BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490356

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02160.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   750    0.0  


> AT4G02160.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G61710.1); 
Has 35 Blast hits to 35 proteins in 9 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:955101-955652 
REVERSE LENGTH=552
Length=552

 Score =  750 bits (406),  Expect = 0.0
 Identities = 503/547 (92%), Gaps = 17/547 (3%)
 Strand=Plus/Plus

Query  1    ATGGACATTCAAAATCAGTTTAATGGTGGCCAAGAAGAGATCAAGAATAAGATGAAGAAG  60
            ||||| |||||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct  1    ATGGAAATTCAAAATCAGATTAATGGTGGCCAAGAAGAGATCAAGAATATGAAGAAGAAG  60

Query  61   AAACGATCACGTGGTTTTCACGTCATTGGTGTCGTTTTATACATGCTTC-GCAGTCAGAG  119
            ||||||||||||||||||||||| || |||||||||||||||||||||| || ||| |||
Sbjct  61   AAACGATCACGTGGTTTTCACGTGATCGGTGTCGTTTTATACATGCTTCGGC-GTCGGAG  119

Query  120  GAGAAGCAAGCCGCTTAATAACGGGTTTTGGCGGCGAGTTGTTGAGTCCATTAGGCAGTT  179
            ||| |||||||||||||||||||||||||||||||||||||| |||||| || |||||||
Sbjct  120  GAGGAGCAAGCCGCTTAATAACGGGTTTTGGCGGCGAGTTGTCGAGTCCTTTGGGCAGTT  179

Query  180  GAAAAACGAAAATGTTACGGTACTTCCA---TCGTCTAATATAACGATACTGCCACCATC  236
            ||||||||| ||||||||||||||||||   ||||||||||| |||||||| ||||||||
Sbjct  180  GAAAAACGACAATGTTACGGTACTTCCATCGTCGTCTAATATTACGATACTACCACCATC  239

Query  237  GTCTGCTCCGGTTACAGAGGAAGTTTTAGCGAGTAGTGACGATCAGGTATCGGAGATGGT  296
             ||| ||||||| || || ||||||   ||||||||||||||||||||||||||||||||
Sbjct  240  ATCTTCTCCGGTGACGGATGAAGTTCCGGCGAGTAGTGACGATCAGGTATCGGAGATGGT  299

Query  297  TGAGGTTTTCACGGCGACGTCTAGTTCTTGCTCTTCGGGAATCTCGGGATATGGATCAGC  356
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  TGAGGTTCTCACGGCGACGTCTAGTTCTTGCTCTTCGGGAATCTCGGGATATGGATCAGC  359

Query  357  AAAGTCGTTGCGCGATATGGATTGTCTtgatgaagatgatgatgattatgatgatgatga  416
            |||||||||||| |||||||||||||||||||||||||||||||||   |||||  |  |
Sbjct  360  AAAGTCGTTGCGAGATATGGATTGTCTTGATGAAGATGATGATGAT---GATGA--A--A  412

Query  417  tgaatattatggtaatgatgatggaggtgatgagatgattgatgCGAAAGCTGAGGAGTT  476
              | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  413  --A-T-T-ATGGTAATGATGATGGAGGTGATGAGATGATTGATGCGAAAGCTGAGGAGTT  467

Query  477  TATTGTGAGATTTTATGAACAAATGAGGATGCAAAATCAGGCTTATACAGAACGTAACAA  536
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct  468  TATTGTGAGATTTTATGAACAGATGAGGATGCAAAATCAGGCTTATACAGAACGTTACAA  527

Query  537  AGCCAAA  543
            ||| |||
Sbjct  528  AGCTAAA  534



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26171990587


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5