BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490337
Length=1045
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02340.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1679 0.0
> AT4G02340.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:1035681-1037615 FORWARD LENGTH=1228
Length=1228
Score = 1679 bits (909), Expect = 0.0
Identities = 981/1017 (96%), Gaps = 0/1017 (0%)
Strand=Plus/Plus
Query 1 AAGAAGCAATGGAGAAGATAGAGCACACGACGGTTTCTACCAATGGCATAAACATGCATG 60
|||||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||
Sbjct 34 AAGAAGCAATGGAGAAGATAGAGCACACGACGATATCTACCAATGGTATTAACATGCATG 93
Query 61 TGGCTTCGATTGGTTCAGGTCCAGTGATCCTCTTCCTCCATGGATTCCCCGATCTCTGGT 120
||||||||||||||||||||||||||||||| ||| ||||||| || |||||||||||||
Sbjct 94 TGGCTTCGATTGGTTCAGGTCCAGTGATCCTATTCGTCCATGGCTTTCCCGATCTCTGGT 153
Query 121 ACTCATGGCGTCACCAGCTTCTCTCCTTCGCCGCCTTAGGTTACCGCGCAATTGCTCCAG 180
|||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||||
Sbjct 154 ACTCATGGCGTCACCAGCTTGTCTCTTTCGCTGCCTTAGGTTACCGCGCAATCGCTCCAG 213
Query 181 ATCTACGCGGTTACGGCGATTCCGATGCGCCGCCGTCTCGTGAATCTTACACCATCCTTC 240
|||| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 ATCTTCGAGGATACGGCGATTCCGATGCGCCGCCGTCTCGTGAATCTTACACCATCCTTC 273
Query 241 ATATCGTCGGAGACCTCGTCGGATTACTGAATTCACTCGGTGTTGATCGGGTTTTCCTCG 300
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 274 ATATCGTCGGAGACCTCGTCGGATTACTGGATTCGCTCGGTGTTGATCGGGTTTTCCTCG 333
Query 301 TCGGTCACGATTGGGGAGCAATTGTTGCGTGGTGGCTCTGTATGATCAGGCCTGATCGAG 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 334 TCGGTCACGATTGGGGAGCAATTGTTGCGTGGTGGCTTTGTATGATCAGGCCTGATCGAG 393
Query 361 TCAACGCGTTGGTCAACACTAGCGTTGTGTTTAATCCGAGGAATCCTTCTGTGAAACCTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 TCAACGCGTTGGTCAACACTAGCGTTGTGTTTAATCCGAGGAATCCTTCTGTGAAACCTG 453
Query 421 TTGATGCGTTTAGGGCTTTGTTTGGCGATGATTACTACATCTGCAGGTTTCAGGAGCCTG 480
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 454 TTGATGCGTTTAGGGCTTTGTTCGGCGATGATTACTACATTTGCAGGTTTCAGGAGCCTG 513
Query 481 GAGAGATCGAAGAGGACTTTGCTCAAGTTGATACAAAGAAGTTAATAACCAGATTTTTCA 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 514 GAGAGATCGAAGAGGACTTTGCTCAAGTTGATACAAAAAAGTTAATAACCAGATTTTTCA 573
Query 541 TTTCGCGTAACCCACGTCCACCTTGCATTCCAAAGTCAGTTGGTTTCAGAGGTTTACCTG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 CTTCGCGTAACCCACGTCCACCTTGCATTCCAAAGTCAGTTGGTTTCAGAGGTTTACCTG 633
Query 601 ATCCACCTTCTTTGCCTGCTTGGCTAACCGAAGAAGATGTCAGTTTCTACGGAGACAAGT 660
|||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||
Sbjct 634 ATCCACCTTCTTTGCCCGCTTGGCTCACCGAACAAGATGTCAGGTTCTACGGAGACAAGT 693
Query 661 TTAGCCAAAAAGGCTTCACCGGTGGACTAAACTACTATCGCGCCCTGAACCTAAGCTGGG 720
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 694 TTAGCCAAAAAGGCTTCACCGGTGGGCTAAACTACTATCGCGCCCTGAACCTAAGCTGGG 753
Query 721 AACTAACGGCTCCATGGGCCGGTCTACAAATCAAGGTCCCTGTGAAATTCATCGTGGGTG 780
||||||| ||||||||| |||||||||||||||| ||||||||||||||||| |||||||
Sbjct 754 AACTAACAGCTCCATGGACCGGTCTACAAATCAAAGTCCCTGTGAAATTCATAGTGGGTG 813
Query 781 ATCTAGACATAACATACAATATCCCCGGAACGAAGGAATACATACATGAAGGTGGTTTGA 840
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 814 ATCTAGACATAACATACAATATCCCCGGAACAAAGGAATACATACATGAAGGTGGTTTGA 873
Query 841 AGAAGCACGTACCGTTTCTACAAGAAGTGGTGGTAATGGAAGGTGTGGGTCACTTCCTCC 900
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 874 AGAAGCACGTACCTTTTCTACAAGAAGTGGTGGTAATGGAAGGTGTAGGTCACTTCCTCC 933
Query 901 ATCAAGAGAAGCCTGACGAGATCACAGACCATATCTATGGCTTCTTCAAGAAATTCAGAA 960
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 934 ATCAAGAGAAGCCTGACGAGGTCACTGACCATATCTATGGCTTCTTCAAGAAATTCAGAA 993
Query 961 CCCGCGAAACCGCATCCTTGTAGTAGTTCTCCGTCTGCACAATGTCAAATTCAAGGT 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 CCCGCGAAACCGCATCCTTGTAGTAGTTCTCCGTCTGCACAATGTCAAATTCAAGGT 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51238829940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5