BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490336
Length=2484
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02350.1 | Symbols: SEC15B | exocyst complex component sec15... 2067 0.0
> AT4G02350.1 | Symbols: SEC15B | exocyst complex component sec15B
| chr4:1038114-1040774 FORWARD LENGTH=2610
Length=2610
Score = 2067 bits (1119), Expect = 0.0
Identities = 1196/1233 (97%), Gaps = 5/1233 (0%)
Strand=Plus/Plus
Query 1 TCTTCTTCGCTGTAACGCTTTTTACCTAATCGGAGA-GAAACAATGCAATCGGCGAAAGG 59
||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 1 TCTTCTTCGCTGTAACGCTTTATACCTAATCGGAGATAAAACAATGCAATCGTCGAAAGG 60
Query 60 ACGGCGGAAAGTTGGCTCCACAACCGCCGGAACCGGTATAGACTCGGCGGAGAAGCTTGA 119
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||
Sbjct 61 ACGGCGGAAAGTTGGCTCCACAACCGCCGGAGCCGGTATAGATTCGGCGGAGAAGCTCGA 120
Query 120 CGAACTCTTGATATCGTCTGCGATTTGTAACGGTGAAGATTTAGGACCATTTGTTCGGAA 179
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGAGCTCTTGATATCGTCTGCCATTTGTAACGGTGAAGATTTAGGACCATTTGTTCGGAA 180
Query 180 AACTTTCGGTACAGGGAAACCAGAGACTCTTCTTCATCATCTCAAGTTTTTCGCACGATC 239
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 AACTTTCGGTACAGGGAAACCAGAGACTCTTCTTCACCATCTCAAGTTTTTCGCACGATC 240
Query 240 TAAAGAATCAGAGATCGAAGAGGTATGCAAAGCTCACTATCAAGACTTTATTCACGCCGT 299
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 241 TAAGGAATCAGAGATCGAAGAGGTATGTAAAGCTCACTATCAAGACTTTATCCACGCCGT 300
Query 300 AGACGATCTTAAATCGCTTCTCTCAGATGTTGAATCGCTTAAATCTGCGCTTTCCGATTC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGACGATCTTAAATCGCTTCTCTCAGATGTTGAATCGCTTAAATCTGCGCTTTCCGATTC 360
Query 360 AAACTCTAAACTCCAATCTGTTGCGGCGCCGCTTCTTTCGTCTCTTGATTCGCTTGTTGA 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 AAACTCTAAACTCCAATCTGTTGCGGCGCCGCTTCTTTCGTCTCTCGATTCGCTTGTTGA 420
Query 420 GGCTCAGACTGTGTCTAAGAACGTTGATCTGGCGATTGGAGCGGTGACTCATTGTGTTCG 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 GGCTCAGACTGTGTCTAAGAACGTCGATCTGGCGATTGGAGCGGTGACTCATTGTGTTCG 480
Query 480 TGTTATGGAACTTGTTTCTCGAGCTAATCAGCATCTTCAGAGCGGTAACTTT-TACATGG 538
||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 481 TGTTATGGAACTTGTCTCTCGAGCTAATCAGCATCTTCAGAGCGGTAA-TTTCTACATGG 539
Query 539 CGTTGAAGTGTGTGGACTCGATTGAGAGTGATTTCATGGAGAAAACTCCTTCGTCAACGC 598
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGTTGAAATGTGTGGACTCGATTGAGAGTGATTTCATGGAGAAAACTCCTTCGTCAACGC 599
Query 599 TGAAACGGATGCTGGAGAATAGGATTCCGGCGATTCGATCTTATGTGGAGAGGAAAGTTA 658
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 600 TGAAACGGATGCTTGAGAATAGGATTCCGGCGATTCGATCTTATGTGGAGAGGAAAGTGA 659
Query 659 ATAAGGAGTTTGGAGATTGGTTGGTTGAGATCCGTGTTGTGAGTCGGAATTTAGGTCAGT 718
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 660 ATAAGGAGTTTGGAGATTGGTTGGTTGAGATCCGTGTGGTGAGTCGGAATTTAGGTCAGT 719
Query 719 TGGCTATTGGTGAAGCTTCTGCGGCTCGTCAGCGAGAGGAAGAGCTCAGGATCAAGCAGA 778
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 720 TGGCTATTGGTGAAGCTTCCGCGGCTCGTCAGCGAGAGGAGGAGCTCAGGATCAAGCAGA 779
Query 779 GGCAAGCGGAGGAGCAGAGCAGACTCAGTCTACGCGATTGCGTTTATGCGCTAAACGAAG 838
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 780 GACAAGCGGAGGAGCAGAGTAGACTTAGTCTACGCGATTGCGTTTATGCGCTAAACGAAG 839
Query 839 AAGAGGATGATGAATTTGGGTCTGGTCATGAAGGCAGCGATGGTGGTAGTTCCGGAGGTG 898
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 840 AAGAGGATGATGAATTTGGTTCTGGCCATGAAGGCAGCGATGGTGGTAGTTCCGGAGGTG 899
Query 899 GATTGCTAGGTTTTGATTTGACTCCA-TTGTATAGAGCTTATCACATTCATCAGACACTA 957
|||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||
Sbjct 900 GATTGCTAGGTTTTGATTTGACACCACTT-TATAGAGCTTATCACATTCATCAGACACTA 958
Query 958 TCTCTTGGAGATAGTTTTAAGCAGTACTATTATAATAATAGGGATCTTCAGCTTACCTCT 1017
|||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 959 TCTCTTGGGGATACTTTTAAGCAGTACTATTATAACAATAGGGATCTTCAGCTTACCTCT 1018
Query 1018 GACTTCCAGATTGCTGGGTTTTTCATAGTAGAGGATAGAGTTTTAAGGACTGGAGGAGGG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GACTTCCAGATTGCTGGGTTTTTCATAGTAGAGGATAGAGTTTTAAGGACTGGAGGAGGG 1078
Query 1078 TTGATTTCGAAGCTGGAAGTGGAGACTTTGTGGGATACTGCTGTTACTAAGATGTGTGCT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTGATTTCGAAGCTGGAAGTGGAGACTTTGTGGGATACTGCTGTTACTAAGATGTGTGCT 1138
Query 1138 GTGTTGGAGGATCAGTTCTCTAGAATGCAGACGGCTAATCATCTCTTGCTGATTAAGGAT 1197
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1139 GTGTTGGAGGATCAGTTCTCTAGAATGCAGACGGCTAATCATCTCTTACTGATTAAGGAT 1198
Query 1198 TATGTGAGCTTGTTAGGGGTGAGTCTACGCAGG 1230
|||||||||||||| ||||||||||||||||||
Sbjct 1199 TATGTGAGCTTGTTGGGGGTGAGTCTACGCAGG 1231
Score = 1973 bits (1068), Expect = 0.0
Identities = 1195/1258 (95%), Gaps = 2/1258 (0%)
Strand=Plus/Plus
Query 1227 CAGGGACAAGTATCATGAGTTGTTACTATCTGATTGCCGTAAACAGATCACAGAAGCTTT 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 CAGGGACAAGTATCATGAGTTGTTACTATCTGATTGCCGTAAACAGATCACAGAAGCTTT 1335
Query 1287 ATCAGCTGATAAGTTTGAGCAGATGTTGATGAAGAAAGAGTATGAATATTCCATGAATGT 1346
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1336 ATCAGCAGATAAGTTTGAGCAGATGTTGATGAAGAAAGAATATGAGTATTCCATGAATGT 1395
Query 1347 GCTCTCTTTCCAGTTACAAACATCAGATATAGTACCAGCATTCCCTGTCATTGCTCCATT 1406
||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct 1396 GCTCTCTTTCCAGTTACAAACATCAGAAATAGTACCGGCATTCCCTTTCATTGCTCCATT 1455
Query 1407 TTCGACCACCATCCCAGATTGTTGCCGAATTGTGCGGTCTTTTATCGAGGATTCGGTTAG 1466
|||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1456 TTCGACCACCGTCCCAGATTGTTGCCGGATTGTGAGGTCTTTTATCGAGGATTCGGTTAG 1515
Query 1467 TTTCATGTCTCACGGAGGTCAGCTTGATTTCTATGATGTAGTGAAGAAGTATCTGGATAG 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 TTTCATGTCTCACGGAGGTCAGCTTGATTTCTATGATGTAGTGAAGAAGTATCTGGATAG 1575
Query 1527 ACTTCTAGGCGAGGTTCTTGACGAGGCTCTGTTGAAGCTGATTAACACGTCGGTTCATGG 1586
||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct 1576 GCTTCTAGGCGAGGTTCTCGATGAGGCTCTGTTGAAGCTGATTAGCACGTCGGTTCATGG 1635
Query 1587 AGTTCCTCAGGCAATGCAAGTTGCAGCAAACATGGCCGTGTTTGAGCGTGCTTGCGATTT 1646
|||| |||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1636 AGTTTCTCAGGCAATGCAAGTTGCAGCAAACATGGCCGTATTTGAACGAGCTTGCGATTT 1695
Query 1647 CTTCTTCCGTCACGCTGCACATCTTTCAGGAGTTCCTTTGAGAATGGCGGAGAGAGGTAG 1706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 CTTCTTCCGTCACGCTGCACATCTTTCAGGAGTTCCTTTGAGAATGGCGGAGAGAGGTAG 1755
Query 1707 GAGGCATTTCCCATTGACCAAATCTCAAAACGCTGCAGAAGATACACTCTCAGGAATGCT 1766
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1756 GAGGCATTTCCCATTGACGAAATCTCAAAACACTGCAGAAGATACACTCTCAGGAATGCT 1815
Query 1767 TAAGAAGAAGGTAGATGGTTTCATGACGTTGCTCGAGAATGTCAATTGGACAAGTGACGA 1826
|||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 1816 TAAGAAGAAGATAGATGGTTTCATGACATTACTCGAGAATGTCAATTGGACAAGCGACGA 1875
Query 1827 TATTCCACAAGGTGGGAATGAGTACATGAACGAAGTGTTGATGTACTTGGAAACTTTGGT 1886
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1876 TATACCACAAGGTGGGAATGAGTACATGAACGAAGTGTTGATCTACTTGGAAACTTTGGT 1935
Query 1887 TTCCACTGCGCAACAGATATTACCCGCTAAAGTCTTGAAAAGGGTTTTGCGCGATGTCAT 1946
|||||| || |||||||| |||||||||||||||||||||||||||||||| |||||| |
Sbjct 1936 TTCCACCGCACAACAGATCTTACCCGCTAAAGTCTTGAAAAGGGTTTTGCGTGATGTCCT 1995
Query 1947 TGCTCACATTTCTGAGAAAATCGTTGGAACGTTATGCGGAGATCTAGTAAAAAGATTGAG 2006
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1996 TGCTCACATTTCTGAGAAAATCGTTGGAACGTTATGCGGGGATCTAGTAAAAAGATTGAG 2055
Query 2007 CATGGCTGCAATCAAAGGACTTGATGTGGATATTCAGTTGCTGGACTCGTTTACAGAGAA 2066
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2056 CATGGCTGCAATCAAAGGACTTGATGTGGATATTCAGTTGTTGGACTCGTTTACAGAGAA 2115
Query 2067 TCTAACTCCATTTCTCACAGATAAAGAAGCGAGAGAGATGAAAAAAGCATTCATCGAGAT 2126
||||||||||| ||||| ||||||||||| ||||||||||||||||| || |||||||
Sbjct 2116 CCTAACTCCATTGCTCACGGATAAAGAAGCAAGAGAGATGAAAAAAGCGTTTGTCGAGAT 2175
Query 2127 AAGACAGATGATCAATTTGCTTCTGAGTAGTCACCCTGAGAATTTCGTTAACCCGGTTAT 2186
|||||||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||
Sbjct 2176 AAGACAGATGATCAATTTACTTCTGAGTAGTCATCCTGAGAATTTTGTAAACCCGGTGAT 2235
Query 2187 CAGAGAAAGAAGCTACAATGCCTTGGATTACCGGAAAGTTGCAACAGTTTCAGAGAAATT 2246
||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||
Sbjct 2236 CAGAGAAAGAAGCTACAATGCTTTGGATTACCGGAAAGTAGCCACGGTTTCAGAGAAATT 2295
Query 2247 CAGAGACCCATCAGATAGTATTTTCGGGACTTTTGGAACAAGAGGATCGAGGCAAAACCC 2306
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2296 CAGAGATCCATCAGATAGTATTTTCGGGACTTTTGGAACAAGAGGGTCGAGGCAAAACCC 2355
Query 2307 GAAGAATAAATCGTTAGATGCGTTGATAAAGAGACTGAAAGATGTGAGCTGATGATGTAT 2366
|||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 2356 GAAGAACAAATCTTTAGATGCGTTGATAAAGAGATTGAAAGATGTGAGCTGATGATGGAT 2415
Query 2367 CCAGAGCACAAACCCAAAGCGTAAGTACGATCCCGTTCTTGGTGTTAATTATATGATTGC 2426
|| |||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 2416 CCC-AGCACAAACCCAAAACGTAAGTACGATCCCGTCCTTTGTGTTAATTATATGATTGC 2474
Query 2427 TTTATATGTCATTGTTGATGATTCGTTGGGTCTCTCAGAAAGAAAGGCaaaaaaaaaa 2484
||| ||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 2475 TTTGTATTTCATTGTTGATGATTCGTTGG-TCTCTCAAAAAGAAAGGCAAAAAAAAAA 2531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123260178951
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5