BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490341
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02290.1 | Symbols: AtGH9B13, GH9B13 | glycosyl hydrolase 9B... 2985 0.0
AT1G02800.1 | Symbols: ATCEL2, CEL2 | cellulase 2 | chr1:613216... 1323 0.0
> AT4G02290.1 | Symbols: AtGH9B13, GH9B13 | glycosyl hydrolase
9B13 | chr4:1002394-1005253 REVERSE LENGTH=1939
Length=1939
Score = 2985 bits (1616), Expect = 0.0
Identities = 1837/1938 (95%), Gaps = 37/1938 (2%)
Strand=Plus/Plus
Query 1 ttttttttCCTCTATAAAAAGCTGAGCCACTTCCTCTGTTTCCCACAAACCAGCTTCTGC 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 6 TTTTTTTTCCTCTATAAAAAGCTGAGCCACTTCCTCTGTTTCCCACAAAGCAGCTTCTGC 65
Query 61 AATCTATTCGTTGGTTGGTTAATAGAAG--ctc--tctc--tc--tc---ctctctcAGA 109
|| ||||||||||||||||||||||||| ||| |||| || || ||||||||||
Sbjct 66 AACCTATTCGTTGGTTGGTTAATAGAAGCTCTCTTTCTCTGTCTGTCTTTCTCTCTCAGA 125
Query 110 GAAATGGCtcttcttcta--tt-ttctt-ct--tcc--t----tcagagtcaccattttc 157
|||||||||||||||||| || ||||| || ||| | |||||||||||||||||
Sbjct 126 GAAATGGCTCTTCTTCTAGTTTCTTCTTCCTCCTCCTATGCCCTCAGAGTCACCATTTTC 185
Query 158 ctgtctttcttcttctttctctgcaatggcttctctta-cc--ctacttcttctcttttc 214
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 186 TTGTCTTTCTTCTTCTTTCTCTGCAATGGCTTCTCTTACCCTACTACTTCTTCTCTTTTC 245
Query 215 AACACACATCACCATCGTCACCACTTGGCCAAGCACAACTACAAAGACGCTCTCACCAAA 274
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 246 AACACCCATCACCATCGTCACCACTTGGCCAAGCACAACTACAAAGATGCTCTCACTAAA 305
Query 275 TCAATCCTCTTCTTTGAAGGCCAAAGGTCTGGGAAACTTCCTTCTAACCAGAGAATGAGT 334
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 306 TCAATCCTCTTCTTTGAAGGCCAAAGGTCAGGGAAACTTCCTTCTAACCAGAGAATGAGT 365
Query 335 TGGAGAAAAGACTCTGGTCTCTCTGATGGCTCTGCTCTTCATGTGGATTTGGTTGGAGGA 394
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TGGAGAAGAGACTCTGGTCTCTCTGATGGCTCTGCTCTTCATGTGGATTTGGTTGGAGGG 425
Query 395 TACTATGATGCAGGAGACAACATCAAATTTGGATTCCCAATGGCATTCACAACCACAATG 454
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 426 TACTATGATGCAGGAGACAATATCAAATTTGGTTTCCCAATGGCATTCACAACCACAATG 485
Query 455 -TTATCATGGAGTGTAATCGAATTTGGTGGTCTCATGAAATCTGAATTACAAAACGCTAA 513
|| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 486 CTT-TCATGGAGTGTAATTGAATTCGGTGGACTCATGAAATCTGAATTACAAAACGCTAA 544
Query 514 AATAGCGATTCGTTGGGCTACTGATTATCTTCTCAAAGCCACTTCA-AGTCCTGATACCA 572
|||||||||||||||||||||||||||||| ||||||||||||||| | ||||| || |
Sbjct 545 AATAGCGATTCGTTGGGCTACTGATTATCTCCTCAAAGCCACTTCACA-ACCTGACACAA 603
Query 573 TTTATGTTCAAGTTGGTGATGCTAATAAAGACCATTCTTGTTGGGAAAGACCAGAAGACA 632
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 604 TCTATGTTCAAGTTGGTGATGCTAATAAAGACCATTCTTGTTGGGAAAGACCTGAAGACA 663
Query 633 TGGATACTGTAAGAAGTGTGTTTAAAGTTGACAAGAACACTCCTGGTTCTGATGTCGCCG 692
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 664 TGGATACTGTAAGAAGTGTGTTTAAAGTTGACAAGAACATTCCTGGTTCTGATGTCGCCG 723
Query 693 CTGAAACCGCCGCCGCTCTAGCCGCAGCCGCTATTGTTTTCAGAAAGTCTGATCCTTCTT 752
||||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||
Sbjct 724 CTGAAACCGCCGCTGCTCTAGCCGCCGCCGCCATTGTATTCAGAAAATCTGATCCTTCTT 783
Query 753 ACTCCAAAGTCCTCCTCAAACGAGCCATCAGGGTTTTTGCATTTGCGGACAAATACAGAG 812
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 784 ACTCCAAAGTCCTCCTCAAACGAGCCATCAGTGTTTTTGCATTTGCGGACAAATACAGAG 843
Query 813 GAACTTATAGTGCAGGATTGAAACCTGATGTTTGTCCATTTTATTGCTCTTACTCTGGTT 872
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 844 GAACTTATAGTGCAGGATTAAAACCTGATGTTTGTCCATTTTATTGCTCTTACTCTGGTT 903
Query 873 ATCAGGATGAATTGTTGTGGGGAGCTGCTTGGTTACAAAAAGCCACAAAGAATTTAAAAT 932
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 904 ATCAGGATGAATTGTTGTGGGGAGCTGCTTGGTTACAAAAAGCGACAAAGAATATAAAAT 963
Query 933 ATTTGAATTACATAAAAATTAATGGACAAATCCTTGGAGCTGCTGAATATGATAACACTT 992
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 964 ATTTGAATTACATAAAAATCAATGGACAAATCCTTGGAGCTGCTGAATATGATAACACTT 1023
Query 993 TTGGTTGGGATAACAAGCACGCTGGAGCCAGAATTCTTCTTACAAAGGCATTTTTGGTTC 1052
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 1024 TTGGTTGGGATAACAAGCACGCTGGTGCCAGAATCCTTCTTACTAAGGCATTTTTGGTTC 1083
Query 1053 AGAATGTGAAGACACTTCATGAGTACAAAGGTCATGCTGATAATTTCATTTGCTCTGTTA 1112
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1084 AGAATGTGAAGACACTTCATGAATACAAAGGTCATGCTGATAATTTCATCTGCTCTGTTA 1143
Query 1113 TTCCTGGAGCTCCTTTCTCTTCTACTCAGTACACCCCAGGTGGATTATTGTTTAAAATGG 1172
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1144 TTCCTGGAGCTCCTTTCTCTTCTACTCAGTATACACCAGGTGGATTATTGTTTAAAATGG 1203
Query 1173 CAGACGCCAACATGCAATATGTGACGTCAACATCGTTCTTGCTCTTAACCTACGCCAAAT 1232
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1204 CAGACGCCAACATGCAATACGTGACGTCAACATCGTTCTTGCTCTTAACCTATGCCAAAT 1263
Query 1233 ACTTAACCTCCGCCAAAACAGTCGTCCATTGCGGTGGCTCCGTCTACACTCCCGGTCGCC 1292
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1264 ACTTAACCTCCGCCAAAACCGTCGTCCATTGCGGTGGCTCCGTCTACACTCCCGGTCGTC 1323
Query 1293 TCCGCTCCATCGCCAAAAGACAGGTGGATTATCTACTTGGAGACAACCCATTAAGAATGT 1352
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1324 TTCGCTCCATCGCCAAAAGACAGGTGGATTATCTTCTTGGAGACAACCCATTAAGAATGT 1383
Query 1353 CTTACATGGTTGGTTACGGTCCGAAATTCCCACGGCGAATCCACCACCGTGGCTCCTCTT 1412
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
Sbjct 1384 CTTACATGGTTGGTTACGGTCCAAAATTCCCACGGAGAATCCACCACCGTGGCTCCTCAT 1443
Query 1413 TACCTTGTGTTGCAAGCCACCCGGCCAAGATCCAATGCCACCAAGGCTTTGCAATCATGA 1472
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1444 TACCTTGTGTTGCAAGCCACCCGGCCAAGATCCAATGCCACCAAGGATTTGCAATCATGA 1503
Query 1473 ACTCTCAATCTCCAAACCCTAACTTCCTTGTTGGTGCAGTCGTTGGTGGTCCGGACCAGC 1532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 ACTCTCAATCTCCAAACCCTAACTTCCTTGTTGGTGCAGTCGTTGGTGGTCCGGACCAGC 1563
Query 1533 ATGATCGCTTCCCGGACGAACGGTCCGATTACGAGCAGTCCGAGCCGGCTACTTACATCA 1592
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1564 ATGATCGCTTCCCAGACGAACGGTCTGATTACGAGCAGTCCGAGCCGGCTACTTACATCA 1623
Query 1593 ATGCACCACTCGTTGGAGCTCTTGCCTACTTCGCTCACGCCTATGGTCAACTCTAGTTTA 1652
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1624 ATTCACCACTCGTTGGAGCTCTTGCCTACTTCGCCCACGCCTATGGTCAACTCTAGTTTA 1683
Query 1653 GTAATGAGTGTGTTAGTTTAAGTAAAAATAAAAATGAAGGAA-TT--ATCTTTGTTTTTA 1709
|||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1684 GTAACGAGTGTGTTAGTTTAAGTAAAAATAAAAATGAAGGAAGTTTTATCTTTGTTTTTA 1743
Query 1710 CTTTTATTTGTTAGTA-TATAGTGGACCGAAAATCGGATCACAAGAGGACATTAGTCCGA 1768
|||||||||||||||| | |||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1744 CTTTTATTTGTTAGTAATGTAGTGGACCGAAAATCGGATCACAAGTGGACATTGGTCCGA 1803
Query 1769 GGGATGGTTTATTTGGTTCGTTATTATATAACGTCAAGTGTAATCTTATCGTGGTTATTA 1828
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1804 GGGATGGTTTATTTGGTTCGTTATAATATAACGTCAAGTGTAATCTTATTGTGGTTATTA 1863
Query 1829 ATGCTATTGTCCTATTAATTGTACTATATCCATGTCGTTAAATTTTG-TATGTTTATGTG 1887
||| ||| ||||||||||| ||||||||||||||||||| ||||| ||||||||| ||
Sbjct 1864 ATGTTATCATCCTATTAATT--ACTATATCCATGTCGTTAATTTTTGATATGTTTATATG 1921
Query 1888 ATTTTTGATATTTTTGGG 1905
|||||| |||||||||||
Sbjct 1922 ATTTTTCATATTTTTGGG 1939
> AT1G02800.1 | Symbols: ATCEL2, CEL2 | cellulase 2 | chr1:613216-616191
REVERSE LENGTH=1764
Length=1764
Score = 1323 bits (716), Expect = 0.0
Identities = 1301/1572 (83%), Gaps = 86/1572 (5%)
Strand=Plus/Plus
Query 107 AGAGAAATGGCtcttcttctattttcttcttccttca-gagtcacca-ttttcctgtctt 164
|||||||||| | || |||| | || |||| ||||| || ||| || ||| || ||||
Sbjct 83 AGAGAAATGG--C-TC-TCTA-TCTC-TCTT-CTTCACGACTCATCACCTTT-CTCTCTT 134
Query 165 tcttctt-ctttctctgcaatggcttctcttaccctacttcttctcttttcAACAC-A-C 221
|| |||| | |||||| |||||||||||| | ||| |||| ||| || | | | |
Sbjct 135 TCATCTTGC-TTCTCTCCAATGGCTTCTCGT--CCT-CTTC--CTC---TC-GCCCTAGC 184
Query 222 AT-CACCATCGTCACCACTTGGCCAAGCACAACTACAAAGACGCTCTCACCAAATCAATC 280
|| ||||||||||||||| ||| ||| ||||| ||||||||||||||| |||| || ||
Sbjct 185 ATCCACCATCGTCACCACCTGGACAACCACAATTACAAAGACGCTCTCTCCAAGTCCATT 244
Query 281 CTCTTCTTTGAAGGCCAAAGGTCTGGGAAA-CTTCCTTCTAACCAGAGAATGAGTTGGAG 339
|||||||| ||||| ||||| || ||||| |||||| | ||||||||||||| ||||||
Sbjct 245 CTCTTCTTCGAAGGTCAAAGATC-CGGAAAGCTTCCTCCAAACCAGAGAATGACTTGGAG 303
Query 340 AA-AAGACTCTGGTCTCTCTGATGGCTCTGCTCTTC-ATGTGGATTTGGTTGGAGGATAC 397
|| | ||||||||||||||||||||||||||| || | ||||||||||| |||||||||
Sbjct 304 AAGCA-ACTCTGGTCTCTCTGATGGCTCTGCTC-TCAACGTGGATTTGGTGGGAGGATAC 361
Query 398 TATGATGCAGGAGACAACATCAAATTTGGATTCCCAATGGCATTCACAACCACAATGTTA 457
|| |||||||| ||||| || || ||||||||||||||||||||||||||||||||| |
Sbjct 362 TACGATGCAGGGGACAATATGAAGTTTGGATTCCCAATGGCATTCACAACCACAATGCTC 421
Query 458 TCATGGAGTGTAATCGAATTTGGTGGTCTCATGAAATCTGAATTACAAAACGCTAAAATA 517
||||||||| |||| || ||||||||||||||||||||||| |||| |||||| |||| |
Sbjct 422 TCATGGAGTTTAATTGAGTTTGGTGGTCTCATGAAATCTGAGTTACCAAACGC-AAAAGA 480
Query 518 -GCGATTCGTTGGGCTACTGA-TTATCTTCTCAAAGCCACTTCA-AGTCCTGATACCATT 574
|| ||||||||||||||||| || ||| ||||||||||||||| | |||||||||||||
Sbjct 481 CGCTATTCGTTGGGCTACTGACTT-TCTCCTCAAAGCCACTTCACA-TCCTGATACCATT 538
Query 575 TATGTTCAAGTTGGTGATGCTAATAAAGACCATTCTTGTTGGGAAAGACCAGAAGACATG 634
|||||||| ||||||||| |||| | |||||| |||||||||| |||||||||||||||
Sbjct 539 TATGTTCAGGTTGGTGATCCTAACATGGACCATGCTTGTTGGGAGAGACCAGAAGACATG 598
Query 635 GATACTGTAAGAAGTGTGTTTAAAGTTGACAAGAACACTCCTGGTTCTGATGTCGCCGCT 694
|| || |||||||||||||||||| |||||||||| ||||||||||||| |||||| |
Sbjct 599 GACACACCAAGAAGTGTGTTTAAAGTCGACAAGAACAATCCTGGTTCTGATATCGCCGGT 658
Query 695 GAAACCGCCGCCGCTCTAGCCGCAGCCGCTATTGTTTTCAGAAAGTCTGATCCTTCTTAC 754
|||| |||||||||||| ||||| || | |||||||||||||| | |||||||||||||
Sbjct 659 GAAATCGCCGCCGCTCTTGCCGCTGCTTCAATTGTTTTCAGAAAATGTGATCCTTCTTAC 718
Query 755 TCCAAAGTCCTCCTCAAACGAGCCATCAGGGTTTTTGCATTTGCGGACAAATACAGAGGA 814
||||| ||||||| |||||||||| | ||||||| |||||||||||||||||||||||
Sbjct 719 TCCAATCACCTCCTCCAACGAGCCATTACGGTTTTTACATTTGCGGACAAATACAGAGGA 778
Query 815 ACTTATAGTGCAGGAT-TGAAACCTGATGTTTGTCCATTTTATTGCTCTTACTCTGGTTA 873
| || |||||||| | || || || ||||||||||| || || ||||||||||| ||
Sbjct 779 CCCTACAGTGCAGG-TCTGGCCCCAGAAGTTTGTCCATTCTACTGTTCTTACTCTGGATA 837
Query 874 TCAGGATGAATTGTTGTGGGGAGCTGCTTGGTTACAAAAAGCCACAAAGAATTTAAAATA 933
||||||||||||||| |||||||||||||||||||||||||| ||||| || || |||
Sbjct 838 TCAGGATGAATTGTTATGGGGAGCTGCTTGGTTACAAAAAGCAACAAATAACCCAACATA 897
Query 934 TTTGAATTACATAAAAATTAATGGACAAATCCTTGGAGCTGCTGAATATGATAACACT-T 992
| | |||||||| ||| ||||||||||||||||||||||| ||| | |||||||| | |
Sbjct 898 TCTCAATTACATCAAAGCTAATGGACAAATCCTTGGAGCTGATGAGTTTGATAACA-TGT 956
Query 993 TTGGTTGGGATAACAAGCACGCTGGAGCCAGAATTCTTCT-TACAAAGGCATTTT-TGGT 1050
|| |||||||||| ||||||| ||| || ||||| ||||| | ||| || | ||| || |
Sbjct 957 TTAGTTGGGATAATAAGCACGTTGGTGCTAGAATCCTTCTCTCCAA-GG-AGTTTCTGAT 1014
Query 1051 TCAGAATGTGAAGACACTTCATGAGTACAAAG-GTCATGCTGATAATTTCATTTGCTCTG 1109
|||||| |||||| ||||| | || ||||||| | |||||||||| ||||||||||||||
Sbjct 1015 TCAGAAAGTGAAGTCACTTGAAGAATACAAAGAG-CATGCTGATAGTTTCATTTGCTCTG 1073
Query 1110 TTATTCCTGGAGC-TCCT-TTCTCTTCTACTCAGTACACCCCAGGTGGATTATTGTTTAA 1167
|| | |||||||| |||| ||| | | | | | |||||| |||||| ||||||| ||
Sbjct 1074 TTCTACCTGGAGCATCCTCTTC-C--CAA-T-A-TACACC--AGGTGGGCTATTGTTCAA 1125
Query 1168 AATGGC--AGACGCCAACATGCAATATGTGACGTCAACATCGTTCTTGCTCTTAACCTAC 1225
|||| ||| || ||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 1126 GATGGGTGAGA-GC-AACATGCAATACGTGACGTCTACATCGTTCTTGCTCTTGACCTAC 1183
Query 1226 GCCAAATACTTAACCTCCGC-CAAAACAGTCG-TCCATTGCGGTGGCTCCGTC-TACACT 1282
||||||||||||||||| || | | | |||| | ||||||||||||||||| | |||
Sbjct 1184 GCCAAATACTTAACCTCTGCTCGCACC-GTCGCTT-ATTGCGGTGGCTCCGTCGT-CAC- 1239
Query 1283 CCCGGTC-GCCTCCGCTCCATCGCCAA-AAGACAGGTGGATTATCTACTTGGAGACAACC 1340
||| | | |||||||||||||||| || || ||||||||||||||||||||||| |||||
Sbjct 1240 CCCTGCCCGCCTCCGCTCCATCGCAAAGAA-ACAGGTGGATTATCTACTTGGAGGCAACC 1298
Query 1341 CATT-AAGAATGTCTTACATGGTTGGTTACGGTCCGAAAT-TCCCACGGCGAATCCACCA 1398
| || |||| |||| |||||||||||||| |||| ||||| ||| ||| || || |||||
Sbjct 1299 CGTTGAAGA-TGTCATACATGGTTGGTTATGGTCTGAAATATCC-ACGTCGGATTCACCA 1356
Query 1399 CCGTGGCTCCTCTTTACCTTGTGTTGCAAG-CCACCCGGCCAAGATCCAATGCCACCAAG 1457
||||||||| ||| | || | |||||| | ||||||| ||| |||||| |||||| | |
Sbjct 1357 CCGTGGCTCATCTCTCCCCTCCGTTGCA-GTCCACCCGACCAGGATCCAGTGCCACGACG 1415
Query 1458 GCTT-TGCAATCATGAACTCTCAATCTCCAAACCCTAACTTCCTTGTTGGTGCAGTCGTT 1516
|||| | | | | | |||||||||||| || |||||| ||| || |||||||| ||
Sbjct 1416 GCTTCTCCT-TGTTTACCTCTCAATCTCCTAATCCTAACGACCTAGTCGGTGCAGTAGTC 1474
Query 1517 GGTGGTCCGGACCAGCATGATCGCTTCCCGGACGAACGGTCCGATTACG-AGCAGTCCGA 1575
||||||||||||||| | |||| ||||| |||||||||||||| |||| | | ||| ||
Sbjct 1475 GGTGGTCCGGACCAGAACGATCAATTCCCTGACGAACGGTCCGACTACGGA-CGGTCAGA 1533
Query 1576 GCCGGCTACTTACATCAATGCACCACTCGTTGGAGCTCTTGCCT-A-CTTCGCTC-ACGC 1632
||| || |||||||| || || ||||| ||||||||| ||| || | ||| |||| | |
Sbjct 1534 GCCAGCAACTTACATTAACGCTCCACTTGTTGGAGCT-TTGGCTTATCTT-GCTCGAT-C 1590
Query 1633 CTATGGTCAACT 1644
||| || |||||
Sbjct 1591 CTAAGGCCAACT 1602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94326824055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5