BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490338
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02330.1 | Symbols: ATPMEPCRB | Plant invertase/pectin methy... 2850 0.0
AT1G02810.1 | Symbols: | Plant invertase/pectin methylesterase... 942 0.0
AT5G04960.1 | Symbols: | Plant invertase/pectin methylesterase... 71.3 3e-11
> AT4G02330.1 | Symbols: ATPMEPCRB | Plant invertase/pectin methylesterase
inhibitor superfamily | chr4:1032413-1035037 FORWARD
LENGTH=1897
Length=1897
Score = 2850 bits (1543), Expect = 0.0
Identities = 1755/1857 (95%), Gaps = 16/1857 (1%)
Strand=Plus/Plus
Query 1 AAACTTTTCCAAATTCATACCaaaaaaaCATTTAATAACACCAAAATCTAC--AGAA-AA 57
||||||||||||| |||||||||||||||||||| ||||| |||||| ||| | || ||
Sbjct 1 AAACTTTTCCAAAATCATACCAAAAAAACATTTAGTAACATCAAAATTTACAAAAAACAA 60
Query 58 ATAAA-ATGCTATCTC-CGAAACTCTTCCTCGTAACActcttcttatctcttcaaacact 115
| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAAACATGCTATCTCTC-AAACTCTTCCTCGTAACACTCTTCTTATCTCTTCAAACACT 119
Query 116 cttcattgcttctcaaaatcttctcccttcttcttcaaactcttcatctACCATCTGCAA 175
|||||||||||||| ||| | ||| |||| |||||||||||||||| ||||| |||||
Sbjct 120 CTTCATTGCTTCTC-AAA-C-TCT-TCTTC--CTTCAAACTCTTCATCAACCATATGCAA 173
Query 176 AACGACACCGGATCCAAAATTTTGCAAATCAGTGTTCCCACAAACATCTCAAGGCGACGT 235
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 174 AACAACACCCGATCCAAAATTCTGCAAATCAGTGTTCCCACAAACATCTCAAGGCGACGT 233
Query 236 TCGCGAATATGGCCGCTTCTCCCTCCGCAAATCGCTAACGCAATCGCAAAAATTCACACG 295
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 234 TCGCGAATACGGCCGCTTCTCCCTCCGCAAATCGCTAACGCAATCGCGGAAATTCACACG 293
Query 296 CACGATTGACAAATACCTCAAACGCAACAATGCCCTACTCTCCCAATCCGCCGTTGGAGC 355
||| ||||||| ||||||||||||||||||||| ||| | || |||||||||||||||||
Sbjct 294 CACCATTGACAGATACCTCAAACGCAACAATGCACTATTATCTCAATCCGCCGTTGGAGC 353
Query 356 TCTCCAAGACTGCCGTTACCTCGCAAGCCTCACAACAGACTATCTCTTAACGTCGTTTGA 415
||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| ||
Sbjct 354 TCTCCAAGACTGCCGTTACCTAGCAAGCCTCACAACAGACTATCTCATAACATCGTTCGA 413
Query 416 CACCGTCAACATCACTACATCATCCAAAACGTTGTCGTTTTCCAAAGCCGACGAAATCCA 475
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GACGGTCAATATCACTACATCATCCAAAACGTTGTCGTTTTCCAAAGCCGACGAAATCCA 473
Query 476 AACACTTCTCTCCGCCGCGTTGACTAACGAGCAAACATGTCTTGACGGAATCAACACCGC 535
||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 474 AACACTTCTCTCCGCGGCTTTGACTAACGAGCAAACATGTCTTGATGGAATCAACACCGC 533
Query 536 AGCTTCCACTTCTTGGACCATACGAAACGGCGTCGCATTGCCTCTAATCAACGACACAAA 595
|||||| |||| ||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 534 CGCTTCCTCTTCATGGACTATACGAAACGGTGTCGCATTGCCTCTAATCAACGACACGAA 593
Query 596 GCTCTTTAGTGTCTCGCTCGCATTATTCACCAAAGGTTGGGTTCCAAAGAAGAAGAAACA 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GCTCTTTAGTGTCTCGCTCGCATTATTCACCAAAGGTTGGGTTCCAAAGAAGAAGAAACA 653
Query 656 AATAGCCGGTTACTCTTGGGCTCATCCGAAGAATACTCACAGTCACACAAAACCATTCCG 715
| ||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 654 AGTAGCCAGTTACTCTTGGGCCCATCCAAAGAACACTCACAGTCACACAAAACCATTCCG 713
Query 716 TCAGTTCCGTAACGGAGCTTTACCGTTAAAGATGACGGAACACACACGCGCCGTTTACGA 775
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TCATTTCCGTAACGGAGCTTTACCGTTAAAGATGACGGAACACACACGCGCCGTTTACGA 773
Query 776 GTCTTTAAGTAGGAGGAAACTGGCAGACGACGACAATGATGTAAACACGGTTCTTGTGAG 835
||||||||| ||||||||||| || |||||||| ||||| ||||||||||| ||||| ||
Sbjct 774 GTCTTTAAGCAGGAGGAAACTCGCTGACGACGATAATGACGTAAACACGGTGCTTGTAAG 833
Query 836 CGACATGGTAACGGTGAACCAAAACGGAACGGGGAATTTCACGACCATAACGGAAGCTGT 895
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CGACATCGTAACGGTGAACCAAAACGGAACGGGGAATTTCACGACCATAACGGAAGCTGT 893
Query 896 TACGGCGGCGCCGAATAAAACTGACGGTACCGCCGGTTATTTCGTTATCTACGTGACGTC 955
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TAATTCGGCGCCGAATAAAACTGACGGTACCGCCGGTTATTTCGTTATCTACGTGACGTC 953
Query 956 AGGTGTTTATGAGGAAAACGTAGTGATTG-CAAAGAACAAAAGATATCTAATGATGATTG 1014
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 954 AGGTGTTTATGAGGAAAACGTAGTGATTGCCAAA-AACAAAAGATATCTAATGATGATTG 1012
Query 1015 GTGACGGAATAAACCGTACGGTGGTTACCGGTAACCGGAATGTTGTCGACGGTTGGACCA 1074
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1013 GTGACGGAATAAACCGTACGGTGGTTACCGGTAACCGGAATGTCGTCGACGGTTGGACCA 1072
Query 1075 CTTTCAACTCCGCCACTTTTGCCGTGACATCGCCGAACTTCGTTGCCGTGAACATGACTT 1134
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1073 CTTTCAACTCCGCCACTTTTGCTGTTACATCGCCGAACTTCGTTGCCGTGAACATGACTT 1132
Query 1135 TCCGAAATACCGCTGGACCAGAGAAGCACCAGGCCGTGGCTATGAGGAGCAGTGCAGATC 1194
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1133 TCCGAAATACCGCTGGACCAGAGAAGCACCAGGCCGTAGCTATGAGGAGCAGTGCAGATC 1192
Query 1195 TCTCGATCTTCTATAGTTGCAGTTTCGAAGCTTATCAAGACACTTTATACACACATTCAC 1254
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 TTTCAATCTTCTATAGTTGCAGTTTCGAAGCTTATCAAGACACTTTATACACACATTCAC 1252
Query 1255 TACGACAATTCTATAGAGAATGTGACATTTATGGTACAGTCGATTTCATATTCGGCAATG 1314
|| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1253 TAAGACAGTTCTATAGAGAATGTGACATTTATGGAACAGTCGATTTCATATTCGGCAATG 1312
Query 1315 CAGCTGTTGTGTTCCAAAACTGTAATCTATATCCAAGACAGCCGATGCAGAACCAGTTTA 1374
||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 1313 CAGCTGTTGTGTTCCAAGACTGTAATCTCTATCCAAGACAACCGATGCAGAACCAGTTCA 1372
Query 1375 ACGCTATTACAGCTCAAGGTCGTACTGATCCGAATCAAAACACAGGAATTTCTATCCACA 1434
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 1373 ACGCTATTACAGCTCAAGGTCGTACTGATCCGAATCAAAACACGGGAATTTCGATTCACA 1432
Query 1435 ATTGTACGATTAAACCAGCAGATGATTTGGTTTCGAGCAACTATACGGTTAAAACGTATT 1494
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1433 ATTGTACGATTAAACCGGCAGATGATTTGGTTTCGAGTAACTATACGGTTAAAACGTATT 1492
Query 1495 TGGGACGACCATGGAAGGAGTATTCACGGACAGTTTTTATGCAATCGTACATAGACGAGG 1554
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1493 TGGGACGACCATGGAAGGAGTATTCACGTACGGTTTTTATGCAATCGTACATAGACGAGG 1552
Query 1555 TTGTTGAACCGGTTGGTTGGAGAGAATGGAACGGAGATTTCGCATTGAGTACGTTGTACT 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 TTGTTGAACCGGTTGGTTGGAGAGAATGGAACGGAGATTTCGCATTGAGTACGTTGTACT 1612
Query 1615 ATGCTGAGTATAACAATACCGGATCCGGTTCAAATACTACAGACCGAGTGGTTTGGCCTG 1674
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |
Sbjct 1613 ATGCTGAGTATAACAATACCGGTTCCGGTTCAAGTACTACAGATCGAGTGGTTTGGCCCG 1672
Query 1675 GTTATCACGTGATTAATTCTACCGATGCGAATAATTTCACGGTCGAGAATTTCTTGTTAG 1734
||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1673 GTTATCATGTGATTAATTCTACGGATGCGAATAATTTCACAGTCGAGAATTTCTTGTTAG 1732
Query 1735 GAGATGGTTGGATGGTTCAAAGTGGTGTACCGTATATTAGCGGTTTACTTTCGTAATTTC 1794
||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 1733 GAGATGGTTGGATGGTTCAGAGTGGTGTACCTTATATTAGTGGTTTACTTTCGTAATTTC 1792
Query 1795 TTGTATTTGATTATTTGTTTTAGCTATTATTATGC--AAATTTTGGTCTTAATTTTG 1849
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1793 TTGTATCTGATTATTTGTTTTAGCTATTATTATGGGTAAATTTTGGTCTTAATTTTG 1849
> AT1G02810.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr1:618265-620480 FORWARD LENGTH=1906
Length=1906
Score = 942 bits (510), Expect = 0.0
Identities = 1279/1637 (78%), Gaps = 105/1637 (6%)
Strand=Plus/Plus
Query 147 tct-tcaaactcttcatctACCATCTGCAAAACGACACCGGATCCAAAATTTTGCAAATC 205
||| |||||||||||| || |||||||||||||| ||||||||||| | |||||||||
Sbjct 91 TCTATCAAACTCTTCA---ACAATCTGCAAAACGACGCCGGATCCAAAGTATTGCAAATC 147
Query 206 AGTGTTCCCACAAACATCTCAAGGCGACGTTC-GCGAATATGGCCGCTTCTCCCTCCGCA 264
|| || |||| | | | |||||| | |||| | |||| ||| | ||||| ||||||
Sbjct 148 CGTTTTTCCAC--ATAGC-CAAGGCAATGTTCAAC-AATACGGCTGTTTCTCTATCCGCA 203
Query 265 AATCGCTAACGCAATCGCAAAAATTCACACGCA-CGATTGACAAATACCTCAAACGCAAC 323
|||||||| ||||||||| |||||| | |||| || | || | ||| |||||||||||
Sbjct 204 AATCGCTATCGCAATCGCGAAAATTTATTCGCACCG-TCGATAGATATATCAAACGCAAC 262
Query 324 AATGC-CCTACTCTCCCAATCC-GCCG-T-T-GGAGCTCTCCAAGACTGCCGTTACCTCG 378
|| | | | || ||| || |||| | | ||||||||||||| ||||||| ||||
Sbjct 263 ---GCTCAT-TTATCTCAA-CCTGCCGTTATCAGAGCTCTCCAAGATTGCCGTTTTCTCG 317
Query 379 CAAGCCTCACAACAGACTATCTCTTAACGTCGTTTGACACCG-T--C-A-ACATCA-C-- 430
| | || |||| || || |||||||||||||| || |||| | | | || ||| |
Sbjct 318 CCGGTCTAACAATGGATTACCTCTTAACGTCGTTCGAAACCGTTAACGACACGTCAGCAA 377
Query 431 -TACATCATCCAAAACGTTGTCGTTTTCCAAAGCCGACGAAATCCAAACACTTCTCTCCG 489
|| || | |||| || |||||||| ||||||||||||| |||||||| ||||| ||||
Sbjct 378 AAACCTCTTTCAAACCGCTGTCGTTTCCCAAAGCCGACGACATCCAAACGCTTCTTTCCG 437
Query 490 CCGCGTTGACTAACGAGCAAACATGTCTTGACGGA-AT-CAAC-ACCGCAGC---TTCCA 543
| ||| ||||||| ||||| || |||||||| ||| | | || |||| | ||||
Sbjct 438 CGGCGCTGACTAATGAGCAGACGTGTCTTGAAGGACTTACCACGGCCGCTTCTTATTCCG 497
Query 544 CTTCTTGGACCATACGAAACGGCGTCGCATTGCCTCTAATCAACGACACAAAGCTCTTTA 603
| | ||||| || ||| ||||||||| |||||||| |||| ||||| ||||||||
Sbjct 498 CCACGTGGACTGTAAGAACCGGCGTCGCTTTGCCTCTCGTCAATGACACGAAGCTCTTGG 557
Query 604 GTGTCTCGCTCGCAT-TATTCACCAAAGGTTGGGTTCCAAAGAAGAAGAAACAAATAGCC 662
| ||||| ||||| | | |||||||||||||||||||||||||||||||||| |||
Sbjct 558 GCGTCTCACTCGC-TCTCTTCACCAAAGGTTGGGTTCCAAAGAAGAAGAAAC---GGGCC 613
Query 663 -GGTTACT-CTTGGGCTCATCCGAAGAATAC---TCA-C-AGTCACACAAAACCATTCCG 715
|||| | ||||||| || ||| || || | ||| | | ||||| |||||||||||
Sbjct 614 GGGTT--TGCTTGGGCCCAACCG-AG-ATCCGGTTCATCGACCCACACTAAACCATTCCG 669
Query 716 TCAGTTCCGTAACGGAGCTTTACCGTTAAAGATGAC-G-GAACACACACGCGCCGTTTAC 773
|| |||||||||||||||| |||||||||||||||| | ||| ||| | ||| ||||||
Sbjct 670 TCTGTTCCGTAACGGAGCTCTACCGTTAAAGATGACAGAGAAAACAAAAGCG--GTTTAC 727
Query 774 GAGTCTTTAAGTAGGAGGAAACTGGCAGAC---GAC-G--ACAATGATGTA-A--AC--- 821
||||| | || || || ||||| || ||| ||| | || ||||| | | ||
Sbjct 728 GAGTCACTCAGCAGAAGAAAACTCGCCGACGGTGACAGTAACGGTGATGGAGACGACGGA 787
Query 822 A-C--GGTTCTTG-TGAGCGACATGGTAACGGTGAACCAAAACGGAACGGGGAATTTCAC 877
| | ||||| || | ||||| || || || |||| |||| ||||||| || ||||||||
Sbjct 788 AGCATGGTTC-TGATAAGCGATATCGTTACCGTGAGCCAAGACGGAACAGGAAATTTCAC 846
Query 878 GACCATAACGGAAGCTGTTA-CGGCGGCGCCGAATAAAACTGACGGTACCGCCGG-TTAT 935
| ||| |||| ||||| || ||||||||||||| || || ||||| | |||||| || |
Sbjct 847 CAACATCACGGCAGCTG-TAGCGGCGGCGCCGAACAACACCGACGGAAGCGCCGGTTTCT 905
Query 936 TTCGTT-ATCTACGTGACGTCAGGTGTTTATGAGGAAAACGTA-GT-GATTGCAAAGAAC 992
|| || ||||| |||||| | || | || || || | || | || || ||||||
Sbjct 906 TT--TTGATCTATGTGACGGCGGGAATCTACGAAGAGTA--TATCTCAATCGCGAAGAAC 961
Query 993 AAAAGATATC-TAATGATGATTGGTGAC-GGAATAAACCGTACGGTGGTTACCGGTAACC 1050
||||| || | | |||||||| |||||| ||| ||| | | |||||||| ||||| ||
Sbjct 962 AAAAGGTA-CATGATGATGATAGGTGACGGGATTAATCAG-ACGGTGGTCACCGG-AAAT 1018
Query 1051 GGAA-TGTTGTCGACGGTTGGACCACTTTCAACTCCGCCACTTTTGCCGTGACATCGCCG 1109
||| || |||||||||||||| |||||||| |||||||| ||||| |||||| | |||
Sbjct 1019 AGAAGCGTCGTCGACGGTTGGACTACTTTCAATTCCGCCACATTTGCTGTGACAGCACCG 1078
Query 1110 AACTTCGTTGCCGTGAACATGACTTTCCGAAATACCGCTGGACCAGAGAAGCACCAGGCC 1169
||||| ||||| |||||||| || ||||| || || || ||||| ||||||||||||||
Sbjct 1079 AACTTTGTTGCGGTGAACATAACGTTCCGGAACACGGCCGGACCGGAGAAGCACCAGGCT 1138
Query 1170 GTGGCTATGA-GGAGCAGTGCAGATCTCTCGATCTTCTATAGTTGCAGTTTCGAAGCTTA 1228
|| || | | ||||| | |||||| |||| |||||||||||||| |||||||| |||||
Sbjct 1139 GTTGC-GTTACGGAGCGGCGCAGATTTCTCAATCTTCTATAGTTGTAGTTTCGAGGCTTA 1197
Query 1229 TCAAGACACTTTATACACACATTCACTACGACAATTCTATAGAGAATGTGACATTTATGG 1288
|||||| || | ||||||||||| ||| |||| || ||||||||||| || | |||||
Sbjct 1198 TCAAGATACACTCTACACACATTCTCTAAGACAGTTTTATAGAGAATGCGATGTCTATGG 1257
Query 1289 TACAGTCGATTTCATATTCGGCAATGCAGCTGTTGTGTTCCAAAACTGTAATCTATATCC 1348
|| |||||||| ||||| || || || || |||||||| |||||||||||| |||| ||
Sbjct 1258 AACGGTCGATTTTATATTTGGAAACGCGGCAGTTGTGTTTCAAAACTGTAATTTATACCC 1317
Query 1349 -AAGACAGCCGATG-CAGAACCAGTTTAACGCTATTACAGCTCAAGGTC-GTACTGATCC 1405
| || | |||||| || || ||||| || ||||| || || ||||| | || |||||||
Sbjct 1318 GAGGA-AACCGATGCCA-AATCAGTTCAATGCTATCACCGCCCAAGGCCGGT-CTGATCC 1374
Query 1406 GAATCAAAACACAGGAATTTCTATCCACAATTGTACGATTAAACCAGCAGATGAT-TTGG 1464
||| || ||||| || | || ||||| || ||||||||||| || || |||||| || |
Sbjct 1375 GAACCAGAACACTGGTACATCAATCCAAAACTGTACGATTAAGCCGGCGGATGATCTT-G 1433
Query 1465 TTTCGAGCAACTATACGGTTAAAACGTATTTGGGACGACCATGGAAGGAGTATTCACGGA 1524
||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||||||| |||
Sbjct 1434 TTTCGAGTAACTATACAGTTAAAACGTATTTGGGTCGACCGTGGAAAGAGTATTCAAGGA 1493
Query 1525 CAGTTTTTATGCAATCGTACATAGACGAGGTT-GTTGAACCGGTTGGTTGGAGAGAATGG 1583
| |||| |||||||||||||| || | | || |||||||||||||||||||||||||||
Sbjct 1494 CGGTTTACATGCAATCGTACATTGATG-GTTTCGTTGAACCGGTTGGTTGGAGAGAATGG 1552
Query 1584 AACGGAGATTTCGCATTGAGTACGTTGTACTATGCTGAGTATAACAATACCGGATCCGGT 1643
||||| ||||| || || ||||| ||||||||||| |||||||||||||||||| ||||
Sbjct 1553 AACGGTGATTTTGCGTTAAGTACATTGTACTATGCAGAGTATAACAATACCGGA-CCGGG 1611
Query 1644 -TCAAATACTACAGACCGAGTGGTTTGGCCTGGTTATCACGTGATTAATTCTACCGATGC 1702
||||| |||||| |||| || ||||||||||| |||||||||||||| || |||||
Sbjct 1612 CTCAAACACTACAAACCGGGTTACATGGCCTGGTTACCACGTGATTAATTCCACTGATGC 1671
Query 1703 -GAATAATTTCACGGTC 1718
| |||||||||||||
Sbjct 1672 AGC-TAATTTCACGGTC 1687
> AT5G04960.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr5:1461907-1463969 FORWARD LENGTH=1933
Length=1933
Score = 71.3 bits (38), Expect = 3e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 1401 GATCCGAATCAAAACACAGGAATTTCTATCCACAATTGTAC 1441
|||||||| ||||||||||||||||||||||||||||||||
Sbjct 1399 GATCCGAACCAAAACACAGGAATTTCTATCCACAATTGTAC 1439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91515593535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5