BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490348
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02230.1 | Symbols: | Ribosomal protein L19e family protein... 1288 0.0
AT1G02780.1 | Symbols: emb2386 | Ribosomal protein L19e family ... 621 3e-177
AT3G16780.1 | Symbols: | Ribosomal protein L19e family protein... 422 3e-117
> AT4G02230.1 | Symbols: | Ribosomal protein L19e family protein
| chr4:979170-980670 REVERSE LENGTH=878
Length=878
Score = 1288 bits (697), Expect = 0.0
Identities = 767/801 (96%), Gaps = 4/801 (0%)
Strand=Plus/Plus
Query 1 CTTCTCCGCGAAAATCAGGGAGAGGCTAAAATGGTTTCGTTGAAGCTCCAGAAGCGTCTC 60
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCTTCGCCAAAATCAGGGAGAGGCTAAAATGGTTTCGTTGAAGCTCCAGAAGCGTCTC 60
Query 61 GCATCCTCAGTACTCAAGTGCGGGAAGAGAAAAGTATGGCTCGATCCGAACGAAGGAAGT 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GCATCCTCAGTACTCAAGTGCGGGAAGAGAAAAGTATGGCTCGACCCGAACGAAGGAAGT 120
Query 121 GATATTTCCATGGCCAATTCGCGCCAAAACATCAGGAAACTTGTGAAGGATGGTTTCATC 180
||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 121 GATATCTCCATGGCCAATTCGCGTCAAAACATCAGGAAGCTTGTGAAGGATGGATTCATC 180
Query 181 ATCAGGAAGCCAACAAAGATACACTCACGATCCAGGGCACGTCAATTGAATATAGCCAAG 240
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCAGGAAGCCAACGAAGATCCACTCACGATCCAGGGCACGTCAATTGAATATAGCCAAG 240
Query 241 AGAAAGGGACGTCACTCTGGTTATGGTAAGAGGAAGGGTACCCGAGAGGCAAGGCTGCCG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 AGAAAGGGACGTCACTCTGGTTATGGTAAGAGGAAGGGTACCCGAGAGGCAAGGTTGCCA 300
Query 301 ACAAAGGTATTGTGGATGAGGAGGATGAGAGTGCTGAGGCGTCTTTTGAAGAAGTATAGG 360
||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 ACAAAAGTTTTGTGGATGAGGAGGATGAGAGTGCTGAGGCGTCTGTTGAAGAAGTATAGG 360
Query 361 GAGACGAAGAAGATTGACAGACACATGTACCATGACATGTACATGAAAGTCAAGGGAAAC 420
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGACCAAGAAGATTGACAGACATATGTACCATGACATGTACATGAAAGTCAAGGGAAAC 420
Query 421 GTCTTCAAGAACAAGCGTGTCTTGATGGAAAGTATTCACAAGTCAAAGGCTGAGAAGGCT 480
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 421 GTCTTCAAGAACAAGCGTGTGTTGATGGAAAGTATTCACAAATCCAAGGCTGAGAAGGCT 480
Query 481 AGAGAGAAGACTTTGTCTGACCAGTTTGAGGCTAAGAGGGCTAAGAACAAGGCTAGCCGA 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGAGAGAAGACATTGTCTGACCAGTTTGAGGCTAAGAGGGCTAAGAACAAGGCTAGCCGA 540
Query 541 GAAAGGAAACACGCTCGACGAGAGGAGCGTCTTGCTAAGGGTCCTGGAGGAGACATACCT 600
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 GAGAGGAAACATGCTCGACGAGAGGAGCGTCTTGCCAAGGGTCCTGGAGGAGACATACCT 600
Query 601 GCCCCTGCACCACCTGCCCAAACCGCTGAGGTACCTGCGAAAAAGTCTAAGAAGTGAGAA 660
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCCGCTGCACCACCTGCACAAACCGCTGAGGTACCTGCGAAAAAGTCTAAGAAGTGAGAA 660
Query 661 GCTTGCTCGGTAGTGAATTCTCTTATAAGCAGTGATTTTGAATGGTTTTTGTGAT-TCAG 719
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct 661 GCTTGCTCGGTAGTGAATTCTCTTATAAGCAGTGATTTTGAATGGTTTATGTGATAT-AG 719
Query 720 CTTTGTGAAAACTCTTTCTTTG-CGACAAATATGAGAACCTTTGTCAGTAGTTTGTACTG 778
||||||||||||||||| |||| | |||||||||||||||||||||||||||| ||||||
Sbjct 720 CTTTGTGAAAACTCTTTATTTGTC-ACAAATATGAGAACCTTTGTCAGTAGTTCGTACTG 778
Query 779 TTTCGGGAGCCTTAATTCTAT 799
|||| |||| |||||||||||
Sbjct 779 TTTCAGGAGACTTAATTCTAT 799
> AT1G02780.1 | Symbols: emb2386 | Ribosomal protein L19e family
protein | chr1:607808-609465 REVERSE LENGTH=1031
Length=1031
Score = 621 bits (336), Expect = 3e-177
Identities = 503/583 (86%), Gaps = 14/583 (2%)
Strand=Plus/Plus
Query 18 GGGAGAGGCTAAAATGGTTTCGT-TGAAGCTCCAGAAGCGTCTCGCATCCTCAGT-ACTC 75
|||||| || ||||||||||| | |||||||||||||||| ||||| | ||||| | |
Sbjct 62 GGGAGAAGCAAAAATGGTTTC-TCTGAAGCTCCAGAAGCGGCTCGCCGCATCAGTGA-TG 119
Query 76 AAGTGCGGGAAGAGAAAAGTATGGCTCGATCCGAACGAAGGAAGTGATATTTCCATGGCC 135
|||||||||||| | ||||| ||||||||||| |||||| | || || |||||||||
Sbjct 120 AAGTGCGGGAAGGGCAAAGTTTGGCTCGATCCCAACGAAAGCTCCGACATCTCCATGGCC 179
Query 136 AATTCGCGCCAAAACATCAGGAAACTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACA 195
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 AATTCCCGCCAAAACATCAGGAAGCTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACC 239
Query 196 AAGATACACTCACGATCCAGGGCACGTCAAT-TGAATATAGCCAAGA-GAAAGGGACGTC 253
||||| ||||| || ||||| || || ||| |||| || ||||||| ||| ||| ||||
Sbjct 240 AAGATTCACTCTCGTTCCAGAGCTCG-CAAAATGAAGATTGCCAAGATGAA-GGGTCGTC 297
Query 254 ACTCTGGTTATGGTAAGAGGAAGGGTACCCGAGAGGCAAGGCTGCCGACAAAGGTATTGT 313
||||||| || |||||||||||||||||||| || || ||| |||| ||||||||| |||
Sbjct 298 ACTCTGGATACGGTAAGAGGAAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTGT 357
Query 314 GGATGAGGAGGATGAGAGTGCTGAGGCGTCTTTTGAAGAAGTATAGGGAGACGAAGAAGA 373
||||| | |||||| | || || |||||||| |||||||| || || |||||||||||||
Sbjct 358 GGATGCGTAGGATGCGTGTTCTTAGGCGTCTGTTGAAGAAATACAGAGAGACGAAGAAGA 417
Query 374 TTGACA-GACACATGTACCATGACATGTACATGAAAGTCAAGGGAAACGTCTTCAAGAAC 432
|||||| | |||||||||||||||||||||||| || ||||| || || |||||||||
Sbjct 418 TTGACAAG-CACATGTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAAC 476
Query 433 AAGCGTGTCTTGATGGAAAGTATTCACAAGTCAAAGGCTGAGAAGGCTAGAGAGAAGACT 492
||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 477 AAGCGTGTCTTGATGGAGAGTATCCACAAGTCAAAGGCTGAGAAGGCTAGGGAGAAGACT 536
Query 493 TTGTCTGACCAGTTTGAGGCTAAGAGGGCTAAGAACAAGGCTAGCCGAGAAAGGAAACAC 552
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 537 CTGTCTGATCAGTTTGAGGCTAAGAGGGCGAAGAACAAGGCTAGCCGAGAAAGGAAGCAT 596
Query 553 GCTCG-ACGAGAGGAGCGTCTT-GCTAAGGGTCCTGGAGGAGA 593
||| | | ||||||||||| || ||||||||||| || |||||
Sbjct 597 GCTAGGA-GAGAGGAGCGT-TTAGCTAAGGGTCCCGGTGGAGA 637
> AT3G16780.1 | Symbols: | Ribosomal protein L19e family protein
| chr3:5708925-5710579 FORWARD LENGTH=1017
Length=1017
Score = 422 bits (228), Expect = 3e-117
Identities = 466/577 (81%), Gaps = 32/577 (6%)
Strand=Plus/Plus
Query 30 AATGGTTTCGTTGAAGCTCCAGAAGCGTCTCGCATCCTCAGTACTCAAGTGCGGG-AAGA 88
|||||| ||| ||||| |||||||||| ||||| | || ||| | || |||||| |||
Sbjct 57 AATGGTGTCGCTGAAGATCCAGAAGCGGCTCGCCGCATCCGTAATGAAATGCGGGAAAG- 115
Query 89 GAAAAGTATGGCTCGATCCGAACGAA--GGAAGTGATATTTCCATGGCCAATTCGC-GCC 145
||||||| |||||||| || || ||| || | ||||| || ||||||||||| | | |
Sbjct 116 GAAAAGTTTGGCTCGACCCCAATGAATCGG--GCGATATCTCTATGGCCAATTC-CAGGC 172
Query 146 AAAACATCAGGAAACTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACAAAGATACACT 205
| ||||| ||||| |||||||||||||||||||| ||||||||||| || ||||| ||||
Sbjct 173 AGAACATTAGGAAGCTTGTGAAGGATGGTTTCATTATCAGGAAGCCTACTAAGATCCACT 232
Query 206 CACGATC-CAGGGC-ACGTCAATTGAATATA-GCCAAGAGAAAGGGACGTCACTCTGGTT 262
|||| || | |||| | | | ||||| | |||||| ||||||| ||||||||||| |
Sbjct 233 CACGTTCTC-GGGCTAGGGC-TTTGAA-CGAGGCCAAGCGAAAGGGTCGTCACTCTGGAT 289
Query 263 ATGGTAAGAGGAAGGGTACCCGAGAGGCAAGGCTGCCGACAAAG-GTATTGTGGATGAGG 321
| |||||||| |||||||| ||||||||||||| || || ||| | || |||||||||
Sbjct 290 ACGGTAAGAGAAAGGGTACAAGAGAGGCAAGGCTACCAACCAAGATTCTT-TGGATGAGG 348
Query 322 AGGATGAGAGTGCTGAGGCGTCTT-TTGAAG-AAGTATAGGGAGACGAAGAAGATTGACA 379
|| ||||| ||| |||||||| || ||| || ||||| | ||| | ||||||||||| |
Sbjct 349 AGAATGAGGGTGTTGAGGCGT-TTCTTG-AGCAAGTACCGTGAGTCAAAGAAGATTGATA 406
Query 380 GACACATGTACCATGACATGTACATGAAAGTCAAGGGAAACGTCTTCAAGAACAAGCGTG 439
| ||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||
Sbjct 407 GGCACATGTACCATGACATGTACATGAAAGTGAAGGGTAATGTTTTCAAGAACAAGCGTG 466
Query 440 T-CTTGATGGAAAGTATTCACAAG-TCAAAGGCTGAGAAGGCTAGAGAGAAGACTTT-GT 496
| ||| ||||| || || |||||| | || ||||||||||||||||||||||||| | |
Sbjct 467 TGCTT-ATGGAGAGCATCCACAAGATGAA-GGCTGAGAAGGCTAGAGAGAAGACTCTCG- 523
Query 497 CTGACCAGTTTGAGGCTAAGAGGGCTAAGAACAAGGCTAGCCGAGAAAGGAAACAC-GCT 555
|||||||||||||||| ||| | |||||||||||||||| | || || ||| ||
Sbjct 524 CTGACCAGTTTGAGGCCAAGCGTATTAAGAACAAGGCTAGCAGGGAGAG-AAAGTTTGC- 581
Query 556 C-GACGAGAGGAGCGTCTT-GCTAAGGGTCCTGGAGG 590
| || |||||||| | || ||| |||| ||||||||
Sbjct 582 CAGAAGAGAGGAGAGA-TTAGCTCAGGGACCTGGAGG 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38881229778
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5