BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490342
Length=2898
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02280.1 | Symbols: SUS3, ATSUS3 | sucrose synthase 3 | chr4... 4196 0.0
> AT4G02280.1 | Symbols: SUS3, ATSUS3 | sucrose synthase 3 | chr4:994927-998967
FORWARD LENGTH=2917
Length=2917
Score = 4196 bits (2272), Expect = 0.0
Identities = 2732/2941 (93%), Gaps = 83/2941 (3%)
Strand=Plus/Plus
Query 1 ACATGTACTCTCCTCCAACACAAACACGTCACTTGTAGCaaaaaaaCAGTAACAAGAAAC 60
||||||||||||||| |||| |||||||||||||||||| ||||||||| |||||||
Sbjct 1 ACATGTACTCTCCTCTAACATAAACACGTCACTTGTAGC--GAAAACAGTATCAAGAAAA 58
Query 61 AGAGAAGATCAAACACGtcttcttcttcgtctctctctcttTGTCGCATAAAATTCCAGA 120
|||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||
Sbjct 59 AGAGAAGATCAAACACGTCTTCTT-TTC-TCTCTCTCTCTTTGTCGCCTAAAATTCCAGA 116
Query 121 TTCACTCTGCTTTTTATCC-TTTAATCAGTGATTTTTCCTTTTTATTA-CGATCACT-G- 176
||||||||||||||| || |||||||| |||||||||| ||||| || | ||| | |
Sbjct 117 ATCACTCTGCTTTTTACCCTTTTAATCAATGATTTTTCC-TTTTAGTAGCAATCGTTGGT 175
Query 177 AAAGCGaaaaaaaCAAAACTTTTCT----C-A--A--C-------CT--T--T--TCTGA 214
| || |||||| |||||||||| | | | | | | | |||||
Sbjct 176 GATTCG--AAAAACCAAACTTTTCTCGGACTAGGATTCTAGGGTTTTAGTGATCATCTGA 233
Query 215 ATATCCATGGCAAACCCTAAGCTCACTAGGATTATAAGCACAAGGGATCGCGTGCAGGAC 274
|||| ||||||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 234 ATATTCATGGCAAACCCTAAGCTCACTAGGGTTCTAAGCACAAGGGATCGCGTGCAAGAC 293
Query 275 ACGCTCTCTGCTCACCGCAACGAACTCGTCGCTCTTCTCTCCAGATATGTGGATCAGGGA 334
||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 294 ACGCTTTCCGCTCACCGCAACGAACTCGTTGCTCTTCTCTCCAGGTATGTGGATCAGGGG 353
Query 335 AAAGGGATTCTTCAGCCACATAACTTAATCGACGAACTCGAATCTGTAATCGGAGACGAT 394
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 354 AAAGGGATTCTTCAACCACATAACTTAATTGACGAACTCGAATCTGTTATCGGAGACGAT 413
Query 395 GCAACGAAA-CAGAGTCTCTCTGATGGTCCTTTTGGAGAAATCCTTAAATCAGCAATGGA 453
| ||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 414 GAAAC-AAAGAAGAGTCTCTCTGATGGTCCTTTTGGAGAGATCCTTAAATCAGCAATGGA 472
Query 454 AGCGATAGTTGTGCCACCATTTGTTGCCTTAGCCGTTAGACCAAGACCTGGTGTTTGGGA 513
||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 473 AGCTATAGTTGTACCACCTTTTGTTGCGTTAGCCGTTAGACCAAGACCTGGTGTTTGGGA 532
Query 514 ATATGTTCGTGTTAATGTCTTCGAGCTAAGTGTTGAACAGTTAACAGTCTCTGAGTATCT 573
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 533 ATATGTTCGTGTTAATGTCTTCGAGCTAAGTGTTGAACAATTAACAGTCTCTGAGTATCT 592
Query 574 TCGTTTCAAAGAAGAACTCGTTGATGGACCTAATAGTGACCCTTTTCCTCTTGAGCTTGA 633
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 593 TCGTTTCAAAGAAGAACTCGTTGATGGACCTAATAGTGACCCTTTTTGTCTTGAGCTTGA 652
Query 634 TTTCGAGCCCTTTAACGCAAACGTGCCACGTCCTTCTCGTTCGTCTTCCATTGGTAATGG 693
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 653 TTTCGAGCCCTTTAACGCAAACGTGCCACGTCCTTCTCGTTCGTCTTCGATTGGTAATGG 712
Query 694 AGTTCAGTTTCTGAATCGTCACTTGTCTTCTGTAATGTTCCGTAACAAAGATTGCTTGGA 753
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 713 AGTTCAGTTTCTGAATCGTCACTTGTCTTCTGTTATGTTCCGTAACAAAGATTGCTTGGA 772
Query 754 GCCTCTGCTTGATTTCCTTAGAGTTCATAAGTACAAAGGTCATCCGTTGATGTTGAATGA 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GCCTCTGCTTGATTTCCTTAGAGTTCATAAGTACAAAGGTCATCCGTTGATGTTGAATGA 832
Query 814 TCGGATTCAAAGCATATCTAGGCTTGAAAACCAACTTAATAAAGCAGAAGATCATATCTC 873
||||||||||||||||||||||||| ||| ||| |||| |||||||||||||||||||||
Sbjct 833 TCGGATTCAAAGCATATCTAGGCTTCAAATCCAGCTTAGTAAAGCAGAAGATCATATCTC 892
Query 874 TAAGCTTTCACAAGAAACTCCATTCTCGGAATTCGAATATGTGCTT-CAAGGAATGGGTT 932
||||||||||||||||||||| ||||||||||||||||| | | || |||||||||||||
Sbjct 893 TAAGCTTTCACAAGAAACTCCGTTCTCGGAATTCGAATACGCG-TTGCAAGGAATGGGTT 951
Query 933 TTGAGAAAGGATGGGGAGATACCGCAGGGCGAGTTCTTGAAATGATGCATCTTCTCTCTG 992
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 952 TTGAGAAAGGATGGGGAGATACCGCAGGGAGAGTTCTTGAAATGATGCATCTTCTCTCTG 1011
Query 993 ATATTCTTCAAGCTCCTGATCCTTCGACCTTGGAGAAGTTTCTCGGGATGGTACCGATGG 1052
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||
Sbjct 1012 ATATTCTTCAAGCTCCTGATCCTTCGTCCTTGGAGAAGTTTCTTGGGATGGTACCAATGG 1071
Query 1053 TTTTCAACGTTGTGATCTTATCTCCACATGGATATTTTGGGCAAGCCAATGTCTTAGGAT 1112
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1072 TTTTCAACGTTGTGATCTTATCTCCACATGGATATTTCGGGCAAGCCAATGTTTTAGGCT 1131
Query 1113 TACCTGACACTGGTGGACAAGTTGTCTATATTCTAGACCAAGTCCGTGCCCTTGAGACCG 1172
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1132 TACCTGACACTGGTGGACAAGTTGTCTATATTCTTGACCAAGTCCGTGCCCTTGAGACTG 1191
Query 1173 AAATGCTGTTGAGAATAAAGAGACAGGGGTTGGATATAACACCTAGGATTCTTATTGTAA 1232
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1192 AAATGCTGTTGAGAATAAAGAGACAGGGGTTGGATATATCACCTAGTATTCTTATTGTAA 1251
Query 1233 CTAGGTTGATACCGGATGCTAAAGGAACCACGTGTAACCAGCGGTTAGAGAGAGTCAGCG 1292
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1252 CTAGGTTGATACCGGATGCTAAAGGAACTACGTGTAACCAGCGGTTAGAGAGAGTCAGCG 1311
Query 1293 GAACAGAGCATACTCATATTCTCCGGGTTCCTTTTAGGTCCGATAAAGGGATCCTCCGTA 1352
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 1312 GAACAGAGCATACTCATATTCTCCGGGTTCCTTTTAGGTCTGAGAAAGGAATCCTCCGTA 1371
Query 1353 AGTGGATTTCAAGATTCGACGTATGGCCTTATCTGGAGAACTATGCTCAAGATGCAGCAA 1412
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1372 AGTGGATTTCAAGATTCGACGTATGGCCTTATCTAGAGAACTATGCTCAGGATGCAGCAA 1431
Query 1413 GCGAGATTGTAGGTGAATTACAAGGTGTACCCGATTTTATCATCGGTAACTATAGTGACG 1472
|||||||||| |||||||| ||||| ||||| || |||||||||||||||||||||||||
Sbjct 1432 GCGAGATTGTCGGTGAATTGCAAGGCGTACCGGACTTTATCATCGGTAACTATAGTGACG 1491
Query 1473 GAAACCTTGTTGCATCGTTAATGGCACATAGAATGGGTGTTACACAGTGTACTATTGCAC 1532
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1492 GAAACCTTGTTGCATCGTTAATGGCACATAGAATGGGTGTTACACAATGTACTATTGCAC 1551
Query 1533 ATGCTTTGGAGAAAACCAAGTATCCAGATTCAGACATTTACTGGAAAGATTTCGACAACA 1592
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1552 ATGCTTTGGAGAAAACCAAGTATCCAGATTCAGACATTTACTGGAAAGACTTCGACAACA 1611
Query 1593 AGTATCATTTCTCTTGTCAATTCACAGCTGATCTAATCGCAATGAACAACGCAGATTTCA 1652
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1612 AGTATCATTTCTCTTGTCAATTCACAGCTGATCTTATCGCAATGAACAACGCAGATTTCA 1671
Query 1653 TCATCACAAGCACTTACCAAGAAATCGCGGGAACGAAGAACACGGTCGGTCAATATGAAA 1712
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1672 TCATCACAAGCACTTACCAAGAAATCGCAGGAACGAAGAACACCGTCGGTCAATATGAAA 1731
Query 1713 GCCATGGGGCTTTTACGCTCCCGGGACTATACAGAGTAGTACACGGCATCGATGTGTTTG 1772
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1732 GCCACGGGGCTTTTACGCTCCCGGGACTATATAGAGTAGTACACGGCATCGATGTGTTTG 1791
Query 1773 ATCCGAAGTTCAACATAGTCTCGCCCGGCGTAGACATGGCCATATATTTCCCGTTTTCTG 1832
|||||||||||||||||||||||||||| | ||||||| ||||||||||||||| ||| |
Sbjct 1792 ATCCGAAGTTCAACATAGTCTCGCCCGGTGCAGACATGACCATATATTTCCCGTATTCCG 1851
Query 1833 AAGAAACTAAGAGACTTACAGCTTTACATAGTTCAATAGAGGAAATGCTCTATAGCCCTG 1892
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1852 AAGAAACTAGGAGACTTACAGCTTTACATGGTTCAATAGAGGAAATGCTCTATAGCCCTG 1911
Query 1893 AGCAGACTGATGAGCATGTCGGTACACTGAGCGATCGGTCAAAGCCAATACTCTTCTCTA 1952
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1912 ACCAGACTGATGAGCATGTCGGTACACTGAGTGATCGATCAAAGCCAATACTCTTCTCTA 1971
Query 1953 TGGCGAGGCTCGACAAAGTGAAGAACATCTCCGGTTTAGTTGAGATGTACAGCAAGAACA 2012
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1972 TGGCGAGGCTCGACAAAGTGAAGAACATCTCCGGTTTAGTTGAGATGTATAGTAAGAACA 2031
Query 2013 CAAAGTTGAGGGAGCTGGTTAATCTGGTTGTAATATCTGGTAACATTGATGTGAACAAGT 2072
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2032 CAAAGTTGAGGGAGCTGGTTAATCTGGTTGTAATAGCTGGTAACATTGATGTGAACAAGT 2091
Query 2073 CCAAAGACAGAGAAGAAATCGCAGAGATTGAGAAAATGCAGAACCTTGTGAAGAGTTACA 2132
||||||| ||||||||||||| |||||||||||||||||| |||||| |||||| |||||
Sbjct 2092 CCAAAGATAGAGAAGAAATCGTAGAGATTGAGAAAATGCATAACCTTATGAAGAATTACA 2151
Query 2133 AGCTTGATGGACAGTTTCGTTGGATAACGGCTCAGACAAACCGAGCTCGAAATGGTGAGC 2192
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 2152 AGCTTGATGGACAGTTTCGTTGGATAACTGCTCAGACTAACCGAGCTCGAAATGGTGAGC 2211
Query 2193 TTTACCGATACATCGCCGATACAAGAGGTGCTTTTGCTCAGCCTATTAGGCTATTAGCTA 2252
||||||| |||||||| ||||||||||||||||||||||||||| | | | |
Sbjct 2212 TTTACCGCTACATCGCGGATACAAGAGGTGCTTTTGCTCAGCCT----G-C-----G-T- 2259
Query 2253 TGAAAACCTGCATTCTACGAGGGTTTTGGGCTTACGGTATTGGAAGCGATGACTTGCGGG 2312
| | | | | |||| |||||| ||||||||| ||||||||||||||||||||
Sbjct 2260 T-----C-T--A--C---GAGGCTTTTGGACTTACGGTAGTGGAAGCGATGACTTGCGGG 2306
Query 2313 CTTCCGACTTTCGCCACTTGTCA-GGTGGTCCTGCAGAGATCATCGAGCACGGGCTCTCG 2371
|| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 2307 CTCCCGACTTTTGCCACTTGTCACGGTGGTCCAGCAGAGATCATCGAGCACGGGCTCTCG 2366
Query 2372 GGTTTCCACATCGATCCATACCATCCTGAGCAAGCGGGTAACATAATGGCTGATTTCTTT 2431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2367 GGTTTCCACATCGATCCATACCATCCTGAGCAAGCGGGTAACATAATGGCTGATTTCTTT 2426
Query 2432 GAACGTTGTAGGGAAGATCCAAACCATTGGAAGAAAGTATCAGACGCTGGTCTCCAAAGG 2491
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2427 GAACGTTGTAAGGAAGATCCAAACCATTGGAAGAAAGTATCAGACGCTGGTCTCCAAAGG 2486
Query 2492 ATATACGAAAGGTACACATGGAACATATACTCGGAGAGATTGATGACACTAGCTGGTGTG 2551
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2487 ATATACGAAAGGTACACATGGAAGATATACTCGGAGAGATTGATGACACTAGCTGGTGTG 2546
Query 2552 TATGGTTTCTGGAAATATGCATCAAAATTGGAGCGTCGTGAGACTCGGCGATATCTTGAA 2611
||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 2547 TATGGTTTCTGGAAATACGTATCGAAATTGGAGCGTCGTGAGACTCGGCGATATCTTGAA 2606
Query 2612 ATGTTCTACATTCTCAAATTCCGCGACTTGGTGAAAACTGTTCCT-CTAACCGCCGACGA 2670
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 2607 ATGTTCTACATTCTCAAATTCCGCGACTTGGTGAAAACTGTTCCTTC-AACCGCCGATGA 2665
Query 2671 CTGACCCGGTTGGGCGTAGGATGAAGTGTTGGGCTGTAAAAAAGAATAAAAGATGAGTAA 2730
||||||||||| |||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 2666 CTGACCCGGTTCAGCGTTGGATGAAGTGTTGGACTGTAAAAAAGAATAAATGATGAGTAA 2725
Query 2731 CCTTGGCTATGTAG--TATGTACCCTATGTTGTGTGTATGAACGGAAGA-TTTGTTCCAT 2787
| ||||||||||| ||||| | ||| || |||||||| |||||| ||||||||||
Sbjct 2726 CTTTGGCTATGTACCCTATGT----TGTGT-GTATGTATGAAAGGAAGAATTTGTTCCAT 2780
Query 2788 -------GGAGTTATTACGAACTTCGTGGTACTTTTGTGTTGTCTCATGTGTGT--GACT 2838
||||| |||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 2781 CTTCCATGGAGTAATTACGAATTTGGTGGTACTTTTGTGTTGTCTCATGTGTGTCTGACT 2840
Query 2839 GACATGTTGAAAAT-ATTCACGTGAAGTTTGTAGCTTATAATAAAAAGTCTTCAATGGAA 2897
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2841 GACATGTTGAAGATTATTCACGTGAAGTTTGTAGCTTATAATAAAAAGTCTTCAATGGAA 2900
Query 2898 C 2898
|
Sbjct 2901 C 2901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144029293353
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5