BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490334

Length=664
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02370.1 | Symbols:  | Protein of unknown function, DUF538 |...   737    0.0  


> AT4G02370.1 | Symbols:  | Protein of unknown function, DUF538 
| chr4:1042338-1043206 FORWARD LENGTH=869
Length=869

 Score =  737 bits (399),  Expect = 0.0
 Identities = 485/523 (93%), Gaps = 20/523 (4%)
 Strand=Plus/Plus

Query  62   aaaCCCAAATGTCTCATCTCCCGATTTTAATCGCTTC-TTTACTCTTCCTCTCTTCACT-  119
            ||||||||||||||| ||||||||||||||||||||| | | ||||||||||||||||| 
Sbjct  113  AAACCCAAATGTCTCGTCTCCCGATTTTAATCGCTTCGTGT-CTCTTCCTCTCTTCACTC  171

Query  120  --CGCCGCCG-C--CATCGCCGCCGAATCGGATACTCCGACGGCGTATTCACTCCTCCAA  174
              |||||||| |  || |||||||||||| |||||||||||||| |||||||||||||||
Sbjct  172  ACCGCCGCCGTCGTCACCGCCGCCGAATCCGATACTCCGACGGCTTATTCACTCCTCCAA  231

Query  175  AGCTACAACTTCCCCGTCGGAATCCTTCCAAAAGGAGTCGTAGCTTATGATTTAGACACA  234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  232  AGCTACAACTTCCCCGTCGGAATCCTTCCAAAAGGAGTCGTAGCTTATGATTTAGACACA  291

Query  235  ACAACAGGAAAATTCCATGCGTATTTCAACGATTCATGTAGCTTCTCTCTTGTGGGTTCT  294
            |||||||| ||||||||||||||||||||||||||||||||||||  |||||| ||||||
Sbjct  292  ACAACAGGCAAATTCCATGCGTATTTCAACGATTCATGTAGCTTCAATCTTGTTGGTTCT  351

Query  295  TACAAATTGAATTACAAATCAACAATCAGTGGTTACATCTCCGAGAACAAGCTCAAGAAA  354
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  352  TACCAATTGAATTACAAATCAACAATCAGTGGTTACATCTCCGAGAACAAGCTCAAGAAA  411

Query  355  TTGACTGGTATTAAAGTCAAAGTTTTGTTCTTGTGGCTTAACATCGTCGAGGTTATTAGA  414
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  412  TTGACTGGTGTTAAAGTCAAAGTTTTGTTCTTGTGGCTTAACATCGTCGAGGTTATTAGA  471

Query  415  AACGGAGACGAGATGGAGTTTTCCGTTGGGATCACATCGGCGAATTTCGCGATCCAAGAG  474
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  472  AACGGTGACGAGATGGAGTTTTCCGTTGGGATCACATCGGCGAATTTCGCGATCCAAGAG  531

Query  475  TTTTTGGAATCGCCTCAGTGTGGGTGTGGATTTGAGTGCAAGGAATCAAAAT----C--G  528
            ||||||||||||||||||||||| ||||| |||||||||||||| || ||||    |  |
Sbjct  532  TTTTTGGAATCGCCTCAGTGTGGTTGTGGCTTTGAGTGCAAGGATTCGAAATTGGACATG  591

Query  529  A--GA-A-A--CCCTTTTGTTTCTTCGTCTTGAATTTGaaaaa  565
            |  || | |  ||||||| ||||||||||||||| ||||||||
Sbjct  592  ATTGAGAGAATCCCTTTTCTTTCTTCGTCTTGAAATTGAAAAA  634


 Score = 65.8 bits (35),  Expect = 5e-10
 Identities = 42/45 (93%), Gaps = 2/45 (4%)
 Strand=Plus/Plus

Query  619  AAAAGAAAAG-TAATAGAAGGGAGATGTGAACATTGTGAAGTGAA  662
            |||||||||| || | |||||||||||||||||||||||||||||
Sbjct  788  AAAAGAAAAGATACT-GAAGGGAGATGTGAACATTGTGAAGTGAA  831



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32099619933


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5