSE LENGTH=1162
Length=1162
Score = 1269 bits (687), Expect = 0.0
Identities = 799/851 (94%), Gaps = 15/851 (2%)
Strand=Plus/Plus
Query 1 TTTCTGTGATCTATAAAGTTGGTACCTTTAACAATGTCTCAGAAACATCGAGAATCATCA 60
||| |||||||| ||||||| |||||||||||||||||| |||||||| ||| ||||||
Sbjct 90 TTTTTGTGATCTGGAAAGTTGTTACCTTTAACAATGTCTCCGAAACATCTAGAGTCATCA 149
Query 61 CGAAGTTCAATTGAATCTTGCACTTCACAGCTCCTCTCATGGCGCCCATTTCACCGCTCC 120
||||| || |||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 150 CGAAGCTCTATTGAATCATGCACTTCACAGCTTCTCTCATGGCGACCATTTCACCGCTCC 209
Query 121 AAAACCCTAGACTCATCTGACCAACCACCGCAGTCCAATGGGTTTCACTCC---ACTCCC 177
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 210 AAAACCCTAGACTCATCTGACCAACCACCGCAGACCAATGGGTTTCACTCCTTTACTCCC 269
Query 178 AAACGCCCTTGCTTCTCCGATCGATCCACCTCTTTCTCCATCGAAGCTATGAGCCGTCTC 237
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 270 AAACGCCCTTGCTTCTCCGATCGATCCACTTCTTTCACCATCGAAGCTATGAGCCGTCTC 329
Query 238 TCACTCGCCGACGACGACAATGGAGGGAAGACGTTATCAGCTTCGAATTACAGCAACAGA 297
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 330 TCACTCGCCGACGACGACAATGGAGGGAAGACATTATCAGCTTCCAATTACAGCAATAGA 389
Query 298 GGAAGTCTCCGGTTAGTAGCGAGGAAGCGACGGCGTCGTAATTCGAGATCGGTGTCTGGT 357
|||||| || ||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 390 GGAAGTTTCAGGTTAGTAGCGAGGAAGCGGCGGCGGCGTAATTCGAGATCGGTGTCTGGT 449
Query 358 CGGAGTAGTGATCGGAGTGGGACTCGGAGATGTTGCTCCATTGGAGCTCATGGGACTTGC 417
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 450 CGGAGTAGTGATCGGAGTGGGACTCGGAGATGTTGCTCCATTGGTGCTCATGGGACTTGT 509
Query 418 TCCGATTTGCCTTTCGCTGTTGGTACAGATTCAAGTGGAGAGCTTTTTGGTGAAGCGAAT 477
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 TCGGATTTGCCTTTCGCTGTTGGTACAGATTCAAGTGGAGAGCTTTTTGGTGAAGCGAAT 569
Query 478 TGGGCTTCTGATGTGAGTGAGGCGGCGAGGAATTCGCGTAGAGA---------TTCCGGC 528
||||||||||||||||||||||||||||||||||| || ||||| ||| ||
Sbjct 570 TGGGCTTCTGATGTGAGTGAGGCGGCGAGGAATTCACGGAGAGAGCGGCGAGATTCTGGT 629
Query 529 GGAGAGAAGGAAGCTTCTGGTGGATTTGGATTCGCTATTGGAGTTGATCCAATGGGGAAT 588
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 630 GGAGAGAAGGAAGCTTCTGGTGGATTTGGATTTGCTAATGGAGTTGATCCAATGGGGAAT 689
Query 589 GAATCTGGGTATGGGAGTGAACCTGGTTACAGAGGTGATGCTGAGTTTGGTTATGGTGAT 648
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 690 GAATCTGGGTATGGGAGTGAGCCTGGTTACAGAGGTGATGCTGAGTTTGGCTATGGTGAT 749
Query 649 GAATTCGATGATGAAGAAGAAGATGCCAAGCCATTGTTTTGGGGAGATACAGATTCAACA 708
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 750 GAATTTGATGATGAAGAAGAAGATGTCAAGCCATTGTTTTGGGGAGATACAGATTCAACA 809
Query 709 ATGGGGATGTCTGGTGAGACGAAATTCTCAGATACTAAACCTCAATTCAGGTGCCGGCGA 768
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 810 ATGGGGATGTCTGGTGAGACGAAATTCTCAGATAGTAAACCTCAATTCAGGTGCCGGCGA 869
Query 769 AGAAGACAGCATATTGACTACAAAACTGTTGACTCCATGAGATGAACATAACAAAGACAT 828
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 AGAAGACAACAT---GACTACAAAACTGTTGACTCCATGAGATGAACATAACAAAGACAT 926
Query 829 TACTATTCAGT 839
|||||||||||
Sbjct 927 TACTATTCAGT 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40890595658
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5