BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490353
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02195.1 | Symbols: SYP42, TLG2B, ATSYP42, ATTLG2B | syntaxi... 1727 0.0
> AT4G02195.1 | Symbols: SYP42, TLG2B, ATSYP42, ATTLG2B | syntaxin
of plants 42 | chr4:970007-972307 REVERSE LENGTH=1179
Length=1179
Score = 1727 bits (935), Expect = 0.0
Identities = 1079/1147 (94%), Gaps = 16/1147 (1%)
Strand=Plus/Plus
Query 1 TTTGCGATTCAGATTCGTTTGCTTTTTCCGACGACAAAAGCTCCGAATCCGATCT-TGTT 59
|||||||||||||||||||||||||| ||||||||||||||||||| | | | | | ||
Sbjct 3 TTTGCGATTCAGATTCGTTTGCTTTTGCCGACGACAAAAGCTCCGATTTTG-TTTATTTT 61
Query 60 -T-------ATTTT--TTCCGGGA-AATGTAGAGAATCAATTGATTTGGCATTGATGGCG 108
| ||||| || || || ||| |||||||||||||||||| ||||||||||
Sbjct 62 CTCCGGGAAATTTTACTTTCGAGATTCTGTTGAGAATCAATTGATTTGGTATTGATGGCG 121
Query 109 ACGAGGAATCGAACGACGGTGTACCGGAAACACAGGGATGCGTGCAAGAGCGCGCGTGCT 168
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 122 ACGAGGAATCGAACGACGGTGTACCGGAAACACAGGGATGCGTGTAAGAGCGCGCGTGCT 181
Query 169 CCTTTATCTTTATCGGCGTCTGATTCGTTCGGTGGTCCGGTGATCGAAATGGTTAGCGGT 228
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CCATTATCTTTATCGGCGTCTGATTCGTTCGGTGGTCCGGTGATCGAAATGGTTAGCGGT 241
Query 229 TCGTTTTCTCGGTCAAATCACTCCTCTTATGCTCCTTTGAATTCCAATGATCCTGGTCCA 288
|| ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 242 TCATTTTCCCGGTCCAATCACTCCTCTTATGCTCCTTTGAATTCCTATGATCCTGGTCCA 301
Query 289 TCAAGTAGCGATGCATTCACAATTGGTATGCCACCAGCTTGGGTTGATGATTCTGAGGAG 348
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TCAAGTAGTGATGCCTTCACAATTGGTATGCCACCAGCTTGGGTTGATGATTCTGAGGAG 361
Query 349 ATAACATATAGTATACAAAAGGTGCGAGACAAAATGAGTGAACTAGCTAAGGCACATTCG 408
||||| | || |||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 362 ATAACTTTTAATATACAAAAGGTGCGAGACAAAATGAATGAACTAGCAAAGGCACATTCA 421
Query 409 AAGGCACTCATGCCTACATTTGGAGATAACAAAGGGATTCATCGTGAAGTCGAGATGCTC 468
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 AAGGCTCTTATGCCTACATTTGGAGATAACAAAGGGATTCATCGTGAAGTCGAGATGCTC 481
Query 469 ACTCATGAAATTACAGATTTGTTGAGGAAGTCAGAAAAGAGATTGCAGAAATTATCTACT 528
|||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 482 ACTCATGAGATCACAGATTTGTTGAGGAAGTCAGAAAAGAGATTGCAGATGTTATCTACT 541
Query 529 AGAGGGCCTTCTGAAGAATCCAATCTCAGAAAAAATGTGCAGCGTTCTCTTGCAACAGAT 588
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 542 AGAGGGCCTTCTGAAGAATCAAATCTCAGGAAAAATGTGCAGCGTTCTCTTGCAACAGAT 601
Query 589 CTTCAGAACCTTTCCATGGAGCTCCGCAGAAAACAGTCTACTTATTTAAAACGTCTGCAG 648
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 602 CTTCAGAACCTTTCCATGGAGCTCCGCAGAAAACAGTCTACTTACTTAAAACGTCTGCAG 661
Query 649 CAGCAGAAAGAGGGTCAGGATGAAGTAGATTTAGAGTTTAACGTGAATGGAAAGATGTCG 708
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 662 CAGCAGAAAGAGGGTCAGGATGAAGTAGATTTAGAGTTTAATGTGAATGGAAAGATGTCG 721
Query 709 AGACTGGATGAAGAGGATGAACTTGGTGGGATGGGTTTCGATGAACACCAGACAATCAAG 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 AGACTGGATGAAGAGGATGAACTTGGTGGGATGGGTTTCGATGAACACCAGACAATCAAG 781
Query 769 TTGAAGGAAGGGCAACATGTCTCAGCGGAAAGGGAACGAGAGATACAACAGGTTCTGGGT 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TTGAAGGAAGGGCAACATGTCTCAGCGGAAAGGGAACGAGAGATACAACAGGTTCTGGGT 841
Query 829 TCCGTGAACGACCTTGCACAGATAATGAAAGACTTATCAGCCCTTGTGATTGACCAGGGC 888
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TCCGTGAATGACCTTGCACAGATAATGAAAGACTTATCAGCCCTTGTGATTGACCAGGGC 901
Query 889 ACGATTGTTGATCGTATAGACTACAATATCCAAAATGTTTCTACGTCGGTTGAGGAAGGC 948
|||||||||||||| |||||||||||| ||||||| |||||||| ||||| |||||||||
Sbjct 902 ACGATTGTTGATCGGATAGACTACAATGTCCAAAACGTTTCTACATCGGTCGAGGAAGGC 961
Query 949 TATAAACAACTACAAAAGGCGGAGAGAACACAAAGAGAAGGAGCAATGGTGAAATGTGCG 1008
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 TATAAACAACTACAAAAGGCGGAGAGAACACAAAGAGAAGGAGCAATGGTGAAATGTGCA 1021
Query 1009 ACGATACTCCTTGTACTCTGTTTCATAATGATTGTTCTTTTAATCCTTAAGAATATTTTG 1068
|| |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 1022 ACTATACTCCTTGTACTCTGTTTGATCATGATTGTTCTTTTAATTCTTAAGAATATTTTG 1081
Query 1069 TTTTAGTCATATACCAACAATTTTAAAA-GAAAAACAGCTTTTCTTTTGTTGTAACAAAC 1127
|||||||||||| |||||||||| | || |||||||||||| |||| | |||||||||||
Sbjct 1082 TTTTAGTCATATGCCAACAATTT-AGAATGAAAAACAGCTTGTCTTGT-TTGTAACAAAC 1139
Query 1128 CGTAACC 1134
||||||
Sbjct 1140 AGTAACC 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5