BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490355
Length=535
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02170.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 800 0.0
AT5G38700.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 159 2e-38
> AT4G02170.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G38700.1);
Has 53 Blast hits to 53 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:958049-958641
FORWARD LENGTH=593
Length=593
Score = 800 bits (433), Expect = 0.0
Identities = 490/518 (95%), Gaps = 2/518 (0%)
Strand=Plus/Plus
Query 19 AATGGCGGATTCGTCTCAGAAGAAAATCAGAAGAAACGCAATAACACATAAAGCTTGGAG 78
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 77 AATGGCGGATTCGTCTCAGAAGAAAATCAGAAGAAACGCGATAACACATAAAGCATGGAG 136
Query 79 TCTCGTGAGGATGGCTCTTCTATGGGGAAGAAAAGGTGGAGTTTTCAAAAGATGGCCATT 138
|||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 137 TCTCATGAAGATGGCTCTTCTATGGGGAAGAAAAGGTGGAGTTTTCAAAAAATGGCCATT 196
Query 139 GTTCGAACTACGTAGCTTGTTCTCCAAGCATCTCAAAGCCCTAGCTCGTCATCATAGCAA 198
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||
Sbjct 197 GTTCGAACTACGTAGCTTGTTCTTCAAGCATCTCAAAGCCCTAGCTCATCATCATAGTAA 256
Query 199 CGGTGACCGTTATTACGGAGAACGCCAGCTTTCCTTTGATGAAACGCCGTTATTTAATGT 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 257 CGGTGACCGTTATTACGGAGAACGCCAGCTTTCCTTTGATGAAACGCCGTTATTTAACGT 316
Query 259 CAAGAAGAAGATGCATCGTCCTACTACGTCTATGAGGTTCCTCCTCCTTCCCTGCATTGC 318
|||||||||||||||| |||||||| |||||||||||||||||||||| |||||| ||||
Sbjct 317 CAAGAAGAAGATGCATTGTCCTACTTCGTCTATGAGGTTCCTCCTCCTCCCCTGCTTTGC 376
Query 319 TCCTCCATTAGATCTTGACTATGACTTTGAAATGGATGGTCAAGATTATTCCGATGAGGT 378
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 377 TCCTCCCGTAGATTTTGACTATGACTTTGAAATGGACGGTCAAGATTATTCCGACGAGGT 436
Query 379 TACT-TCGTACGGTTACGATGAATCTTACTCGGAAGAAGAGAAAGGGGTGGATGTGAGAG 437
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 437 -ACAATCGTACGGTTACGATGAATCTTGTTCGGAAGAAGAGAAAGGGGTGGATGTGAGAG 495
Query 438 CTGAGGAGTTCATTGCTAAGTTCTATGAGCAGATCAAGTTGCAGAGACAAGTCTCTTATT 497
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 496 CAGAGGAGTTCATTGCTAAGTTCTATGAGCAGATCAAGTTGCAGAGACAAGTGTCTTATT 555
Query 498 TGGAATACAAACAACACAACGACGCCGTATCGTTATAG 535
|| ||||||||||||||||||||||||||| ||||||
Sbjct 556 TGAAATACAAACAACACAACGACGCCGTATTATTATAG 593
> AT5G38700.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures;
EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten
leaves visible, petal differentiation and expansion stage,
LP.08 eight leaves visible, LP.12 twelve leaves visible; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02170.1);
Has 64 Blast hits to 64 proteins in 13 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr5:15489594-15490399 FORWARD LENGTH=806
Length=806
Score = 159 bits (86), Expect = 2e-38
Identities = 109/120 (91%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 409 GGAAGAAGAGAAAGGG-GTGGATGTGAGAGCTGAGGAGTTCATTGCTAAGTTCTATGAGC 467
|||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 525 GGAAGAAGAG-AAGGGTGTTGATGTGAGAGCAGAGGAGTTCATTGCTAAGTTCTATGAGC 583
Query 468 AGATCAAGTTGCAGAGACAAGTCTCTTATTTGGAATACAAACAACACAACGACGCCGTAT 527
|||| ||||| ||||| ||| ||||||||||| |||||||| |||||||||||| |||||
Sbjct 584 AGATGAAGTTACAGAGGCAAATCTCTTATTTGCAATACAAAGAACACAACGACGTCGTAT 643
Score = 152 bits (82), Expect = 3e-36
Identities = 110/123 (89%), Gaps = 4/123 (3%)
Strand=Plus/Plus
Query 61 AACACATAA-AGCTTGGAGTCTCGTGAGGATGGCTCTTCTATGGGGAAGAAAAGGTGGAG 119
|||||| || |||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 132 AACACA-AAGAGCTTGGAGTCTTGTGAGAATGGCTCTTCTATGGGGAAGAAAAGGTGGAA 190
Query 120 TTTTCAAAAGATGGC-CATTGTTCGAACTACGTAGCTTGTTCTCCAAGCATCTCAAAGCC 178
| ||||| ||||||| ||| ||| || || |||| |||||||||||||||||||||||||
Sbjct 191 TCTTCAAGAGATGGCACAT-GTTTGAGCTCCGTAACTTGTTCTCCAAGCATCTCAAAGCC 249
Query 179 CTA 181
|||
Sbjct 250 CTA 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25619414970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5