BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490343 Length=725 Score E Sequences producing significant alignments: (Bits) Value AT4G02270.1 | Symbols: RHS13 | root hair specific 13 | chr4:992... 977 0.0 > AT4G02270.1 | Symbols: RHS13 | root hair specific 13 | chr4:992175-993038 REVERSE LENGTH=748 Length=748 Score = 977 bits (529), Expect = 0.0 Identities = 680/749 (91%), Gaps = 25/749 (3%) Strand=Plus/Plus Query 1 CTTGCTTAAGCAACATATAAACAAGGCAAGCaaaaaaaaaaaaTGGCTTTCTCACGCCTC 60 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 CTTGCTTAAGCAACATATAAACAAAGCAAGCAAAAAAAAAAAATGGCTTTCTCACGCCTC 60 Query 61 TCATTTGCTGCTTCTCTTGTAGTCTTCTCATCTCTAATCATATCTTCAGTTGCTTATTAC 120 |||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCATTTGCAGCTTCTCTCATCGTCTTCTCATCTCTAATCATATCTTCAGTTGCTTATTAC 120 Query 121 GGCAATGAAGCCGACCCAGAGACCGGGAAATTGATTCCCATCGCCGTTGAAGGGGTCATC 180 ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| ||||| Sbjct 121 GGCAATGAAGCTGACCCGGAGACCGGAAAATTGATTCCCATCGCCGTTGAAGGGATCATC 180 Query 181 ATGTGCAAGTCCGGTGGCAAAACTTACCCAATTCAAGGTGCAACGGCAAGAATTGCATGT 240 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 181 AAGTGCAAGTCCGGTGGCAAAACTTACCCAATTCAAGGTGCAACGGCAAGAATTGCGTGT 240 Query 241 GTGAAGGTGGATGCTTATGGGAAAGAGATAGTTCCAATATCGATAATGAGCAGCAAAACT 300 |||||||| ||||| |||||||| ||| ||||||||||||||||| |||||||||||||| Sbjct 241 GTGAAGGTCGATGCATATGGGAATGAGTTAGTTCCAATATCGATATTGAGCAGCAAAACT 300 Query 301 GATGCTAAAGGTTACTTCTTCGCCACGATATTCCCTTCGCAGCTTCGTGCAGGAAGGACA 360 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GATGCTAAAGGTTACTTCATCGCCACGATATTCCCTTCGCAGCTTCGTGCAGGAAGGACA 360 Query 361 GTGACCAAATGCAAAGCTTACCTTTACAAATCTCCAATTGCTGATTGCGATTTCCCGACC 420 ||||||||||||||| |||||||||||||||||||| | |||||||||||||| |||||| Sbjct 361 GTGACCAAATGCAAAACTTACCTTTACAAATCTCCACTCGCTGATTGCGATTTTCCGACC 420 Query 421 GATGTGAACAAAGGTGTTAGAGGACAGACATTGAGCAAGTACCGTGTTCTTGAAGACAAG 480 ||||||||||||||||||||||||||| ||||||||| ||||||| ||||| |||||||| Sbjct 421 GATGTGAACAAAGGTGTTAGAGGACAGCCATTGAGCACGTACCGTATTCTTCAAGACAAG 480 Query 481 AGCTTCAAGCTTTACTGGGCTGGTCCTTTCTTCTACACCTCTGAACCTACTTACTACTAA 540 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 481 AGCTTCAAGCTTTACTGGGCTGGTCCTTTCTTCTACACGTCTGAACCTACTTACTACTAA 540 Query 541 TTCTGATCTTTTGATCAACGTGAAATTTAACATGTTCTTG-AGA-TGGAGAAT-C-TTT- 595 || ||||||| |||| ||| |||||||||||||||||||| ||| | | | | ||| Sbjct 541 TTATGATCTTCTGATGAACATGAAATTTAACATGTTCTTGGAGAATC-ATTTTTCGTTTG 599 Query 596 TC--ATT-T--GT--T-TGA--TT------AAAATGAGCTAAGAGTTTGTTTTCTTTGT- 638 | ||| | || | | | || ||||||| ||||||||||||||||||| | Sbjct 600 TTTGATTATTCGTCGTATAACGTTGTCTGCAAAATGATCTAAGAGTTTGTTTTCTTTATC 659 Query 639 TTCTATTTCATGTCGTATATATGACTTTGTCATGTATGTTATGTTTTAAtttttt-ttGG 697 || |||||||||| | ||||||||||||||||||||| |||||||||||| |||| |||| Sbjct 660 TTATATTTCATGTTGCATATATGACTTTGTCATGTATCTTATGTTTTAATATTTTCTTGG 719 Query 698 TAAATGTATGT-TTTATTGGATTTGTTCT 725 |||||||||| ||||||||||||||||| Sbjct 720 TAAATGTATGGGTTTATTGGATTTGTTCT 748 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35163902900 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5