BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490351
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02200.3 | Symbols: | Drought-responsive family protein | c... 1308 0.0
AT4G02210.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 861 0.0
AT1G02750.1 | Symbols: | Drought-responsive family protein | c... 189 5e-47
> AT4G02200.3 | Symbols: | Drought-responsive family protein |
chr4:972707-974692 FORWARD LENGTH=1245
Length=1245
Score = 1308 bits (708), Expect = 0.0
Identities = 857/926 (93%), Gaps = 22/926 (2%)
Strand=Plus/Plus
Query 285 ATATGTCCGGTTTGTAGCAGACGGGTGAAGATGCATATGGTTGATCACATTACCACGCAG 344
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 328 ATATGTCCGGTTTGTAGCAGACGAGTGAAGATGCATATGGTTGATCACATTACCACTCAG 387
Query 345 CATAGAGATGTCTTCAAGGGACTTTACAAGGATGAGTCATATTCAGCATTTTCTCCAAGG 404
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 388 CATAGAGATGTCTTCAAGAGACTTTACAAGGATGAGTCATATTCAGCATTTTCTCCAGGG 447
Query 405 ACTAAGAAATACTTACAGTCTCTAATCGATGAGCCACTGTCTACTAATCGTATATCTAAA 464
|||| |||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct 448 ACTAGGAAATACTTACAGTCTCTAATCGATGAGCCGTTGTCTACTAATCATACATCTAAA 507
Query 465 AGTGTTCCAGACCCATTATTATCATTTATCTACAATCCGCCGTCACCAAACCAGTCCAAG 524
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 508 AGTGTTCTGGACCCATTATTATCATTTATATACAATCCGCCGTCACCAAAGAAGTCCAAG 567
Query 525 CTTGTACTGCCTGATTCATCAAGTGAAGCAAGCATGGAACTCAAGAGCTCT-ATAAGGGA 583
||||||| ||||||||||| |||||||||||||||||| ||| |||| | ||||||||
Sbjct 568 CTTGTACAACCTGATTCATCTAGTGAAGCAAGCATGGAAGACAATAGCT-TAATAAGGGA 626
Query 584 TTCAACaaaaaaaGACTGGAAATCGCTGTCTCCCTTGTCAGATATGGAGCTACTAGAGAA 643
||||||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct 627 TTCAACAGAAAAAGACTGGGAATCGCCGTCTCCCTTGTCAGATACAGAGCTACTAGAGAA 686
Query 644 GGCAAAGAAGAGAGAGTTTGTACAAGGTTTAATATCATCAGCCATATTTGATCACATTTC 703
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 GGCAAAGAAGAGAGAGTTTGTACAAGGTTTAATATCATCAGCCATATTTGATCACATTTA 746
Query 704 CAACTTCTGAAAGAGAATAAGTATTTGTATATGAAACTCTGGCAAAGTACACTAGAGTAG 763
|||||||| || ||| |||||| ||||||||||||||||| |||||||| || | ||
Sbjct 747 CAACTTCT-AA-GAGCATAAGTCTTTGTATATGAAACTCTCGCAAAGTAGTCT-G--TAC 801
Query 764 TC-GATAATATAAGCCAATGAGCTTCTGTTTATCTTCAAACTTCTACTTTGCT-CAT-A- 819
|| | || |||||||||||||||||||||||||| |||||||||||||||||| | | |
Sbjct 802 TCTG-TAGTATAAGCCAATGAGCTTCTGTTTATCGTCAAACTTCTACTTTGCTTCTTTAC 860
Query 820 ATC-CTTAAT--T----T-ACTTGAGGTCGGAGTTTCCTAAACAACCACTTCTTGCGTAG 871
| | | |||| | | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 861 AGCTCATAATCCTCAAGTCACTTGAGGTCGGAGTTTCCTTAACAACCACTTCTTGCGTAG 920
Query 872 TTTCACATCTAGAGCCAAGAAAGTTTTCGCTTTGAGTTCATCTTCAAGCAGATCACAAGC 931
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 921 TTTCACATCTAGAGCCAAGAAAGTTTTCGCCTTGAGTTTATCTTCAAGCAGATCACAAGC 980
Query 932 ATCTAATATAAGTTCATCGTCCATGTCTGGTAACGCTTGAATAGCCTCAACCGTTTCCTC 991
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 981 ATCCAATATAAGTTCATCGTCCATGTCTGGTAACGCTTGAATAGCCTCAACCGTGTCCTC 1040
Query 992 TATTGCCATGGTTTGGGTTTCATCAACTCGAGGCTTCTTT-GGGTTTACAGGGCTTGTAT 1050
||||| |||||||||||||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 1041 TATTGACATGGTTTGGGTTTCATCAACTCGAGGCTT-TTTCGGGTTTATAGGGCTTGTAT 1099
Query 1051 CAGTATTAGCAAGTTGATCTCTTTTGTTCTTGGGGTCAAACAAAAGAGAGTTGCTATCTT 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 CAGTATTAGCAAGTTGATCTCTTTTGTTCTTGGGGTCAAACAAAAGAGAGTTGCTATCTT 1159
Query 1111 CTTCCTCAGCTGATATAGACAAATCTGTAGTCCCACTGGACTTGAATTCTTGGAATTCAG 1170
||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1160 CTTCCTCAGCTGAAATAGACAAATCTGTAGTACCACTGGACTTAAATTCTTGGAATTCAG 1219
Query 1171 TTTCAGGGTCAAACCAATCCATAGCT 1196
||||||||||||||||||||||||||
Sbjct 1220 TTTCAGGGTCAAACCAATCCATAGCT 1245
Score = 353 bits (191), Expect = 2e-96
Identities = 226/241 (94%), Gaps = 10/241 (4%)
Strand=Plus/Plus
Query 45 TGGATTCAGAATC-TAATGGAAGAAGATTTGTTGGGCATTTGTGGGTTTGATTCTTCGAA 103
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 54 TGGATTCAGAATCAAAATGGAAGAAGATTTGTTGGGCATTTGTGGGTTTGATTCGTCGAA 113
Query 104 GAAATATCGATTAGAAGAACTTGCCAAGTATCAGTCTGGTTCATGTATTGAGTTTGAAGA 163
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 114 GAAATATCGATTAGAAGAACTTGCCAAGTATCAGTCGGGTTCATGTATTGAGTTTGAAGA 173
Query 164 TGTGGAAGGAGATGATGAAATGGCAGTGGATTATCCATGCCCGTTTTGTTCAGATGATTA 223
|| | |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 174 TG---A------TGATGAAATGGCAGTGGATTATCCATGCCCGTTTTGCTCAGATGATTA 224
Query 224 TGATTTAGTTGAATTGTGTCACCATATCGATGAGGAGCATCAACTAGACGCTAACAATGG 283
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 225 TGATTTAGTTGAATTGTGTCACCATATCGATGAGGAGCATCAACTAGACGCCAACAATGG 284
Query 284 G 284
|
Sbjct 285 G 285
> AT4G02210.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G24960.2);
Has 791 Blast hits to 465 proteins in 19 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses
- 0; Other Eukaryotes - 26 (source: NCBI BLink). | chr4:973924-976129
REVERSE LENGTH=1782
Length=1782
Score = 861 bits (466), Expect = 0.0
Identities = 568/614 (93%), Gaps = 20/614 (3%)
Strand=Plus/Minus
Query 596 AGACTGGAAATCGCTGTCTCCCTTGTCAGATATGGAGCTACTAGAGAAGGCAAAGAAGAG 655
||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1620 AGACTGGGAATCGCCGTCTCCCTTGTCAGATACAGAGCTACTAGAGAAGGCAAAGAAGAG 1561
Query 656 AGAGTTTGTACAAGGTTTAATATCATCAGCCATATTTGATCACATTTCCAACTTCTGAAA 715
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1560 AGAGTTTGTACAAGGTTTAATATCATCAGCCATATTTGATCACATTTACAACTTCT--AA 1503
Query 716 GAGAATAAGTATTTGTATATGAAACTCTGGCAAAGTACACTAGAGTAGTC-GATAATATA 774
||| |||||| ||||||||||||||||| |||||||| || ||| || | || ||||
Sbjct 1502 GAGCATAAGTCTTTGTATATGAAACTCTCGCAAAGTAGTCT---GTACTCTG-TAGTATA 1447
Query 775 AGCCAATGAGCTTCTGTTTATCTTCAAACTTCTA--------CTTT---GCTCATAATCC 823
|||||||||||||||||||||| ||||||||||| |||| |||||||||||
Sbjct 1446 AGCCAATGAGCTTCTGTTTATCGTCAAACTTCTACTTTGCTTCTTTACAGCTCATAATCC 1387
Query 824 TTAATTTACTTGAGGTCGGAGTTTCCTAAACAACCACTTCTTGCGTAGTTTCACATCTAG 883
| || | |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1386 TCAAGTCACTTGAGGTCGGAGTTTCCTTAACAACCACTTCTTGCGTAGTTTCACATCTAG 1327
Query 884 AGCCAAGAAAGTTTTCGCTTTGAGTTCATCTTCAAGCAGATCACAAGCATCTAATATAAG 943
|||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1326 AGCCAAGAAAGTTTTCGCCTTGAGTTTATCTTCAAGCAGATCACAAGCATCCAATATAAG 1267
Query 944 TTCATCGTCCATGTCTGGTAACGCTTGAATAGCCTCAACCGTTTCCTCTATTGCCATGGT 1003
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1266 TTCATCGTCCATGTCTGGTAACGCTTGAATAGCCTCAACCGTGTCCTCTATTGACATGGT 1207
Query 1004 TTGGGTTTCATCAACTCGAGGCTTCTTT-GGGTTTACAGGGCTTGTATCAGTATTAGCAA 1062
|||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||
Sbjct 1206 TTGGGTTTCATCAACTCGAGGCTT-TTTCGGGTTTATAGGGCTTGTATCAGTATTAGCAA 1148
Query 1063 GTTGATCTCTTTTGTTCTTGGGGTCAAACAAAAGAGAGTTGCTATCTTCTTCCTCAGCTG 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GTTGATCTCTTTTGTTCTTGGGGTCAAACAAAAGAGAGTTGCTATCTTCTTCCTCAGCTG 1088
Query 1123 ATATAGACAAATCTGTAGTCCCACTGGACTTGAATTCTTGGAATTCAGTTTCAGGGTCAA 1182
| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1087 AAATAGACAAATCTGTAGTACCACTGGACTTAAATTCTTGGAATTCAGTTTCAGGGTCAA 1028
Query 1183 ACCAATCCATAGCT 1196
||||||||||||||
Sbjct 1027 ACCAATCCATAGCT 1014
> AT1G02750.1 | Symbols: | Drought-responsive family protein |
chr1:602497-604292 FORWARD LENGTH=1000
Length=1000
Score = 189 bits (102), Expect = 5e-47
Identities = 155/180 (86%), Gaps = 6/180 (3%)
Strand=Plus/Plus
Query 186 GCAGTGGATTATCCATGCCCGTTTTGTTC-AGATGATTATGATTTAGTTGAATTGTGTCA 244
|||||||| ||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 306 GCAGTGGAGTATCCATGCCCGTTTTGCGCAAG-TGATTATGATTTAGTTGAATTGTGTCA 364
Query 245 CCATATCGATGAGGAGCATCAAC-TAGACGCTAACAATGGGATATGTCCGGTTTGTAGCA 303
||||||||| || || |||| | | || |||||||||||||||||||| || |||||||
Sbjct 365 CCATATCGACGAAGAACATCGTCAT-GAAGCTAACAATGGGATATGTCCTGTATGTAGCA 423
Query 304 GACGGGTGAAGATGCATATGGTTGATCACATTACCA-CGCAGCATAGAGATGTCTTCAAG 362
| ||||||||||||||||||| ||||| || || | | || |||||||||||||| |||
Sbjct 424 AAAGGGTGAAGATGCATATGGTGGATCATATAAC-ATCACATCATAGAGATGTCTTGAAG 482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58734637650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5