BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490335
Length=563
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02360.1 | Symbols: | Protein of unknown function, DUF538 |... 789 0.0
> AT4G02360.1 | Symbols: | Protein of unknown function, DUF538
| chr4:1041142-1041733 FORWARD LENGTH=592
Length=592
Score = 789 bits (427), Expect = 0.0
Identities = 507/545 (93%), Gaps = 7/545 (1%)
Strand=Plus/Plus
Query 21 TAAAGAACCCATGTCGCCATACGCGAATACTTGTACTATCATCTTCTTTCTTCTATTCTG 80
||||||| ||||||||| | |||||||||||||| ||||| ||||| | |||||||||
Sbjct 29 TAAAGAA-CCATGTCGCTAGACGCGAATACTTGTTCTATCGTCTTC--T-TTCTATTCT- 83
Query 81 T-ACCGTCTCTTTCGCCGTCCCCGACCAAAAGCCAACCGCTTACGACGCCGTGAAACGCT 139
| || ||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||
Sbjct 84 TCACTGTCTCTTTCGCCGTCTCCGGCCAAAAGCCAACCGCTTACGACGCCGTCAAACTCT 143
Query 140 ATAACTTACCACCCGGAATCCTACCAAATGGCGTTATAGACTACGAGCTTAACCCAAAAA 199
||||||||||||| |||||||| ||||| || || | ||||| ||||||||||||||||
Sbjct 144 ATAACTTACCACCAGGAATCCTCCCAAAAGGAGTGGTTGACTATGAGCTTAACCCAAAAA 203
Query 200 CCGGCGATTTCAAAGTTTACTTCAATGACACGTGTGAATTCACCATCCAATCCTACCAGC 259
| ||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 CAGGCAACTTCAAAGTCTACTTCAATGACACGTGTGAATTCACCATCCAATCCTACCAGC 263
Query 260 TCAAGTACAAATCAACTATCTCCGGCGTTATATCTCCCGGTCACGTCAAGAATCTGAAAG 319
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 264 TCAAGTACAAATCAACTATCTCCGGCGTTATATCACCCGGTCATGTCAAGAATCTGAAAG 323
Query 320 GCGTTAGTGTTAAAGTTCTTTTCTTCTGGGTTAATATTGCTGAAGTGTCTCTTGACGGCG 379
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 GAGTTAGTGTTAAGGTTCTTTTCTTCTGGGTTAATATTGCTGAAGTGTCTCTTGACGGCG 383
Query 380 CTGATCTCGATTTCTCCGTCGGAATCGCGTCGGCGAGTTTTCCGGCGGCTGATTTTGAAG 439
| |||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 384 CCGATCTCGACTTCTCCGTCGGAATCGCGTCGGCGAGTTTTCCGGCTGCTAATTTTGAAG 443
Query 440 AGAGTCCTCAGTGTGGTTGTGGGTTTGATTGTAATAATGGGCTTTTATTTTCTTCTTGAA 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 AGAGTCCTCAGTGTGGTTGTGGGTTTGATTGTAATAATGGGCTTTTATTTTCTTCTTGAA 503
Query 500 TCTGTTGGGCCTTATGTTGTACTGAATAAAAA-TGCCCTTCTCTTATGACTGGCTTATGA 558
||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 504 TCTGTTGGGCCTTGTGTTGTACTGAATAAAAAATGCCCTTCTCTTATGATTGGCTTATGA 563
Query 559 GTATT 563
|||||
Sbjct 564 GTATT 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27025971086
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5