BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490360
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02130.1 | Symbols: GATL6, LGT10 | galacturonosyltransferase... 2309 0.0
AT1G02720.1 | Symbols: GATL5 | galacturonosyltransferase 5 | ch... 732 0.0
> AT4G02130.1 | Symbols: GATL6, LGT10 | galacturonosyltransferase
6 | chr4:944367-947085 REVERSE LENGTH=1693
Length=1693
Score = 2309 bits (1250), Expect = 0.0
Identities = 1411/1488 (95%), Gaps = 14/1488 (1%)
Strand=Plus/Plus
Query 1 TCTGCTTCTTCTTCTCCGAG---C-TCCGAGCAGAGAAGAAGAG-AAGGTAAGTATTAGA 55
||| |||||||||||||||| | ||||||||||||||||||| ||||||||| |||||
Sbjct 53 TCTTCTTCTTCTTCTCCGAGCTCCGTCCGAGCAGAGAAGAAGAGTAAGGTAAGTTTTAGA 112
Query 56 GTGCACTTGTGTGGCACTCTGATTTCTTATCCTGCGCCAC-TCCGGTTTCTTATCGTGCG 114
|||||||||||||||||||| ||||||||||||||||| | | || |||||||| |||||
Sbjct 113 GTGCACTTGTGTGGCACTCTCATTTCTTATCCTGCGCCTCTTACGATTTCTTATGGTGCG 172
Query 115 CTTCTCCGACTAGTTTCGGTGTCTAATGGACTCTTCTTCTTCTTCTCCATCTCTCCAAGA 174
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 173 CTTCTCCGACTAGTTTCGGTGTCTAATGGACTCTTCCTCTTCTTCTCTATCTCTCCAAGA 232
Query 175 AAAAATCTCTTCGGGTTATTTCTAGGGTTTCGTTGATTTCGTTTTTCGAAATGCTTTGGA 234
|||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 233 AAAAATCTCTTCTGGTTATTTCTAGGGTTTCGTTG-GTTCTTTTTTCGAAATGCTTTGGA 291
Query 235 TAACGAGATTTTCTGGATTTTTCTCCGCCGCGATGGCAGTGATCGTGTTATCTCCGTCGC 294
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TAACGAGATTTGCTGGATTATTCTCCGCCGCGATGGCAGTGATCGTGTTATCTCCGTCGC 351
Query 295 TTCAGTCATTTCCTCCGGCGGCGGCAATCCGTTCGTCTCCATCACCGATCTTCAGAAAAG 354
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 352 TTCAGTCATTTCCTCCGGCGGCGGCAATCCGTTCTTCTCCATCACCGATCTTCAGAAAAG 411
Query 355 CTCCAGTGGTGTTCAACAACGGCGACGAATGTCTCTCCTCCGGCGGCGTTTGCAATCCGT 414
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 412 CTCCAGCGGTGTTCAACAACGGCGACGAATGTCTCTCCTCCGGCGGCGTCTGCAATCCGT 471
Query 415 CGTTGGTCCACGTGGCGATCACGTTAGACGTAGAGTACCTGCGTGGCTCAATCGCAGCCG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CGTTGGTCCACGTGGCGATCACGTTAGACGTAGAGTACCTGCGTGGCTCAATCGCAGCCG 531
Query 475 TGAATTCAATCCTTCAGCACTCGATTTGTCCAGAGAGCGTCTTCTTCCACTTCATCGTCG 534
| || || ||||||||||||||| | ||||||||||||||||||||||||||||||| ||
Sbjct 532 TTAACTCGATCCTTCAGCACTCGGTGTGTCCAGAGAGCGTCTTCTTCCACTTCATCGCCG 591
Query 535 TCTCCGAGGAAACAAACCTGTTGGAGTCGCTGGTGAGATCGATTTTCCCGGGATTGAAAT 594
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 592 TCTCCGAGGAAACAAACCTGTTGGAGTCGCTGGTGAGATCGGTTTTCCCGAGACTGAAAT 651
Query 595 TCAATATTTACGATTTTGCCCCTGAGACTGTTCGTGGTTTGATTTCTTCTTCCGTGAGAC 654
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 652 TCAATATTTACGATTTTGCCCCTGAGACAGTTCGTGGTTTGATTTCTTCTTCCGTGAGAC 711
Query 655 AAGCTCTTGAGCAACCTTTGAATTACGCTAGAAATTACTTAGCGGATCTGCTCGAGCCTT 714
||||||| ||||| ||| |||| |||||||||| ||||||||||||||||| |||||||
Sbjct 712 AAGCTCTCGAGCAGCCTCTGAACTACGCTAGAAGCTACTTAGCGGATCTGCTGGAGCCTT 771
Query 715 GTGTTAACCGTGTCATATACTTGGATTCGGATCTTGTCGTCGTCGATGACATCGCTAAGC 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GTGTTAACCGTGTCATATACTTGGATTCGGATCTTGTCGTCGTCGATGACATCGCTAAGC 831
Query 775 TTTGGAAAACTAGTCTAGGCTCGAGGATCATCGGAGCTCCCGAGTATTGTCACGCGAATT 834
||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 832 TTTGGAAAACTAGCCTAGGCTCGAGGATAATCGGAGCTCCGGAGTATTGTCACGCGAATT 891
Query 835 TCACGAAATACTTCACCGGAGGATTCTGGTCGGAGGAGAGATTCTCCGGGACGTTTAGAG 894
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 892 TCACGAAATACTTCACCGGAGGATTCTGGTCGGAGGAGAGATTCTCCGGTACCTTTAGAG 951
Query 895 GGAGGAAGCCTTGTTACTTCAACACAGGTGTGATGGTGATAGATCTTAAGAAATGGAGAA 954
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GGAGGAAGCCATGTTACTTCAACACAGGTGTGATGGTGATAGATCTTAAGAAATGGAGAA 1011
Query 955 GAGGTGGTTACACGAAACGTATCGAGAAATGGATGGAGATTCAGAGAACAGAGAGGATTT 1014
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1012 GAGGTGGTTACACGAAACGTATCGAGAAATGGATGGAGATTCAGAGAAGAGAGAGGATTT 1071
Query 1015 ACGACCTCGGCTCGCTTCCACCGTTTCTTCTTGTTTTCGCCGGTCACGTGGCTCCCATCT 1074
|||| || ||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1072 ACGAACTAGGCTCGCTTCCACCGTTTCTTCTAGTTTTCTCCGGTCACGTGGCTCCCATCT 1131
Query 1075 CTCACCGTTGGAACCAGCATGGACTTGGTGGTGACAATGTTAGAGGTAGCTGTCGTGATT 1134
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 CTCACCGGTGGAACCAGCATGGACTTGGTGGTGACAATGTTAGAGGTAGCTGTCGTGATT 1191
Query 1135 TGCATCCTGGTCCAGTGAGTTTGCTGCATTGGTCTGGTAGTGGCAAGCCATGGATAAGAC 1194
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1192 TGCATCCTGGTCCTGTGAGTTTGCTGCATTGGTCTGGTAGTGGCAAGCCCTGGATAAGAC 1251
Query 1195 TCGATTCGAAACGGCCTTGTCCGTTAGACGCATTATGGACGCCTTACGACTTGTATCGAC 1254
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1252 TCGATTCCAAACGGCCTTGTCCCTTAGACGCATTATGGACGCCTTACGACTTGTATCGAC 1311
Query 1255 ATTCGCATTGACGTTGCCG-GTA-GATGGTGCGTTATATGAGGAGAGAGTAGAGGAAGGG 1312
||||||||||||||| | | | | | |||||| | ||||||||||||||||||||||||
Sbjct 1312 ATTCGCATTGACGTTTCAGCGAATGGTGGTGC-T-ATATGAGGAGAGAGTAGAGGAAGGT 1369
Query 1313 TGCACTGGTCTTGGCCGGCC-AGGTCTGGAAGAAAATCAAAGGTAGCTTTTGTTGTAGAA 1371
| || |||||||| |||||| || |||| |||||||||||||||||||||||| ||||||
Sbjct 1370 TTCATTGGTCTTGACCGGCCCAG-TCTGAAAGAAAATCAAAGGTAGCTTTTGTAGTAGAA 1428
Query 1372 AATGAAAACCCTTTGCTGATAAAATGGGTTTGCTTTAGCCAAACCGGAGACACAACTGAG 1431
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1429 GATGAAAACCCTTTGCCGATAAAATGGGTTTGGTTTAGCCAAACCGGAGACACAACTGAG 1488
Query 1432 ATGTGGGAATTTTATTTTCAAACCGGCGGGTTGGATCAt-tttttttt 1478
||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1489 ATGTGGGAATTTTATTTTCAAACCGGCGGGTTGGATCATATTTTTTTT 1536
> AT1G02720.1 | Symbols: GATL5 | galacturonosyltransferase 5 |
chr1:591826-594236 FORWARD LENGTH=1775
Length=1775
Score = 732 bits (396), Expect = 0.0
Identities = 712/862 (83%), Gaps = 32/862 (4%)
Strand=Plus/Plus
Query 420 GTCCACGTGGCGATCACGT-TAGACGTAGAGTACCTGCGTGGCTCAATCGCAGCCGTGAA 478
|||||||| || ||||| | | ||| | || ||||| |||||||||||||||||||| ||
Sbjct 530 GTCCACGTAGCCATCAC-TCTCGACATCGATTACCTCCGTGGCTCAATCGCAGCCGTCAA 588
Query 479 TTCAATCCTTCAGCACTCGATTTGTCCAGAGAGCGTCTTCTTCCACTTCATCGTCGT-CT 537
||| ||||| |||||||| || || || | |||||||||||||||||| ||||| | ||
Sbjct 589 TTCGATCCTCCAGCACTCAATGTGCCCTCAAAGCGTCTTCTTCCACTTCCTCGTC-TCCT 647
Query 538 CCGAGGAAAC-AAACCTGTTGGAGTCGCTGGTGAGATCGATTTTCCCGGGATTGA--AAT 594
|||| | | ||||| | || || ||| | | || | |||||| ||||| |||
Sbjct 648 CCGA-GTCTCAAAACC---TAGAATCTCTGATTCGTTCTACTTTCCCCAAATTGACGAAT 703
Query 595 -TCAATATTTACGATTTTGCCCCTGAGACTGTTC-GTGGTTTGATTTCTTCTTCCGTGAG 652
|||| |||||| |||||||||||||||| || | || ||||||||| |||||||||||
Sbjct 704 CTCAAAATTTACTATTTTGCCCCTGAGACCGTACAGT-CTTTGATTTCATCTTCCGTGAG 762
Query 653 ACAAGCTCTTGAGCAACCTTTGAATTACGCTAGAAATTACTTAGCGGATCTGCTCGAGCC 712
|||||| || |||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 763 ACAAGCCCTAGAGCAACCGTTGAATTACGCCAGAAATTACTTGGCGGATCTGCTCGAGCC 822
Query 713 TTGTGTTAACCGTGTCATATACTTGGATTCGGATCTTGTCGTCGTCGATGACATCGCT-A 771
||| ||||| || ||||| ||||||||||||||||| |||||||||||||| |||| | |
Sbjct 823 TTGCGTTAAGCGAGTCATCTACTTGGATTCGGATCTCGTCGTCGTCGATGATATCG-TCA 881
Query 772 AGCTTTGGAAAACTAGTCTAGGCTCGAG-GATC-ATCGGAGCTCCCGAGTATTGTCACGC 829
||||||||||||| || ||||| | || || | ||||||||||| ||||||||||||||
Sbjct 882 AGCTTTGGAAAACGGGTTTAGGC-C-AGAGAACAATCGGAGCTCCGGAGTATTGTCACGC 939
Query 830 GAATTTCACGAAATACTTCACCGGAGGATTCTGGTCGGAGGAGAGATTCTC-CGGGACGT 888
||||||||||||||||||||||||||| || ||||| || |||| || | ||||||||
Sbjct 940 GAATTTCACGAAATACTTCACCGGAGGTTTTTGGTCAGATAAGAGGTT-TAACGGGACGT 998
Query 889 TTAGAGGGAGGAAGCCTTGTTACTTCAACACAGGTGTGATGGTGATAGATCTT-AAGAAA 947
| | ||||||||| |||||||||||||| || ||||| |||||||| ||| || |||||
Sbjct 999 TCAAAGGGAGGAACCCTTGTTACTTCAATACTGGTGTAATGGTGATTGAT-TTGAAGAAG 1057
Query 948 TGGAGA-AGAGGT-GGTTACACGAAACGTATCGAGAAATGGATGGAGATTCAGA-GAACA 1004
|||||| | | | |||| ||||||||| || |||||||||||||||||||||| || |
Sbjct 1058 TGGAGACA-ATTTAGGTT-CACGAAACGAATTGAGAAATGGATGGAGATTCAGAAGAT-A 1114
Query 1005 GAGAGGATTTACGACCTCGGCTCGCTTCCACCGTTTCTTCTTGT-TTTCGCCGGTCACGT 1063
||||||||||| || || || || ||||| ||||||||||| || ||| || ||||| ||
Sbjct 1115 GAGAGGATTTATGAGCTTGGTTCTCTTCCTCCGTTTCTTCTGGTATTT-GCTGGTCATGT 1173
Query 1064 GGCTCCCATCTCTCACCGTTGGAACCAGCATGGACTTGGTGGTGACAATGTTAGAGGTAG 1123
||||| || || || || ||||| || ||||| ||||||||||| ||||||||||||||
Sbjct 1174 AGCTCCGATTTCACATCGGTGGAATCAACATGGGCTTGGTGGTGATAATGTTAGAGGTAG 1233
Query 1124 CTGTCGTGATTTGCATCCTGGTCCAGTGAGTTTGCTGCATTGGTCTGGTAGTGGCAAGCC 1183
|| |||||||||||| ||||||| ||||||||||| || ||||| |||||||| |||||
Sbjct 1234 TTGCCGTGATTTGCATTCTGGTCCTGTGAGTTTGCTTCACTGGTCAGGTAGTGGTAAGCC 1293
Query 1184 ATGGATAAGACTCGATTCGAAACGGCCTTGTCCGTTAGACGCATTATGGACGCCTTACGA 1243
|||| ||||||||||||| || | || ||||| |||||| |||| ||| | ||||| ||
Sbjct 1294 ATGGTTAAGACTCGATTCCAAGCTTCCATGTCCTTTAGACACATTGTGGGCACCTTATGA 1353
Query 1244 CTTGTATCGACATTCGCATTGA 1265
|||||| ||| || ||||||
Sbjct 1354 TTTGTATAAACACTCCCATTGA 1375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74849012595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5