BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490363
Length=1319
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16560.1 | Symbols: | Per1-like family protein | chr1:56684... 1125 0.0
AT1G16570.2 | Symbols: | UDP-Glycosyltransferase superfamily p... 154 2e-36
> AT1G16560.1 | Symbols: | Per1-like family protein | chr1:5668413-5670708
FORWARD LENGTH=1446
Length=1446
Score = 1125 bits (609), Expect = 0.0
Identities = 779/857 (91%), Gaps = 27/857 (3%)
Strand=Plus/Plus
Query 485 GGATGTTGACCTCACAGAGAGGTTGGACTACTCATCTGCAGTAGCCG-TTCTCGGATTCT 543
|||||||||||| ||||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct 595 GGATGTTGACCTTACAGAGAGGTTGGACTACTCATCCGCAGTAG-CGATTCTCGGATTCT 653
Query 544 CACTCATCTTAGCCATTTTACGAACCTTTGATATTCGGGTCGAGGCTACAAGGGTTATGG 603
||||||||||||||||||||||||| |||||||||||||| |||||| ||||||| ||||
Sbjct 654 CACTCATCTTAGCCATTTTACGAACATTTGATATTCGGGTTGAGGCTGCAAGGGTCATGG 713
Query 604 TATCGGCTCCAATACTAGCTTTTGTAACCACCCACATACTCTACATAAACTTCTACAAAC 663
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TATCCGCTCCAATACTAGCTTTTGTAACCACCCACATACTCTACATAAACTTCTACAAAC 773
Query 664 TCGACTATGGTTGGAACATGATTGTGTGTATGGCAATGGGAGTCACTCAGCTTTTTCTAT 723
|||||||||| |||||||||||||||||| |||||||||||||| | |||||||| ||||
Sbjct 774 TCGACTATGGCTGGAACATGATTGTGTGTGTGGCAATGGGAGTCTCACAGCTTTTCCTAT 833
Query 724 GGGCAAGATGGGCTGCTGTCTCGAGCCATCCTTCTAACTGGAAACTTTGGGTGGTTGTGA 783
||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 834 GGGCAAGATGGGCCGCTGTCTCAAGCCACCCTTCTAATTGGAAACTTTGGGTGGTTGTGA 893
Query 784 TAGCTGGAGGATTAGCCATGCTTCTAGAGATATATGATTTTCCTCCATATGAAGGATACT 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 894 TAGCTGGAGGATTAGCCATGCTTCTAGAGATATATGATTTTCCTCCATATGAAGGCTACT 953
Query 844 TCGATGCTCACTCGATCTGGCACGCTGCCACAATTCCCTTAACCATTCTCTGGTGGAGCT 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TCGATGCTCACTCGATCTGGCACGCTGCCACAATTCCCTTAACCATTCTCTGGTGGAGCT 1013
Query 904 TCATTAGAGACGATGCTGAGTTCAGAACTTCCAGCCTCCTCAAGAAAACTAAGACGAAGG 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TCATTAGAGACGATGCTGAGTTCAGAACTTCCAGCCTCCTCAAGAAAACTAAGACGAAGG 1073
Query 964 CAAAGTGAGT-TCTTCGCTAAATTTCAGAAGGATTTATATTCGACCGTACAAATTTGCA- 1021
|||||||||| |||| ||||| ||| | |||||||| ||| ||||| ||| | | ||||
Sbjct 1074 CAAAGTGAGTCTCTTTGCTAAGTTTTACAAGGATTTTTATCCGACCATACGAGTATGCAG 1133
Query 1022 AGCACG-GGAGAAAAACACAAGGTGGAAATGGATTCAAGCATCACGAAGAAGGAAGAGAC 1080
| |||| || |||||||| ||| |||||||||||| || |||||||||||||| |||| |
Sbjct 1134 A-CACGAGG-GAAAAACAAAAGATGGAAATGGATTTAAACATCACGAAGAAGGCAGAGTC 1191
Query 1081 TTTTGTTTAAAGCTAGCTGGTTT--GGATTCACAGGTTTCTTCAGtttttgtt-tttt-t 1136
||||||||||||||||||||||| ||||||||||||||||||||||||| || |||| |
Sbjct 1192 TTTTGTTTAAAGCTAGCTGGTTTATGGATTCACAGGTTTCTTCAGTTTTTTTTATTTTAT 1251
Query 1137 A-----AC-TG---TG--GAATTTGCTTTGAGCCTTTCAGAAAATTTTCTT-GGCCTTAC 1184
| || | || |||||||||||||||||||||| ||||||| ||||||||
Sbjct 1252 ATTGTTACATTAACTGTTGAATTTGCTTTGAGCCTTTCAGTGT-TTTTCTTTGGCCTTAC 1310
Query 1185 TTTTGGTTAATTGAGATTTTGATATCATTTACTCATTCATACAAAGACTCCTGCCAAATC 1244
|||||||||| |||||||||||||||||||||||||||||| |||||| ||| ||| |
Sbjct 1311 TTTTGGTTAAGAAAGATTTTGATATCATTTACTCATTCATACACAGACTCATGCGAAACC 1370
Query 1245 ATTTCGGAAT-CAGATTATGACAATATTT-CGAGACAATCTTGTAATCTATATGATTGTG 1302
|||| | ||| |||||| || |||||||| |||||||||||||||||||||| |||| ||
Sbjct 1371 ATTTTG-AATTCAGATTCTGTCAATATTTTCGAGACAATCTTGTAATCTATAGGATTTTG 1429
Query 1303 TACAAAAATTTGGATCT 1319
|| ||||||||||||||
Sbjct 1430 TATAAAAATTTGGATCT 1446
Score = 747 bits (404), Expect = 0.0
Identities = 442/461 (96%), Gaps = 0/461 (0%)
Strand=Plus/Plus
Query 25 AGATGGCAGTCCACTACTGGACATCCCTGTTTCTATTGTTGTCATGCCTTTTCAGTATTT 84
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 51 AGATGGCAGTCCACTACTGGACAGCCCTGTTTCTATTGTTGCCATGCCTTTTCTGTATTT 110
Query 85 CAAATGCTAGTGCTGGCGATGCCGATCCAGATTACAGGACATGCATTTCAGAATGTGAGA 144
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 111 CAAATGCTAGTGCTGGCGATGCTGATCCAGATTACAGGACATGTGTTTCAGAATGTGAGA 170
Query 145 TAAGCGGTTGTGTTGGACAACTTTGCTTTCCTCAGTGCAATTCTTCATCCGATGGTGGTC 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TAAGCGGTTGTGTTGGACAACTTTGCTTTCCTCAGTGCAATTCTTCATCCGATGGTGGTC 230
Query 205 CATGGTACATACAAGAACCTCTGTATTTACAATGGAAAAAATGGGGTTGTCAAGGTGATT 264
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 231 CATGGTACATCCAAGAACCTTTGTATTTACAATGGAAAAAATGGGGTTGTCAAGGTGATT 290
Query 265 GCCGTTATCAATGTATGGTTAATAGAGAGAGAGAACGGGAAACTCTTGGTCAAGCCCCGG 324
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 291 GCCGTTATCAATGTATGGTTAATAGAGAGACTGAACGGGAAACTCTCGGTCAAGCCCCAG 350
Query 325 TCAAGTACCATGGTAAATGGCCCTTCAAGCGTGTACTTGGGATTCAGGAGCCTGCTTCTG 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TCAAGTACCATGGTAAATGGCCCTTCAAGCGTGTACTTGGGATTCAGGAGCCTGCTTCTG 410
Query 385 TTGCGTTCTCTGTGCTCAACCTAGCAATGCATTTCCATGGTTGGCTTTCCTTTTTCATCA 444
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TTGCTTTCTCTGTACTCAACCTAGCAATGCATTTCCATGGTTGGCTTTCCTTTTTCATCA 470
Query 445 CGCTCTACTATAAATTGCCTCTGAAACAAGATAAGTCAGCG 485
| |||||||||| ||||||||||||||||||| | |||||
Sbjct 471 TGATCTACTATAAGTTGCCTCTGAAACAAGATAGGACAGCG 511
> AT1G16570.2 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr1:5670577-5673600 REVERSE LENGTH=1729
Length=1729
Score = 154 bits (83), Expect = 2e-36
Identities = 111/124 (90%), Gaps = 3/124 (2%)
Strand=Plus/Minus
Query 1198 AGATTTTGATATCATTTACTCATTCATACAAAGACTCCTGCCAAATCATTTCGGAAT-CA 1256
|||||||||||||||||||||||||||||| |||||| ||| ||| ||||| | ||| ||
Sbjct 1720 AGATTTTGATATCATTTACTCATTCATACACAGACTCATGCGAAACCATTTTG-AATTCA 1662
Query 1257 GATTATGACAATATTT-CGAGACAATCTTGTAATCTATATGATTGTGTACAAAAATTTGG 1315
|||| || |||||||| |||||||||||||||||||||| |||| |||| ||||||||||
Sbjct 1661 GATTCTGTCAATATTTTCGAGACAATCTTGTAATCTATAGGATTTTGTATAAAAATTTGG 1602
Query 1316 ATCT 1319
||||
Sbjct 1601 ATCT 1598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64909304685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5